View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18838_low_5 (Length: 316)

Name: NF18838_low_5
Description: NF18838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18838_low_5
NF18838_low_5
[»] chr7 (18 HSPs)
chr7 (1-297)||(38340103-38340399)
chr7 (221-295)||(48062113-48062186)
chr7 (197-298)||(23048317-23048416)
chr7 (221-294)||(40417831-40417903)
chr7 (249-297)||(24532911-24532959)
chr7 (249-297)||(27568072-27568120)
chr7 (221-297)||(31445372-31445447)
chr7 (249-297)||(31675024-31675072)
chr7 (242-297)||(40227128-40227183)
chr7 (250-295)||(18856526-18856571)
chr7 (247-296)||(22540992-22541041)
chr7 (249-297)||(41650762-41650808)
chr7 (221-297)||(43942691-43942761)
chr7 (249-297)||(4292482-4292530)
chr7 (249-297)||(18505828-18505876)
chr7 (221-297)||(41189485-41189560)
chr7 (249-297)||(43025394-43025442)
chr7 (249-297)||(44895541-44895589)
[»] chr6 (9 HSPs)
chr6 (211-297)||(17551310-17551395)
chr6 (221-297)||(26595403-26595478)
chr6 (221-297)||(5694093-5694168)
chr6 (221-297)||(32316870-32316945)
chr6 (190-295)||(6271406-6271508)
chr6 (219-280)||(20998085-20998145)
chr6 (221-297)||(24900828-24900903)
chr6 (249-297)||(25811807-25811855)
chr6 (249-297)||(34047441-34047489)
[»] chr4 (25 HSPs)
chr4 (213-297)||(52223237-52223318)
chr4 (221-298)||(19473898-19473974)
chr4 (221-297)||(27051028-27051103)
chr4 (250-297)||(5249923-5249970)
chr4 (209-297)||(6520762-6520848)
chr4 (251-297)||(47288137-47288183)
chr4 (251-297)||(51324553-51324599)
chr4 (221-295)||(56474709-56474778)
chr4 (249-297)||(2268476-2268524)
chr4 (249-297)||(5622512-5622560)
chr4 (249-297)||(27354323-27354371)
chr4 (221-297)||(37997308-37997383)
chr4 (221-297)||(50721686-50721761)
chr4 (211-297)||(12387596-12387682)
chr4 (211-297)||(27371195-27371281)
chr4 (211-297)||(29891899-29891985)
chr4 (250-297)||(31559593-31559640)
chr4 (197-297)||(50831672-50831772)
chr4 (249-286)||(52430943-52430980)
chr4 (249-297)||(10250484-10250532)
chr4 (247-291)||(25221691-25221735)
chr4 (249-297)||(26732279-26732327)
chr4 (249-297)||(37297103-37297151)
chr4 (249-297)||(40348848-40348896)
chr4 (213-281)||(51852146-51852213)
[»] chr3 (29 HSPs)
chr3 (196-296)||(13348050-13348150)
chr3 (242-297)||(39629800-39629855)
chr3 (250-297)||(46966070-46966117)
chr3 (251-297)||(19960603-19960649)
chr3 (249-297)||(8847164-8847212)
chr3 (249-297)||(26014866-26014914)
chr3 (249-297)||(28700515-28700563)
chr3 (211-298)||(33791701-33791788)
chr3 (249-297)||(35597216-35597264)
chr3 (249-297)||(36670983-36671031)
chr3 (221-297)||(45711381-45711456)
chr3 (220-295)||(55361174-55361248)
chr3 (251-297)||(27511779-27511825)
chr3 (247-297)||(50559178-50559228)
chr3 (221-297)||(44413864-44413937)
chr3 (251-296)||(55322687-55322732)
chr3 (249-297)||(288780-288828)
chr3 (211-291)||(1795977-1796056)
chr3 (249-297)||(5244283-5244331)
chr3 (249-297)||(6178394-6178442)
chr3 (247-295)||(7668154-7668202)
chr3 (253-297)||(10811190-10811234)
chr3 (249-297)||(19149044-19149092)
chr3 (249-297)||(20547959-20548007)
chr3 (249-297)||(27541471-27541519)
chr3 (221-281)||(37056999-37057058)
chr3 (249-297)||(38926682-38926730)
chr3 (249-297)||(41505545-41505593)
chr3 (249-297)||(52326073-52326121)
[»] chr8 (15 HSPs)
chr8 (198-297)||(5740703-5740802)
chr8 (196-285)||(29025326-29025415)
chr8 (249-297)||(39211096-39211144)
chr8 (211-297)||(7598763-7598848)
chr8 (249-297)||(10692493-10692541)
chr8 (221-297)||(23754648-23754723)
chr8 (251-297)||(28756590-28756636)
chr8 (249-298)||(4132377-4132426)
chr8 (249-297)||(27854737-27854783)
chr8 (249-298)||(36816585-36816634)
chr8 (221-297)||(11253484-11253559)
chr8 (249-297)||(12898898-12898946)
chr8 (221-297)||(22719494-22719569)
chr8 (249-297)||(31249493-31249541)
chr8 (249-297)||(35067215-35067263)
[»] chr5 (12 HSPs)
chr5 (211-297)||(21136318-21136403)
chr5 (221-297)||(7287131-7287206)
chr5 (216-294)||(6596390-6596465)
chr5 (196-264)||(33655329-33655398)
chr5 (249-297)||(4719705-4719753)
chr5 (249-297)||(18660813-18660861)
chr5 (211-298)||(33958190-33958277)
chr5 (250-293)||(3935287-3935330)
chr5 (249-295)||(27487943-27487989)
chr5 (260-297)||(33599017-33599054)
chr5 (249-297)||(33037574-33037622)
chr5 (249-297)||(36739002-36739050)
[»] chr1 (27 HSPs)
chr1 (211-297)||(50775087-50775173)
chr1 (221-298)||(27533426-27533502)
chr1 (190-297)||(47398362-47398468)
chr1 (250-296)||(11597692-11597738)
chr1 (249-297)||(23645465-23645513)
chr1 (249-297)||(48261194-48261242)
chr1 (249-297)||(49065333-49065381)
chr1 (221-272)||(6693236-6693286)
chr1 (211-297)||(14983827-14983913)
chr1 (196-286)||(31827016-31827106)
chr1 (247-297)||(30735260-30735310)
chr1 (249-297)||(30570580-30570626)
chr1 (247-280)||(37610749-37610782)
chr1 (197-297)||(41507111-41507211)
chr1 (249-297)||(649823-649871)
chr1 (249-297)||(3851212-3851260)
chr1 (211-286)||(7275598-7275673)
chr1 (249-297)||(9566929-9566977)
chr1 (249-297)||(15470025-15470073)
chr1 (221-285)||(18512285-18512348)
chr1 (249-297)||(31088235-31088283)
chr1 (249-297)||(33100862-33100910)
chr1 (249-297)||(40680840-40680888)
chr1 (249-297)||(41677293-41677341)
chr1 (221-297)||(43775260-43775335)
chr1 (210-281)||(50824811-50824882)
chr1 (211-297)||(51436701-51436788)
[»] chr2 (18 HSPs)
chr2 (190-286)||(33583133-33583226)
chr2 (249-297)||(9194295-9194343)
chr2 (211-286)||(44977430-44977505)
chr2 (211-281)||(29712048-29712118)
chr2 (242-297)||(41042308-41042363)
chr2 (247-297)||(5054137-5054187)
chr2 (249-291)||(5427191-5427233)
chr2 (211-281)||(7648460-7648529)
chr2 (221-295)||(29879597-29879670)
chr2 (251-297)||(42430704-42430750)
chr2 (249-286)||(38911898-38911935)
chr2 (221-297)||(1352443-1352518)
chr2 (211-286)||(7663997-7664072)
chr2 (249-297)||(9207644-9207692)
chr2 (197-233)||(9634353-9634389)
chr2 (249-297)||(18254178-18254226)
chr2 (249-297)||(33737302-33737350)
chr2 (190-297)||(39147820-39147927)
[»] scaffold1956 (1 HSPs)
scaffold1956 (250-297)||(824-871)
[»] scaffold0087 (1 HSPs)
scaffold0087 (219-300)||(53301-53381)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 38340103 - 38340399
Alignment:
Q  1 cttctatgttcatgttggccacattccaaatgtgcataacttagctaaagatggtaagttaactaaacttgaattaaattaaattcgcacgaatggatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38340103 cttctatgttcatgttggccacattccaaatgtgcataacttagctaaagatggtaagttaactaaacttgaattaaattaaattctcacgaatggatat 38340202  T
