View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18838_low_4 (Length: 415)
Name: NF18838_low_4
Description: NF18838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18838_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 399
Target Start/End: Complemental strand, 36168 - 35779
Alignment:
| Q |
10 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctgtgaggttaacttttacatcagttacggtacaaacac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36168 |
ataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatgtgaaacctttgaggttaacttttacatcagttacggtacaaacac |
36069 |
T |
|
| Q |
110 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaaccacgggaatcatact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36068 |
caacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgttgtgaagaatcctttccataacacaaaccacgggaatcatact |
35969 |
T |
|
| Q |
210 |
caattttgatatctgtgaacatgcataatgtgagattgaacaactaaaaagtagaagcggagttaagacataaatatatgaatatcatctatatattagg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35968 |
caattttgatatctgtgaacatgcataatgtgagattgaacaactaaaaagtagaagcggagtgaagacataaatatatgaatatcatctatatattagg |
35869 |
T |
|
| Q |
310 |
agacacattaaaagtgagtgatagagatgaacatacgagtttgaaaacaatgtgacaaattgtcatttttcaaaagaatagacatgaaag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35868 |
agacacattaaaagtgagtgatagagatgaacatacgagtttgaaaacaatgtcacaaattgtcatttttcaaaagaatagacatgaaag |
35779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 8676538 - 8676696
Alignment:
| Q |
67 |
aaacctgtgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgt |
166 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| || || | |||||||| |||||| |||| ||| |
|
|
| T |
8676538 |
aaacctttgaagttaacatttacatcagttacggtgcaaacaccaacaccaataaccacaaccatgaccgacactttcacttcccttgagtagtgtttgc |
8676637 |
T |
|
| Q |
167 |
tgtgaagaatcctttccataacacaaaccacgggaatcatactcaattttgatatctgt |
225 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| |||||||| || | ||||||||||||| |
|
|
| T |
8676638 |
tgtgaaggatccattccatcacacaaaccaccggaatcatgcttagttttgatatctgt |
8676696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University