View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18838_low_1 (Length: 491)
Name: NF18838_low_1
Description: NF18838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18838_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Complemental strand, 38261227 - 38260748
Alignment:
| Q |
10 |
catcatcattgattgaagcatgtttcttatcagcacaagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtct |
109 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |
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|
| T |
38261227 |
catcatcattgacataagcatgtgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcct |
38261128 |
T |
|
| Q |
110 |
ctttcgaatcctagaattgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttca |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38261127 |
ctttcgaatcctagaaatgtatctcttttttctgtcttcttcactttcgaacttgcagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
38261028 |
T |
|
| Q |
210 |
aatattttgttgcattgggaacatgggtatggtccatgtttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttct |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38261027 |
aatattttgttgcattttgaacatgggtatggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttct |
38260928 |
T |
|
| Q |
310 |
ttctcatatcgttcttgttaacatccccaacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggag |
409 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38260927 |
ttctcatatcgttcttgttaacat-cccaacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggag |
38260829 |
T |
|
| Q |
410 |
atcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgttgttcttgttgttattgatgatgatgtc |
490 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38260828 |
atcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgttattcttgttgttattgatgatgatgtc |
38260748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 473
Target Start/End: Complemental strand, 38244927 - 38244467
Alignment:
| Q |
10 |
catcatcattgattgaagcatgtttcttatcagcacaagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtct |
109 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
38244927 |
catcattattgattgaagcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtct |
38244828 |
T |
|
| Q |
110 |
ctttcgaatcctagaattgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
38244827 |
ctttcgaatcctagaattgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
38244728 |
T |
|
| Q |
210 |
aatattttgttgcattgggaacatgggtatggtccatgtttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||| ||||||||||| ||||||||||||| |
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|
| T |
38244727 |
aatattttgttgcattgggaacatgggtatggtccatgtttctcgtgtggtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttct |
38244628 |
T |
|
| Q |
310 |
ttctcatatcgttcttgttaacatccccaacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggag |
409 |
Q |
| |
|
| || |||| |||||||||| ||||| |||||||| ||| | | ||| || ||||||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
38244627 |
tccttttatcattcttgttaatatccctaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaag |
38244528 |
T |
|
| Q |
410 |
atcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgttgttcttgttg |
473 |
Q |
| |
|
||||||||||||||||| || | ||||||||||| |||||||| |||||||||| |||||| |
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|
| T |
38244527 |
atcaagatgagaagaagtag---tagaagtattcattttcatcatcttgttgttgttgttgttg |
38244467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 54 - 287
Target Start/End: Original strand, 47285507 - 47285737
Alignment:
| Q |
54 |
acaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttcac |
153 |
Q |
| |
|
|||| ||||| ||||||| |||| |||| ||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
47285507 |
acagaaacaagagtagttgttccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctcttcttcac |
47285606 |
T |
|
| Q |
154 |
tttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgggaacatgggtatggtccatgtttctt |
253 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||| ||||| ||||| ||| | | || ||||||||| | ||||| | ||| ||||||||||| || |
|
|
| T |
47285607 |
tttcagtcttgtagtgacttgat---acatgagcagcgaatttctgtgatgttgctattactttgttgcactctgaacacgtgtacggtccatgtttatt |
47285703 |
T |
|
| Q |
254 |
gtgtggtaggctgtggattcttccatcattaata |
287 |
Q |
| |
|
||| ||||| ||||||||||| ||||||| |||| |
|
|
| T |
47285704 |
gtgaggtagactgtggattctaccatcatcaata |
47285737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 282
Target Start/End: Original strand, 47307067 - 47307289
Alignment:
| Q |
57 |
ggaacaaaagtagttattccgtcattgagcttttg-aatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttcactt |
155 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| |||| || || ||||||||||| |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
47307067 |
ggaacaaaagtagttgttccatcattgagcttttggaatcgga-gatctggtctctttcggatcctagacatgtatctcttttttttctcttcttcactt |
47307165 |
T |
|
| Q |
156 |
tcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgggaacatgggtatggtccatgtttcttgt |
255 |
Q |
| |
|
|| |||||||||| |||||| ||||| |||||||||||||||| ||| | | || |||||| || | | ||| | |||||||||| ||| |||| |
|
|
| T |
47307166 |
tctgacttgtagtgtattgatg---catgactagcaaatttttgtgatgttgctagtactttgttacactttggacacgtatatggtccatttttattgt |
47307262 |
T |
|
| Q |
256 |
gtggtaggctgtggattcttccatcat |
282 |
Q |
| |
|
||| ||| |||||| |||| ||||||| |
|
|
| T |
47307263 |
gtgatagactgtgggttctaccatcat |
47307289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 2589546 - 2589674
Alignment:
| Q |
46 |
aagcaacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtc |
145 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||||||| | ||| ||||||||||| ||| |||| |||||||||||||||| || |
|
|
| T |
2589546 |
aagcaacaactggaacaaaagtagttgttccatcattgagcttttgaatccggagatttggtctctttcggatcttagacatgtatctcttttttctctc |
2589645 |
T |
|
| Q |
146 |
ttcttcactttcgaacttgtagtgacttg |
174 |
Q |
| |
|
|||| | |||| ||||||||||||||| |
|
|
| T |
2589646 |
ttctagagtttcagacttgtagtgacttg |
2589674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 10299610 - 10299735
Alignment:
| Q |
50 |
aacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctc-ttttttctgtcttc |
148 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||| ||| |||| |||||||| |||||||| ||||| |
|
|
| T |
10299610 |
aacaaccggaacaaaagtagttgttctatcattgagcttttgaatctggagatttggtctcttttagatcatagacatgtatctctttttttctctcttc |
10299709 |
T |
|
| Q |
149 |
ttcactttcgaacttgtagtgacttg |
174 |
Q |
| |
|
| | |||| ||||||||||||||| |
|
|
| T |
10299710 |
tagagtttcagacttgtagtgacttg |
10299735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 2589923 - 2589833
Alignment:
| Q |
49 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttt |
139 |
Q |
| |
|
||||||| |||||||||| ||| |||| ||||||| |||||||| |||||| ||||||||| | |||||||| ||||||||||||| |
|
|
| T |
2589923 |
caacaactcgaacaaaagttgttgttccaacattgagtttttgaatatgaagatttggtctctttgggatcctagacatgtatctcttttt |
2589833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 22222657 - 22222532
Alignment:
| Q |
49 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttc |
148 |
Q |
| |
|
||||||| | |||||| || ||| |||| ||||||| ||||||||||| ||| | ||||||| | |||||||| |||||||||||||||| ||||| |
|
|
| T |
22222657 |
caacaactgaaacaaatgttgttgttccaacattgagtttttgaatctgcagatttgttctctttgggatcctagacatgtatctcttttttctttcttc |
22222558 |
T |
|
| Q |
149 |
ttcactttcgaacttgtagtgacttg |
174 |
Q |
| |
|
|| | |||| || ||||||||||||| |
|
|
| T |
22222557 |
ttgagtttcaaaattgtagtgacttg |
22222532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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