View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18838_high_5 (Length: 291)
Name: NF18838_high_5
Description: NF18838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18838_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 8998693 - 8998415
Alignment:
| Q |
1 |
tgctgcatacgcgaggctgtatttaaacctagaatcttgattaaactaagaaaaatctatgatttctcatctaagcgttatagggcgaagaaaaaggatt |
100 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
8998693 |
tgctgcatatccgagactgtatttaaacctagaatcttgattaaactaaaagaaatctatgatttctcatctgagcgttatagggcgaagaaagaggatt |
8998594 |
T |
|
| Q |
101 |
tagtaaggagggaaaaccttnnnnnnnntaaaa----tgttagtgtggggtccatgtgtatgcaggtattagttaagggacccacaaagggtggacgttg |
196 |
Q |
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||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8998593 |
tagtaaggagggaaaacataaaaaaaaataaaaaaaatgttagtgtggggtccatgtgtatgcaggtattagttaagggacccacaaagggtggacgttg |
8998494 |
T |
|
| Q |
197 |
tagggattttttagaagagtaagggcgcacgcccacatccataactacgacctctgaccttaaaatctccatggaaaag |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8998493 |
tagggattttttagaagagtaagggcgcacgcccacatccataactacgacctctgaccttaaaatctccatggaaaag |
8998415 |
T |
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