Q  101 tgggtgataatcctataggctaattgaataattgtctctttcttagacttggtatataatgggttggggcatttattgtactcccgttaatttcaatgac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  38340203 tgggtgataatcctataggctaattgaataattgtctctttcttagacttggtatataatgggttggggcatttattgtgctcccattaatttcaatgac 38340302  T
Q  201 aacttgttgtacaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  38340303 aacttgttgtacaaccataatttacaaagaaaatgaggtgtttgagacaaaaaccaaaacaatagagagaaaaagtaaaaacataatgtgagtatga 38340399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 48062186 - 48062113
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    |||| |||||||||||||| || || | |||||||||||||||||||||| || ||||||||||||  |||||||    
T  48062186 tttataaagaaaatgaggtatt-gacacaaaaaccaaaacaatagagagagaaagtaaaaacataatatgagtat 48062113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 298
Target Start/End: Original strand, 23048317 - 23048416
Alignment:
Q  197 tgacaacttgttgtacaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatg 296  Q
    ||||||||| || |||||||||||||||||||||||| |  || ||||  || ||||||||||||||||||| | ||  |||||| |||| |||||||||    
T  23048317 tgacaacttattttacaaccataatttacaaagaaaaagtagtatttg-catgaaaaccaaaacaatagagatataatataaaaa-ataatgtgagtatg 23048414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 40417903 - 40417831
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagta 294  Q
    |||||||||||| |||||| || || |||||||||||| ||||||||| | || |||||||||||| |||||||    
T  40417903 tttacaaagaaagtgaggtatt-gacataaaaaccaaagcaatagagaaagaaagtaaaaacataatgtgagta 40417831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 24532911 - 24532959
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  24532911 aaaaaccaaagcaatagagagagaaagtaaaaacataatgtgagtatga 24532959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 27568120 - 27568072
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| || ||||||||||||  |||||||||    
T  27568120 aaaaaccaaaacaatagagagagaaagtaaaaacataatatgagtatga 27568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 31445447 - 31445372
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||| || |||| | ||||| |||| ||||||||||| || ||||||| |||| ||||||||||    
T  31445447 tttacaaagaaaatgag-tgattgacacaaaaatcaaagcaatagagagagaaagtaaaaatataatgtgagtatga 31445372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 31675024 - 31675072
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| |||||||||||||| ||||||||| || ||||||||||    
T  31675024 aaaaaccaaatcaatagagagaaaaagtaaaaacaaaatgtgagtatga 31675072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 40227128 - 40227183
Alignment:
Q  242 ttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||| ||||||| |||||||||| ||||||||  ||||||||||| ||||||||||    
T  40227128 ttgacataaaaatcaaaacaataaagagaaaatataaaaacataatgtgagtatga 40227183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 18856571 - 18856526
Alignment:
Q  250 aaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    |||| |||||||||||||||| || |||||||||||| ||||||||    
T  18856571 aaaatcaaaacaatagagagagaaagtaaaaacataatgtgagtat 18856526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 22540992 - 22541041
Alignment:
Q  247 ataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatg 296  Q
    ||||||||||||| |||||||||| || ||||||| |||| |||||||||    
T  22540992 ataaaaaccaaaataatagagagagaaagtaaaaatataatgtgagtatg 22541041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 41650808 - 41650762
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||||||  ||||||||| || ||||||||||    
T  41650808 aaaaaccaaaacaatagagagaaa--gtaaaaacaaaatgtgagtatga 41650762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 43942761 - 43942691
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||      | |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  43942761 tttacaaagaaaatgaggtg------acaaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 43942691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 4292530 - 4292482
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| |||| ||||||||||| || |||||||||||| ||||||||||    
T  4292530 aaaaatcaaagcaatagagagagaaagtaaaaacataatgtgagtatga 4292482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 18505876 - 18505828
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| |||||||||||||||| ||  ||||||||||| ||||||||||    
T  18505876 aaaaatcaaaacaatagagagagaaactaaaaacataatgtgagtatga 18505828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 41189485 - 41189560
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||| ||||||||| || || | |||||| ||| ||||||||||| || ||||||| |||| ||||||||||    
T  41189485 tttacaaaggaaatgaggtatt-gacacaaaaactaaagcaatagagagagaaagtaaaaagataatgtgagtatga 41189560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 43025442 - 43025394
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| |||||||||||||| ||||||| ||||  |||||||||    
T  43025442 aaaaaccaaagcaatagagagaaaaagtaaaaagataatatgagtatga 43025394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 44895541 - 44895589
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| ||||||||| |||||    
T  44895541 aaaaaccaaagcaatagagagagaaagtaaaaagataacgtgaatatga 44895589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 17551310 - 17551395
Alignment:
Q  211 acaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||| |||||| ||||||||||||| | |||| | |||||||||||||||||||||| || |||||||||||| ||||||||||    
T  17551310 acaaccaaaatttataaagaaaatgagg-gattgacacaaaaaccaaaacaatagagagataaagtaaaaacataatgtgagtatga 17551395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 26595478 - 26595403
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||| || || | |||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  26595478 tttacaaagaaaatgaggtatt-gacacaaaaaccaaagcaatagagagagaaagtaaaaacataatgtgagtatga 26595403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 5694093 - 5694168
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||| ||||||||| || || | ||||| ||||||||||||||||||| |||||||||||| |||| |||||    
T  5694093 tttacaaaggaaatgaggtatt-gacacaaaaatcaaaacaatagagagaaaaagtaaaaacataatgtgaatatga 5694168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 32316870 - 32316945
