View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18838_low_2 (Length: 433)
Name: NF18838_low_2
Description: NF18838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18838_low_2 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 424
Target Start/End: Complemental strand, 246251 - 245843
Alignment:
| Q |
14 |
atcaatggtgtgtagaagatggaagaccgggaagatgcttgtaaggctattgctctcnnnnnnnacaataatgttattcgatttaatggtgcaagctctg |
113 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
246251 |
atcaatggtgtgtggaagaaggaagaccgggaagatgcttgttaggctattgctctccttttttacaataatgttattccatttaatggtgcaagctctg |
246152 |
T |
|
| Q |
114 |
atgagtattttaagatgtttaaatatgttgcaaagcatggtataatatttaagtcaccctcttatcacgagattagagttaaatatttggattatttcta |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
246151 |
atgagtattttaagatgtttgaatatgttgcaaagcatggtttaatatttaagccaccctcttatcatgagattagagttaaatatttggattatttcta |
246052 |
T |
|
| Q |
214 |
tggtgaaattagtaaggatttgactggacatagagttgtttgggagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaact |
313 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
246051 |
tggtgaaattagtaaggatttgacaggacatagagttgtttgggagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaact |
245952 |
T |
|
| Q |
314 |
atattgaattttttggtatatagtccaaagggaactttgnnnnnnnnaagtctattgatgcatctgacattaccaaaactgctgataaaatttttaagat |
413 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
245951 |
atattgaactttttggtacatagtccaaagggaacttt-tttttttaaagtctattga-gcatcttacattaccaaaactcctgataaaatttttaagat |
245854 |
T |
|
| Q |
414 |
gattgatgatg |
424 |
Q |
| |
|
||||||||||| |
|
|
| T |
245853 |
gattgatgatg |
245843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 424
Target Start/End: Original strand, 244240 - 244656
Alignment:
| Q |
14 |
atcaatggtgtgtagaagatggaagaccgggaagatgcttgtaaggctattgctctcnnnnnnnacaataatgttattcgatttaatggtgcaagctctg |
113 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||| |||| |
|
|
| T |
244240 |
atcaatggtgtgtggaagaaggaagaccgggaagatgcttgtaaggctattgctctctctttttacaataatgttattccatttgatgttgcaaggtctg |
244339 |
T |
|
| Q |
114 |
atgagtattttaagatgtttaaatatgttgcaaagcatggtataatatttaagtcac--cctcttatcacgagattagagttaaatatttggattatttc |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
244340 |
atgagtattttaagatgtttgaatatgttgcaaagcatggtataggatttaagccacaccctcttatcatgagattagagctaaatatttggattattta |
244439 |
T |
|
| Q |
212 |
tatggtgaaattagtaaggatttgactggacatagagttgtttgggagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaa |
311 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
244440 |
tatggtgaaattagtaaggatttggcaggacatagagctgtttggaagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaa |
244539 |
T |
|
| Q |
312 |
ctatattgaattttttggtatatagtccaaagggaac---tttgnnnnnnnnaagtctattgatgcatctgacattaccaaaactgctgataaa-atttt |
407 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
244540 |
ctatattgaattttttggtacatagtccaaagggagcttttttttttttttaaagtctattgatgcatctgacattaccaaaactgctaataaatttttt |
244639 |
T |
|
| Q |
408 |
taagatgattgatgatg |
424 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
244640 |
taagatgattgatgatg |
244656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 424
Target Start/End: Original strand, 15658310 - 15658719
Alignment:
| Q |
14 |
atcaatggtgtgtagaagatggaagaccgggaagatgcttgtaaggctattgctctcnnnnnnn-acaataatgttattcgatttaatggtgcaagctct |
112 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||| |||||| ||| |
|
|
| T |
15658310 |
atcaatggtgtgtggaagaaggagcaccgggaaaatgcttgtaaggctattgctctcttttttttacaataatgctatttcgtttaatgttgcaaggtct |
15658409 |
T |
|
| Q |
113 |
gatgagtattttaagatgtttaaatatgttgcaaagcatggtataatatttaagtcaccctcttatcacgagattagagttaaatatttggattatttct |
212 |
Q |
| |
|
||||| ||| ||||||||||| || ||||||||||||||||||| ||||||| ||| ||||||| | ||||||||| |||||||||| ||||||| | |
|
|
| T |
15658410 |
gatgaatatcttaagatgtttgaacttgttgcaaagcatggtataggatttaagccactctcttatgatgagattagaaataaatatttgaattattttt |
15658509 |
T |
|
| Q |
213 |
atggtgaaattagtaaggatttgactggacatagagttgtttgggagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaac |
312 |
Q |
| |
|
||||||||||| ||||||||||| | ||| |||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15658510 |
atggtgaaattggtaaggatttggaagcacacagagctgtttgggagaaatgtggttgcataattatgactgatggttggactgatagaaggagaagaac |
15658609 |
T |
|
| Q |
313 |
tatattgaattttttggtatatagtccaaagggaactttgnnnnnnnnaagtctattgatgcatctgacattaccaaaactgctgataaaatttttaaga |
412 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15658610 |
tatattgaattttttggtacatagtccaaagggaacttt--ttttttaaagtctattgatccatctgacattaccaaaactgctgataaaatttttaaga |
15658707 |
T |
|
| Q |
413 |
tgattgatgatg |
424 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15658708 |
tgattgatgatg |
15658719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 15501581 - 15501629
Alignment:
| Q |
361 |
aagtctattgatgcatctgacattaccaaaactgctgataaaattttta |
409 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
15501581 |
aagtctatagatgcatcacacattacaaaaactgctgataaaatcttta |
15501629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University