View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18838_high_2 (Length: 430)
Name: NF18838_high_2
Description: NF18838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18838_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 36083839 - 36083428
Alignment:
| Q |
1 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083839 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
36083740 |
T |
|
| Q |
101 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36083739 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagttgaagt |
36083640 |
T |
|
| Q |
201 |
tcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083639 |
tcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctc |
36083540 |
T |
|
| Q |
301 |
ctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggtaagtgattctctgcctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
36083539 |
ctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggaaagtgattctctacctc |
36083440 |
T |
|
| Q |
401 |
ctcctccaccac |
412 |
Q |
| |
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|||||||||||| |
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| T |
36083439 |
ctcctccaccac |
36083428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 36149987 - 36149803
Alignment:
| Q |
47 |
tggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaaga |
146 |
Q |
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||||| |||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||| |
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| T |
36149987 |
tggaaattcaagcccacaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaaga |
36149888 |
T |
|
| Q |
147 |
agaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctc |
234 |
Q |
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| T |
36149887 |
aaaagcacctctacttttaactataccacatccgcacaccattgaagttcaag--cac-gcaaagacgaagaagaagcacttctcctc |
36149803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 134 - 412
Target Start/End: Complemental strand, 36149972 - 36149700
Alignment:
| Q |
134 |
acaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcct |
233 |
Q |
| |
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||||||| |||||||||| || ||| | ||||| | ||||||| || ||| |||||| |||||||||||||||||| |||||| ||| || ||| || |
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| T |
36149972 |
acaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaagaaaaagcacctctact |
36149873 |
T |
|
| Q |
234 |
cttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaa |
333 |
Q |
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|||| | |||||| ||| ||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
36149872 |
tttaactataccacatccgcacaccattgaagttcaagcacgcaaagacgaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagaaa |
36149773 |
T |
|
| Q |
334 |
gaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggtaagtgattctctgcctcctcctccaccac |
412 |
Q |
| |
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||||||| ||||||| || | || || ||||||| || ||||||| ||||||||||| ||||||| | ||||||| |
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| T |
36149772 |
gaagaag---actctcccaagctag---aaaaagaagtgcaaatgaaggaaagtgattctccgcctccttcaccaccac |
36149700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 36083921 - 36083840
Alignment:
| Q |
1 |
tgtttgagaagccatgcaccctata-gtt-ttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaaga |
80 |
Q |
| |
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||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083921 |
tgtttgagaagccatgcgccctataagttcttttattactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
36083840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 402
Target Start/End: Complemental strand, 36149610 - 36149518
Alignment:
| Q |
307 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggtaagtgattctctgcctcct |
402 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | ||||| || || |||||||| ||||||| |
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| T |
36149610 |
acatgtgcactcaaaatagatgacaaagaagaagaacactctcctaaaca---acaagaagaagttcccatgatggaaaatgattctccgcctcct |
36149518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 36160672 - 36160590
Alignment:
| Q |
257 |
ccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaa |
339 |
Q |
| |
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||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||| |||||| ||||| | ||||||||||| |
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| T |
36160672 |
ccatggaagctcaagcatacaaagagcaagaagaagcacttctcatccaaacacttgcacttcaaatagacaacaaagaagaa |
36160590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 36149453 - 36149358
Alignment:
| Q |
284 |
aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaagg |
382 |
Q |
| |
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||||| ||||||| || |||||||||| ||||| |||||| | |||||||||||| |||||||| || ||||||||||||| || |||| |||||| |
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| T |
36149453 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaa---cactctcctaatcaaggacaagaagtagcacacgtgaagg |
36149358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 26527329 - 26527413
Alignment:
| Q |
261 |
ggaagttcaagcacacaaagagg------aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaa |
339 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
26527329 |
ggaagttcaagcacacaaagaggtagaagaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgagatagaagaa |
26527413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 26527541 - 26527624
Alignment:
| Q |
284 |
aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaag |
370 |
Q |
| |
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||||| ||||||| || |||||||||| ||||| |||||| | |||| |||||||||| ||||| || |||||||||||||||| |
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| T |
26527541 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgaca---aagaagaacagtctcctaagcaaggacaagaagaag |
26527624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 17454218 - 17454150
Alignment:
| Q |
270 |
agcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaaga |
338 |
Q |
| |
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|||| |||||||| ||||| || |||||||| |||||||| ||||||||||||| | |||||||||| |
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|
| T |
17454218 |
agcatacaaagagcaagaataaacacttctcatccaaacacatgcactcaaaatagacaacaaagaaga |
17454150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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