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||  | || | |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  32316870 tttacaaagaaaatgaggtact-gacacaaaaaccaaagcaatagagagataaagtaaaaagataatgtgagtatga 32316945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 6271508 - 6271406
Alignment:
Q  190 atttcaatgacaacttgttgtacaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgt 289  Q
    |||| ||||||||||| |  ||| | |||||||||||||||||| ||  |   ||| | |||||||||||||||||||||| || |||||||||||| ||    
T  6271508 attttaatgacaacttttgatacgatcataatttacaaagaaaaagatat---tgacacaaaaaccaaaacaatagagagagaaagtaaaaacataatgt 6271412  T
Q  290 gagtat 295  Q
     |||||    
T  6271411 aagtat 6271406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 20998085 - 20998145
Alignment:
Q  219 aatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaa 280  Q
    |||||||||||||||||||||  |||| | |||||||||| ||||||||||| || ||||||    
T  20998085 aatttacaaagaaaatgaggt-attgatacaaaaaccaaagcaatagagagagaaagtaaaa 20998145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 24900903 - 24900828
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||| || |||  | |||||||||| ||||||||||| || ||||||| |||| |||| |||||    
T  24900903 tttacaaagaaaatgag-tgattggcacaaaaaccaaagcaatagagagagaaagtaaaaatataatgtgaatatga 24900828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 25811807 - 25811855
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  25811807 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 25811855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 34047489 - 34047441
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| ||| |||||| |||| ||||||||||    
T  34047489 aaaaaccaaagcaatagagagataagataaaaagataatgtgagtatga 34047441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 52223318 - 52223237
Alignment:
Q  213 aaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||||||||  |||| | |||||||||||||||| |||||||  |||||||||||  ||||||||||    
T  52223318 aaccataatttacaaagaaaatgaggt-attgatacaaaaaccaaaacaatacagagaaa--gtaaaaacatattgtgagtatga 52223237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 19473898 - 19473974
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatgat 298  Q
    |||||||||||||||| || || || | ||||||||||||| ||||||||||| || ||||||||| |||||||||||    
T  19473898 tttacaaagaaaatgaagtatt-gacacaaaaaccaaaacattagagagaaaaagttaaaacataatgtgagtatgat 19473974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 27051028 - 27051103
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||| | || || | |||||||||||||||| ||||| |||||||||| |||| ||||||||||    
T  27051028 tttacaaagaaaatgagatatt-gacacaaaaaccaaaacaataaagagagaaggtaaaaagataatgtgagtatga 27051103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 5249970 - 5249923
Alignment:
Q  250 aaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||| || |||||||||||| ||||||||||    
T  5249970 aaaaccaaaacaatagagagagaaagtaaaaacataatgtgagtatga 5249923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 6520762 - 6520848
Alignment:
Q  209 gtacaaccataat-ttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||  || |||||||||  ||||||| || || |||||||||||||||||||||||  |||||||||||| ||||||||||    
T  6520762 gtacaaccataaaatttcaaagaaaaataggtgtt-gacatgaaaaccaaaacaatagagagaaa--gtaaaaacataatgtgagtatga 6520848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 47288183 - 47288137
Alignment:
Q  251 aaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  47288183 aaaccaaaacaatagagagaaaaagtaaaaatataacgcgagtatga 47288137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 51324553 - 51324599
Alignment:
Q  251 aaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||    
T  51324553 aaaccaaaataatagagagagaaagtaaaaacataacgtgagtatga 51324599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 56474709 - 56474778
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    ||||||||||||||||||| || || | ||||||||||||||||||||||    |||||||||||| ||||||||    
T  56474709 tttacaaagaaaatgaggtatt-gacacaaaaaccaaaacaatagagaga----gtaaaaacataatgtgagtat 56474778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 2268476 - 2268524
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||| |||||| ||||||| |||| ||||||||||    
T  2268476 aaaaaccaaaacaatagaaagaaaaagtaaaaagataatgtgagtatga 2268524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 5622560 - 5622512
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| |||||||||||||| ||||||| |||| ||||||||||    
T  5622560 aaaaaccaaagcaatagagagaaaaagtaaaaagataatgtgagtatga 5622512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 27354323 - 27354371
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| ||||||||| ||||||||| |||||||||||| ||||||||||    
T  27354323 aaaaatcaaaacaattgagagaaaaagtaaaaacataatgtgagtatga 27354371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 37997383 - 37997308
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||| || || | ||||| |||| ||||||||||| || ||||||| |||| ||||||||||    
T  37997383 tttacaaagaaaatgaggtatt-gacacaaaaatcaaagcaatagagagagaaagtaaaaagataatgtgagtatga 37997308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 50721686 - 50721761
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||| ||| |||| | |||||||||| || |||||||| || ||||||| |||| ||||||||||    
T  50721686 tttacaaagaaaatga-gtgattgacacaaaaaccaaagcagtagagagagaaagtaaaaatataatgtgagtatga 50721761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 12387596 - 12387682
Alignment:
Q  211 acaaccata-atttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||| ||||||||||||||||||||  |||| | ||||| |||||||||| ||||| || ||||||| |||| |||| |||||    
T  12387596 acaaccatatatttacaaagaaaatgaggt-attgacacaaaaatcaaaacaataaagagacaaagtaaaaatataatgtgattatga 12387682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 27371281 - 27371195
Alignment:
Q  211 acaaccataa-tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| |||||||||||||  |||| || || || |||||  |||||||||||||| || |||||| ||||||||||||||||    
T  27371281 acaaccataaatttacaaagaaaagtaggtatt-gacatgaaaactcaaacaatagagagagaaagtaaaagcataacgtgagtatga 27371195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 29891985 - 29891899
Alignment:
Q  211 acaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||| ||||| |||| ||||| |  || |||||||||||||||||||| ||| ||  ||||||||||| ||||||||||    
