View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18838_low_8 (Length: 210)
Name: NF18838_low_8
Description: NF18838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18838_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 40178823 - 40179003
Alignment:
| Q |
11 |
cgaagaatattgaatccttctttggaagttcattcattagagtaaaagcacannnnnnngctatatgaatgaatgaaagtatctcatctttcattctcat |
110 |
Q |
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| T |
40178823 |
cgaaaaatattgaatccttctttggaagttcattcattagagtaaaagcacatttttttgctatatgaatgaatgaaagtatctcatctttcattctcat |
40178922 |
T |
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| Q |
111 |
ttctcaaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgagtctccaact |
191 |
Q |
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| T |
40178923 |
ttctcaaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgagtctccaact |
40179003 |
T |
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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 6226477 - 6226411
Alignment:
| Q |
116 |
aaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgag |
182 |
Q |
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| T |
6226477 |
aaagcttaacataatgtcagaaatgtgtgaaccaaattcagagaaagttggtgaaattagtgctgag |
6226411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 6226550 - 6226478
Alignment:
| Q |
18 |
tattgaatccttctttggaagttcattca-ttagagtaaaagcacannnnnnngctatatgaatgaatgaaag |
89 |
Q |
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| T |
6226550 |
tattgaatccttctttgaaagttcattcacttagtgtaaaagcacatttttttactatatgaatgaatgaaag |
6226478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 1786699 - 1786637
Alignment:
| Q |
116 |
aaagtttagcataatgtcagagatgtgtgaaccaaattcagagaaagctagtgaaattagtgctgag |
182 |
Q |
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| T |
1786699 |
aaagtttaacataacgtcagagatgtgtggaccaatttcagagaa----agtgaaattagtgctgag |
1786637 |
T |
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