View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_high_16 (Length: 275)
Name: NF18839_high_16
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 48255743 - 48255985
Alignment:
| Q |
22 |
tgatgtagattgttgattaccaatgaaatcaatcacaagtctcccatcagaagctctaccggctggtttattgaagtaagtcattccataaggaccagat |
121 |
Q |
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| T |
48255743 |
tgatgtagattgttgattaccaatgaaatcaatcacaagtctcccatcagaagctcgaccagctggtttattgaagtaagtcattccataaggaccagat |
48255842 |
T |
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| Q |
122 |
tcagcaggaaaagctgcataaaagccaccagtatctgaatttgaatctccaaagttgaaaatagccttgaaatcacattcaccttgactcaaaccaacca |
221 |
Q |
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| T |
48255843 |
tcagcaggaaaagctgcataaaagccaccagtatctgaatttgaatctccaaagttgaaaatagccttgaaatcacattcaccttgactcaaaccaacca |
48255942 |
T |
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| Q |
222 |
aacaaggcaacacaagcatgaaaatgaacaacaatatattcat |
264 |
Q |
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| T |
48255943 |
aacaaggcaacacaagcatgaaaatgaacaacaatatattcat |
48255985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 10497022 - 10496970
Alignment:
| Q |
128 |
ggaaaagctgcataaaagccaccagtatctgaatttgaatctccaaagttgaa |
180 |
Q |
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| T |
10497022 |
ggaaatgctgaataaaatccacctgtatccgaatttgaatctccaaagttgaa |
10496970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 37439329 - 37439295
Alignment:
| Q |
146 |
ccaccagtatctgaatttgaatctccaaagttgaa |
180 |
Q |
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| T |
37439329 |
ccaccagtatcagaatttgaatctccaaagttgaa |
37439295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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