T  29891985 acaaccataattttacaaaaaaaaagaggtata-gacataaaaaccaaaacaatagaaagagaaactaaaaacataatgtgagtatga 29891899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 31559640 - 31559593
Alignment:
Q  250 aaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  31559640 aaaaccaaaacaatagagagagaaagtaaaaatataatgtgagtatga 31559593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 50831672 - 50831772
Alignment:
Q  197 tgacaacttgttgtacaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    ||||||||| | | ||||||||||||| |||||||||| ||||| || || | ||||| |||| ||||||||||| || ||||| |||| | ||||||||    
T  50831672 tgacaacttttgggacaaccataattttacaaagaaaaagaggtctt-gacacaaaaatcaaagcaatagagagagaaagtaaagacatgatgtgagtat 50831770  T
Q  296 ga 297  Q
    ||    
T  50831771 ga 50831772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 52430980 - 52430943
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataa 286  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  52430980 aaaaaccaaaataatagagagacaaggtaaaaacataa 52430943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 10250484 - 10250532
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  10250484 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 10250532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 25221691 - 25221735
Alignment:
Q  247 ataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtga 291  Q
    |||||||||||||||||||| ||| || |||||||||||| ||||    
T  25221691 ataaaaaccaaaacaatagaaagagaaagtaaaaacataatgtga 25221735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 26732327 - 26732279
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| ||  |||||| |||| ||||||||||    
T  26732327 aaaaaccaaaacaatagagagagaaaataaaaagataatgtgagtatga 26732279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 37297151 - 37297103
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  37297151 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 37297103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 40348896 - 40348848
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  40348896 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 40348848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 51852213 - 51852146
Alignment:
Q  213 aaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaa 281  Q
    ||||||||| |||||||||||||  || ||||  | |||||||||||||||||||||| || |||||||    
T  51852213 aaccataatctacaaagaaaatgtagtatttgc-acaaaaaccaaaacaatagagagataaagtaaaaa 51852146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 13348050 - 13348150
Alignment:
Q  196 atgacaacttgttgtacaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagta 294  Q
    |||||||||| | | ||||||| ||||| |||||||||||||||| || || | |||||||||| ||||||||||| ||||||||||||||  |||||||    
T  13348050 atgacaacttttgggacaaccaaaattttacaaagaaaatgaggtatt-gatacaaaaaccaaagcaatagagagagaaggtaaaaacatattgtgagta 13348148  T
Q  295 tg 296  Q
    ||    
T  13348149 tg 13348150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 39629800 - 39629855
Alignment:
Q  242 ttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||| ||||||| |||||||||||||||| || |||||||||||| ||||||||||    
T  39629800 ttgacataaaaatcaaaacaatagagagagaaagtaaaaacataatgtgagtatga 39629855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 46966070 - 46966117
Alignment:
Q  250 aaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||||    
T  46966070 aaaaccaaaacaatagatagagaaagtaaaaacataacgtgagtatga 46966117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 19960603 - 19960649
Alignment:
Q  251 aaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||    
T  19960603 aaaccaaaacaatagagagaaaaagtaaaaacataatgtaagtatga 19960649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 8847212 - 8847164
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||| |||||| ||||||| |||| ||||||||||    
T  8847212 aaaaaccaaaacaatagaaagaaaaagtaaaaaaataatgtgagtatga 8847164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 26014914 - 26014866
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  26014914 aaaaaccaaaacaatagagagagaaagtaaaaagataatgtgagtatga 26014866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 28700563 - 28700515
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  28700563 aaaaaccaaagcaatagagagagaaagtaaaaacataatgtgagtatga 28700515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 33791701 - 33791788
Alignment:
Q  211 acaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatgat 298  Q
    ||||||| ||||| |||||||||||||||| || || | ||||  |||||||||||||||  || |||||||||||| |||||||||||    
T  33791701 acaaccaaaatttcacaaagaaaatgaggtatt-gacacaaaagtcaaaacaatagagagggaaagtaaaaacataatgtgagtatgat 33791788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 35597264 - 35597216
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  35597264 aaaaaccaaaacaatagagagagaaagtaaaaaaataatgtgagtatga 35597216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 36670983 - 36671031
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| |||||||||||||| ||||||| |||| ||||||||||    
T  36670983 aaaaaccaaagcaatagagagaaaaagtaaaaagataatgtgagtatga 36671031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 45711381 - 45711456
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||| || || || | || ||||||||||||||||||| || ||||||| |||| ||||||||||    
T  45711381 tttacaaagaaaatgaagtatt-gacacaataaccaaaacaatagagagagaaagtaaaaagataatgtgagtatga 45711456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 55361174 - 55361248
Alignment:
Q  220 atttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    ||||||||||||||||| || || || | |||||||||| ||||||||||| || ||||||| |||| ||||||||    
T  55361174 atttacaaagaaaatgaagtatt-gacacaaaaaccaaagcaatagagagagaaagtaaaaaaataatgtgagtat 55361248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 27511825 - 27511779
Alignment:
Q  251 aaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||  || || ||||||||||||||||||||    
T  27511825 aaaccaaaacaatagagagtgaaagtgaaaacataacgtgagtatga 27511779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 50559178 - 50559228
Alignment:
Q  247 ataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||| |||||||||||||||| || |||||||||||| || |||||||    
T  50559178 ataaaaatcaaaacaatagagagagaaagtaaaaacataatgtaagtatga 50559228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 44413864 - 44413937
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||| | || || | |||||||||| ||||||||||  |||||||||| |||| ||||||||||    
T  44413864 tttacaaagaaaatgagatatt-gacacaaaaaccaaagcaatagagag--aaggtaaaaagataatgtgagtatga 44413937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 55322687 - 55322732
Alignment:
Q  251 aaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatg 296  Q
    ||||||||| |||||||||| || |||||||||||| |||||||||    
T  55322687 aaaccaaaaaaatagagagagaaagtaaaaacataatgtgagtatg 55322732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 288828 - 288780
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  288828 aaaaaccaaagcaatagagagagaaagtaaaaaaataatgtgagtatga 288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 1795977 - 1796056
Alignment:
Q  211 acaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtga 291  Q
    ||||||||| |||| |||||||||||||| ||  | | |||||| ||||||||| ||||| || |||||||||||| ||||    
T  1795977 acaaccatattttataaagaaaatgaggtatta-acacaaaaactaaaacaataaagagagaatgtaaaaacataatgtga 1796056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 5244331 - 5244283
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  5244331 aaaaaccaaagcaatagagagagaaagtaaaaaaataatgtgagtatga 5244283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 6178394 - 6178442
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| |||| ||||||||||| || |||||||||||| ||||||||||    
T  6178394 aaaaatcaaagcaatagagagagaaagtaaaaacataatgtgagtatga 6178442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 7668154 - 7668202
Alignment:
Q  247 ataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    |||||||||||| ||||||||||| || ||||||| |||| ||||||||    
T  7668154 ataaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtat 7668202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 10811234 - 10811190
Alignment:
Q  253 accaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||| ||||||||||| |||||||||||| || ||||||||||    
T  10811234 accaaagcaatagagagagaaggtaaaaacacaatgtgagtatga 10811190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 19149092 - 19149044
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||| ||||| || ||||||| |||| ||||||||||    
T  19149092 aaaaaccaaaacaataaagagagaaagtaaaaagataatgtgagtatga 19149044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 20547959 - 20548007
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| |||| ||||||||||| || ||||||| |||||||||||||||    
T  20547959 aaaaatcaaagcaatagagagagaaagtaaaaagataacgtgagtatga 20548007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 27541471 - 27541519
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  27541471 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 27541519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 37056999 - 37057058
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaa 281  Q
    ||||||||||||||||||| || || | |||||| ||||||||||||||| || |||||||    
T  37056999 tttacaaagaaaatgaggtatt-gacacaaaaacaaaaacaatagagagataaagtaaaaa 37057058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 38926730 - 38926682
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  38926730 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 38926682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 41505593 - 41505545
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  41505593 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 41505545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 52326121 - 52326073
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| || ||||||| |||| ||||| ||||    
T  52326121 aaaaaccaaaacaatagagagagaaagtaaaaagataatgtgagcatga 52326073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 5740703 - 5740802
Alignment:
Q  198 gacaacttgttgtacaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatg 296  Q
    |||||||| | | ||||||||||||| |||||||||| ||||| |  || | |||||||||||||||||||||| || |||||||||||| |||||||||    
T  5740703 gacaacttttaggacaaccataattttacaaagaaaaagaggtatc-gacacaaaaaccaaaacaatagagagagaaagtaaaaacataatgtgagtatg 5740801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 29025415 - 29025326
Alignment:
Q  196 atgacaacttgttgtacaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacata 285  Q
    |||||||||| | | ||||||| ||||| |||||||||||||||| || || | |||||||||| ||||||||||| ||||||||||||||    
T  29025415 atgacaacttttgggacaaccaaaattttacaaagaaaatgaggtatt-gacacaaaaaccaaagcaatagagagagaaggtaaaaacata 29025326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 39211144 - 39211096
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||    
T  39211144 aaaaaccaaaacaatagagagaaaaagtaaaaacaaaatgtgagtatga 39211096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 7598848 - 7598763
Alignment:
Q  211 acaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||| |||||||| ||||||| |||| || || |||||||||||||||||| |  || || |||||||||||| ||||||||||    
T  7598848 acaaccaaaatttacatagaaaataaggtatt-gacataaaaaccaaaacaatatattgagaaagtaaaaacataatgtgagtatga 7598763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 10692541 - 10692493
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  10692541 aaaaaccaaaacaatagagagagaaagtaaaaagataatgtgagtatga 10692493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 23754648 - 23754723
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||| || |||| | ||||||||||||||||| |||| || ||||||| ||||  |||||||||    
T  23754648 tttacaaagaaaatgag-tgattgacacaaaaaccaaaacaatagtgagataaagtaaaaatataatatgagtatga 23754723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 28756636 - 28756590
Alignment:
Q  251 aaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||||  |||||| |||| ||||||||||    
T  28756636 aaaccaaaacaatagagagaaaaaataaaaatataatgtgagtatga 28756590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 4132426 - 4132377
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatgat 298  Q
    |||||||||||||||||||||||||  | ||||||||| |||| ||||||    
T  4132426 aaaaaccaaaacaatagagagaaaaaatgaaaacataaagtgaatatgat 4132377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 27854737 - 27854783
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| ||||||||||||||||||  |||||||||||| ||||||||||    
T  27854737 aaaaatcaaaacaatagagagaaa--gtaaaaacataatgtgagtatga 27854783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 36816585 - 36816634
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatgat 298  Q
    ||||| |||| |||||||||||||| ||||||| |||| |||||||||||    
T  36816585 aaaaatcaaagcaatagagagaaaaagtaaaaagataatgtgagtatgat 36816634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 11253484 - 11253559
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||| || || | |||||||||| ||||||||||| ||  |||||| |||| || |||||||    
T  11253484 tttacaaagaaaatgaggtatt-gacacaaaaaccaaagcaatagagagagaaaataaaaagataatgtaagtatga 11253559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 12898898 - 12898946
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  12898898 aaaaaccaaagcaatagagagataaagtaaaaagataatgtgagtatga 12898946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 22719569 - 22719494
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||  |||  | |||||||||| ||||||||||| || ||||||| |||| ||||| ||||    
T  22719569 tttacaaagaaaatgaggtagttgc-acaaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagcatga 22719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 31249493 - 31249541
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  31249493 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 31249541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 35067263 - 35067215
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  35067263 aaaaaccaaagcaatagagagagaaagtaaaaatataatgtgagtatga 35067215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 21136403 - 21136318
Alignment:
Q  211 acaaccataatttacaaagaaaatg-aggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||| ||||||||| | |||| ||| | |||||||||||||||||||||||| || ||||||| |||||||||||||||    
T  21136403 acaaccataattttcaaagaaaaagtaggtattt-atataaaaaccaaaacaatagagagataaagtaaaaa-ataacgtgagtatga 21136318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 7287131 - 7287206
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||  | || | |||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  7287131 tttacaaagaaaatgaggtagt-gacacaaaaaccaaaacaatagagagagaaagtaaaaatataatgtgagtatga 7287206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 6596465 - 6596390
Alignment:
Q  216 cataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagta 294  Q
    ||||||||||||||||||||||||  || | | |||||||||| |||||||||||||  |||||||||||| |||||||    
T  6596465 cataatttacaaagaaaatgaggt-attaacacaaaaaccaaagcaatagagagaaa--gtaaaaacataatgtgagta 6596390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 33655329 - 33655398
Alignment:
Q  196 atgacaacttgttgtacaaccataa-tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaata 264  Q
    |||| ||||| | |||||||||||| |||| |||||||||||||| ||||| | ||||||||||||||||    
T  33655329 atgataacttttggtacaaccataaatttataaagaaaatgaggtatttgatacaaaaaccaaaacaata 33655398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 4719753 - 4719705
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| |||| |||||||||||||| |||||||||||| ||||||||||    
T  4719753 aaaaatcaaagcaatagagagaaaaagtaaaaacataatgtgagtatga 4719705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 18660861 - 18660813
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||||||||||||||    
T  18660861 aaaaaccaaagcaatagagagagaaagtaaaaagataacgtgagtatga 18660813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 33958190 - 33958277
Alignment:
Q  211 acaaccataa-tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatgat 298  Q
    |||||||||| ||||||||||||| ||| | || || | |||||||||| ||||||||||| || ||||||| |||| |||||||||||    
T  33958190 acaaccataaatttacaaagaaaaagagatatt-gacacaaaaaccaaagcaatagagagagaaagtaaaaatataatgtgagtatgat 33958277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 3935330 - 3935287
Alignment:
Q  250 aaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagt 293  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||    
T  3935330 aaaaccaaaacaatagagaggaaaagtaaaaacataatgtgagt 3935287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 27487989 - 27487943
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    |||||||||| ||||||||||| || ||||| |||||||||||||||    
T  27487989 aaaaaccaaagcaatagagagagaaagtaaatacataacgtgagtat 27487943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 33599054 - 33599017
Alignment:
Q  260 caatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  33599054 caatagagagaaaaagtaaaaacataatgtgagtatga 33599017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 33037622 - 33037574
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| |||| |||||||||||||| ||||||| |||| ||||||||||    
T  33037622 aaaaatcaaagcaatagagagaaaaagtaaaaagataatgtgagtatga 33037574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 36739050 - 36739002
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  36739050 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 36739002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 50775087 - 50775173
Alignment:
Q  211 acaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||| |||||||||| || ||||| || | |||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  50775087 acaaccataattttacaaagaaaaagatgtgtt-gacacaaaaaccaaagcaatagagagataaagtaaaaacataatgtgagtatga 50775173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 27533426 - 27533502
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatgat 298  Q
    ||||||||||||||||||| || || ||||||| |||||||||| ||||| || ||||||||||||  ||||||||||    
T  27533426 tttacaaagaaaatgaggtatt-gacataaaaatcaaaacaataaagagagaaagtaaaaacataatatgagtatgat 27533502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 47398362 - 47398468
Alignment:
Q  190 atttcaatgacaacttgttgtacaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgt 289  Q
    |||| ||||||||||| ||  |||||||||||||||||||| || |||||  |||| | || |||||| |||||| ||||| || || ||||||||| ||    
T  47398362 attttaatgacaactttttagacaaccataatttacaaagataaagaggt-attgacacaacaaccaagacaataaagagataaagtgaaaacataatgt 47398460  T
Q  290 gagtatga 297  Q
    ||||||||    
T  47398461 gagtatga 47398468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 11597738 - 11597692
Alignment:
Q  250 aaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatg 296  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||    
T  11597738 aaaaccaaaacaatagagagagaaagtaaaaacataatgtgagtatg 11597692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 23645513 - 23645465
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  23645513 aaaaaccaaaacaatagagagagaaagtaaaaagataatgtgagtatga 23645465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 48261242 - 48261194
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  48261242 aaaaaccaaagcaatagagagagaaagtaaaaacataatgtgagtatga 48261194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 49065333 - 49065381
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||||||    
T  49065333 aaaaaccaaagcaatagagagagaaagtaaaaacataatgtgagtatga 49065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 6693286 - 6693236
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaa 272  Q
    ||||||||| ||||||||| || || ||||||||||||||||||||||||||    
T  6693286 tttacaaaggaaatgaggtatt-gacataaaaaccaaaacaatagagagaaa 6693236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 14983913 - 14983827
Alignment:
Q  211 acaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||| |||||||||| ||| | || || | |||||| ||||||||||||||| || |||||||||||| |||| |||||    
T  14983913 acaaccataatttcacaaagaaaaagagatatt-gacacaaaaactaaaacaatagagagagaaagtaaaaacataatgtgaatatga 14983827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 31827106 - 31827016
Alignment:
Q  196 atgacaacttgttgtacaaccataattt-acaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataa 286  Q
    |||||||||| |  |||||||| ||||| ||||| |||||||| | || || | |||||||||| ||||||||||||| |||||||||||||    
T  31827106 atgacaacttttgatacaaccaaaattttacaaaaaaaatgagttatt-gacacaaaaaccaaatcaatagagagaaagggtaaaaacataa 31827016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 30735260 - 30735310
Alignment:
Q  247 ataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||| ||||||||||||||| || ||||||| |||| ||||||||||    
T  30735260 ataaaaactaaaacaatagagagagaaagtaaaaaaataatgtgagtatga 30735310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 30570626 - 30570580
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| ||||||||||||||||||  |||||||||||| ||||||||||    
T  30570626 aaaaatcaaaacaatagagagaaa--gtaaaaacataatgtgagtatga 30570580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 37610749 - 37610782
Alignment:
Q  247 ataaaaaccaaaacaatagagagaaaaggtaaaa 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  37610749 ataaaaaccaaaacaatagagagaaaaagtaaaa 37610782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 41507111 - 41507211
Alignment:
Q  197 tgacaacttgttgtacaaccataatttacaaagaaaatg-aggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    ||||||||| ||  ||||| ||||||||||||||||| | ||||  |||| || |||||||||| |||||| ||| || |||| ||||||| ||||||||    
T  41507111 tgacaacttatttgacaactataatttacaaagaaaaagtaggt-attgacatgaaaaccaaaataatagatagataaagtaagaacataatgtgagtat 41507209  T
Q  296 ga 297  Q
    ||    
T  41507210 ga 41507211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 649871 - 649823
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  649871 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 649823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 3851260 - 3851212
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||||  | ||||||| |||| ||||||||||    
T  3851260 aaaaaccaaaacaatagagagatcaagtaaaaagataatgtgagtatga 3851212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 7275598 - 7275673
Alignment:
Q  211 acaaccataa-tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataa 286  Q
    |||||||||| |||||||||||||| |||| ||| | || |||||||||| |||||||||| ||  |||||||||||    
T  7275598 acaaccataaatttacaaagaaaattaggtattt-atatgaaaaccaaaataatagagagataaactaaaaacataa 7275673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 9566929 - 9566977
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| |||||||| || || |||||||||||| ||||||||||    
T  9566929 aaaaaccaaagcaatagagtgagaaagtaaaaacataatgtgagtatga 9566977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 15470025 - 15470073
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| ||  |||||| |||| ||||||||||    
T  15470025 aaaaaccaaaacaatagagagagaaaataaaaagataatgtgagtatga 15470073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 18512285 - 18512348
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacata 285  Q
    |||| |||||||||||||| || || |||||||| ||| ||||||||||| || |||||||||||    
T  18512285 tttataaagaaaatgaggtatt-gacataaaaactaaagcaatagagagataaagtaaaaacata 18512348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 31088283 - 31088235
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  31088283 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 31088235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 33100910 - 33100862
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||| |||||||||||||||| || ||||||| |||| ||||||||||    
T  33100910 aaaaatcaaaacaatagagagagaaagtaaaaagataatgtgagtatga 33100862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 40680888 - 40680840
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||  |||| ||||| ||||||||||||||| ||||||||||    
T  40680888 aaaaaccaaagtaatatagagagaaggtaaaaacataatgtgagtatga 40680840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 41677293 - 41677341
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| ||  |||||| |||| ||||||||||    
T  41677293 aaaaaccaaaacaatagagagataaaataaaaatataatgtgagtatga 41677341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 43775335 - 43775260
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||| | || || | |||||| ||||||||||||||| || ||||||| |||| | ||||||||    
T  43775335 tttacaaagaaaatgagatatt-gatacaaaaactaaaacaatagagagagaaagtaaaaagataatgcgagtatga 43775260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 50824882 - 50824811
Alignment:
Q  210 tacaaccataatttacaaagaaaatg-aggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaa 281  Q
    |||||||||||||||||||||||| | ||||  |||| || ||||||||| ||||||||||| || |||||||    
T  50824882 tacaaccataatttacaaagaaaaagtaggt-attgacatgaaaaccaaagcaatagagagataaagtaaaaa 50824811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 51436701 - 51436788
Alignment:
Q  211 acaaccata-atttacaaagaaaatg-aggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||| |||||||||||||| | |||| || || || ||||||||||||||| ||||| || ||||||||| || ||||||||||    
T  51436701 acaaccatagatttacaaagaaaaagtaggtatt-gacatgaaaaccaaaacaataaagagataaagtaaaaacaaaatgtgagtatga 51436788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 33583133 - 33583226
Alignment:
Q  190 atttcaatgacaacttgttgtacaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataa 286  Q
    |||| ||||| ||||| | | ||||| |||||||||||||||||||||||  |||| | ||||| ||||||||||||||||||  ||||||||||||    
T  33583133 attttaatgataacttatggaacaactataatttacaaagaaaatgaggt-attgacaaaaaaaacaaaacaatagagagaaa--gtaaaaacataa 33583226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 9194343 - 9194295
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  9194343 aaaaaccaaaacaatagagagagaaagtaaaaagataatgtgagtatga 9194295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 44977430 - 44977505
Alignment:
Q  211 acaaccataa-tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataa 286  Q
    |||||||||| ||||||||||||||| ||| || || | |||||||||| ||||||||||| || ||||||||||||    
T  44977430 acaaccataaatttacaaagaaaatggggtatt-gacacaaaaaccaaagcaatagagagagaaagtaaaaacataa 44977505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 29712118 - 29712048
Alignment:
Q  211 acaaccataatttacaaagaaaatg-aggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaa 281  Q
    ||||||||||||||||||||||| | |||| ||||  |||||||||||| ||||||||||| || |||||||    
T  29712118 acaaccataatttacaaagaaaaagtaggtatttgc-ataaaaaccaaagcaatagagagataaagtaaaaa 29712048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 41042363 - 41042308
Alignment:
Q  242 ttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||| |||||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  41042363 ttgacataaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 41042308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 5054137 - 5054187
Alignment:
Q  247 ataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||| |||||||||||||||| |||  |||||||||||| |||||||||    
T  5054137 ataaaagccaaaacaatagagaggaaaaataaaaacataacatgagtatga 5054187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 5427191 - 5427233
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtga 291  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||    
T  5427191 aaaaaccaacacaatagagagaaaaagtaaaaacataatgtga 5427233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 7648529 - 7648460
Alignment:
Q  211 acaaccataatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaa 281  Q
    |||| |||||||||||||||||| || || ||||  | |||||||||||||||||||||| || |||||||    
T  7648529 acaatcataatttacaaagaaaaagaagtatttgc-acaaaaaccaaaacaatagagagataaagtaaaaa 7648460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 29879597 - 29879670
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtat 295  Q
    ||||||||||||||| | | ||| | |||||||| |||| |||| |||||||| ||||||||||||||| |||||    
T  29879597 tttacaaagaaaatgtgatattt-acataaaaactaaaataataaagagaaaaagtaaaaacataacgtaagtat 29879670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 42430750 - 42430704
Alignment:
Q  251 aaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    ||||||||||||||||||||  | |||||||||||| ||||||||||    
T  42430750 aaaccaaaacaatagagagaggaagtaaaaacataatgtgagtatga 42430704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 38911898 - 38911935
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataa 286  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  38911898 aaaaacgaaaacaatagagagaaaaagtaaaaacataa 38911935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 1352518 - 1352443
Alignment:
Q  221 tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||||||||| ||| |||  | |||||||||| ||||||||| | || ||||||| |||| ||||||||||    
T  1352518 tttacaaagaaaatga-gtgattggcacaaaaaccaaagcaatagagaaataaagtaaaaatataatgtgagtatga 1352443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 7663997 - 7664072
Alignment:
Q  211 acaaccataa-tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataa 286  Q
    |||||||||| ||||||||||||| ||||| || || | |||||||||| ||||||||||| || ||||||| ||||    
T  7663997 acaaccataaatttacaaagaaaaagaggtatt-gacacaaaaaccaaagcaatagagagagaaagtaaaaatataa 7664072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 9207692 - 9207644
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  9207692 aaaaaccaaagcaatagagagagaaagtaaaaaaataatgtgagtatga 9207644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 9634353 - 9634389
Alignment:
Q  197 tgacaacttgttgtacaaccataatttacaaagaaaa 233  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  9634353 tgacaactttttgaacaaccataatttacaaagaaaa 9634389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 18254178 - 18254226
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||||||||| || ||||||| |||| ||||||||||    
T  18254178 aaaaaccaaagcaatagagagagaaagtaaaaagataatgtgagtatga 18254226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 33737302 - 33737350
Alignment:
Q  249 aaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| ||||  ||||| || |||||||||||||||||||||||    
T  33737302 aaaaaccaaagcaattcagagagaaagtaaaaacataacgtgagtatga 33737350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 39147927 - 39147820
Alignment:
Q  190 atttcaatgacaacttgttgtacaaccataa-tttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacg 288  Q
    |||| ||||||||||| | | |||| ||||| |||||||| |||||||||| || || | ||||| |||||||||| | ||| || |||||||||||| |    
T  39147927 attttaatgacaacttttgggacaatcataaatttacaaaaaaaatgaggtatt-gacacaaaaatcaaaacaatacaaagagaaagtaaaaacataatg 39147829  T
Q  289 tgagtatga 297  Q
    ||| |||||    
T  39147828 tgaatatga 39147820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 871 - 824
Alignment:
Q  250 aaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatga 297  Q
    |||||||||| |||||||||| || ||||||| |||||||||||||||    
T  871 aaaaccaaaataatagagagataaagtaaaaaaataacgtgagtatga 824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 53301 - 53381
Alignment:
Q  219 aatttacaaagaaaatgaggtgtttgagataaaaaccaaaacaatagagagaaaaggtaaaaacataacgtgagtatgatga 300  Q
    |||||| |||||||||||| | || || | |||||| ||||||| ||||||| ||  ||||||||||| |||||||||||||    
T  53301 aatttataaagaaaatgagatatt-gacacaaaaactaaaacaaaagagagagaaaataaaaacataatgtgagtatgatga 53381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University