View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_high_2 (Length: 781)
Name: NF18839_high_2
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 662; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 765
Target Start/End: Original strand, 41900997 - 41901765
Alignment:
| Q |
1 |
ataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgaggtgatt |
100 |
Q |
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| T |
41900997 |
ataagaagcataagttctaacccaatgccttgtcacacttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgaggtgatt |
41901096 |
T |
|
| Q |
101 |
aaagctgttaacattaatttaaaaa-caatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtat |
199 |
Q |
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| T |
41901097 |
aaagctgttaatattgatttaaaaaacaatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtat |
41901196 |
T |
|
| Q |
200 |
tggaagcagaatatggtcctcctttcttgacactgtgccacacttctttcagttccttgnnnnnnnggggcttcttgttgttttccaaggatttaaaacc |
299 |
Q |
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| T |
41901197 |
tggaagcagaatacggtcctcctttcttgacactgtgccacacttctttcagttccttgaaaaaaaggggcttctggttgttctccaaggatttaaaacc |
41901296 |
T |
|
| Q |
300 |
agaatctctacatttatcttgatcctaatataaatgtatgaaacacattaattaacgaatagagttgttaggaaat---tttatgtatattacagcataa |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |
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| T |
41901297 |
agaatctctacatttatcttgatcctaatataaatgtatgaaacacattaattaacgaatagagttattaggaaatgattttatgtataaaacagcataa |
41901396 |
T |
|
| Q |
397 |
gcgagtatacgaacccaaacaaatagtagcttgtttttcaattctccaatggcacaggctaaagcatcatcaatattatgcctaattatcaattacaata |
496 |
Q |
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| T |
41901397 |
gcgagtatacgaacccaaacaaatagtagcttgtttttcaattctccgatggcacaggctaaagcatcatcaatattatgcctaattattaattacaata |
41901496 |
T |
|
| Q |
497 |
aaaaggatacagtttaagatcaagtaattaatcaaatttaaagaggaaaaaagggaagaaatgaaatagaagatcagcgttactgactccattgcagaag |
596 |
Q |
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| T |
41901497 |
aaaaggatacagtttaagatcaagtaattaatcaaatttaaagaggaaaaaagggaagaaatgaaatagaagatcagcgttactgactccattgcagaag |
41901596 |
T |
|
| Q |
597 |
accagagtcccacttcaaatctttccaggcagaatttcataaattcttcgctaaatggcctcttaaaagctgcaccaaatttacgactaattaatagtca |
696 |
Q |
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| T |
41901597 |
accagagtcccacttcaaatctttccaagcagaatttaataaattcttcgctaaatggcctcttaaaaactgcaccaaatttccgactaattaatagtca |
41901696 |
T |
|
| Q |
697 |
ttaattaaaattcattcaagtattatataaagcagataataaaaagaaatataaagtgtatgttgagtt |
765 |
Q |
| |
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| T |
41901697 |
ttaattaaaattcattcaagtattatataaagcatataataaaaagaaatataaagtgtatgttgagtt |
41901765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 41895945 - 41896303
Alignment:
| Q |
1 |
ataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaat---tgatgtattgggctgcaatttgaggtg |
97 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||| | |||||||| | || | |||||| ||||||||||||||||||||||||||| |
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| T |
41895945 |
ataagaagcataagttctaacccagtgccttgtcatccttgtcctcaggatcatatgacttaggaaaaataattgatgtattgggctgcaatttgaggtg |
41896044 |
T |
|
| Q |
98 |
attaaagctgttaacatta-atttaaaaaca-------atattagta------aaaacaagtgaactaccggattaagcaaggacttgtatggtttgtca |
183 |
Q |
| |
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|||||||||||||| ||| ||| ||||||| |||||| || |||||||||||| |||||||||||| || |||||||||||||||||| |
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| T |
41896045 |
attaaagctgttaatatttgattcaaaaacagttttttatattaatataaagaaaaacaagtgaattaccggattaaggaaagacttgtatggtttgtca |
41896144 |
T |
|
| Q |
184 |
tcaattagcaaggtattggaagcagaatatggtcctcctttcttgacactgtgccacacttctttcagttccttgnnnnnnnggggcttcttgttgtttt |
283 |
Q |
| |
|
|| || ||||| ||||| ||||||||||| |||||||||||||||| | ||| |||||||| ||||||||| ||| | || ||||| ||||| | |
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| T |
41896145 |
tcgatcagcaacgtatttgaagcagaatacggtcctcctttcttgatagtgtcccacacttttttcagttctttgaaaaagagaggtttcttattgttct |
41896244 |
T |
|
| Q |
284 |
ccaaggatttaaaaccagaatctctacatttatcttgatcctaatataaatgtatgaaa |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
41896245 |
ccaaggatttaaaaccagaatctctacatttatgttgatcctaaaataaatatatgaaa |
41896303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 660
Target Start/End: Original strand, 41896542 - 41896627
Alignment:
| Q |
575 |
gttactgactccattgcagaagaccagagtcccacttcaaatctttccaggcagaatttcataaattcttcgctaaatggcctctt |
660 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
41896542 |
gttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
41896627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 41891125 - 41891246
Alignment:
| Q |
136 |
aaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgacactgt |
235 |
Q |
| |
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||||||| ||| | || ||||||||| |||||| |||||||| || ||||||| | ||||||||| |||||||||||||| | ||||||||||||| | |
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| T |
41891125 |
aaaaacatgtgcattaacggattaaggaaggacctgtatggtctggcatcaatcatcaaggtatttgaagcagaatatggacatcctttcttgacatcat |
41891224 |
T |
|
| Q |
236 |
gccacacttctttcagttcctt |
257 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
41891225 |
cccacacttcttttagttcctt |
41891246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 576 - 660
Target Start/End: Complemental strand, 41829151 - 41829067
Alignment:
| Q |
576 |
ttactgactccattgcagaagaccagagtcccacttcaaatctttccaggcagaatttcataaattcttcgctaaatggcctctt |
660 |
Q |
| |
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||||||||| | ||||||||| ||| | || |||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
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| T |
41829151 |
ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
41829067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 576 - 660
Target Start/End: Original strand, 41885561 - 41885645
Alignment:
| Q |
576 |
ttactgactccattgcagaagaccagagtcccacttcaaatctttccaggcagaatttcataaattcttcgctaaatggcctctt |
660 |
Q |
| |
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| T |
41885561 |
ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
41885645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 660
Target Start/End: Original strand, 41891821 - 41891889
Alignment:
| Q |
592 |
agaagaccagagtcccacttcaaatctttccaggcagaatttcataaattcttcgctaaatggcctctt |
660 |
Q |
| |
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|||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||| |
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| T |
41891821 |
agaagaccagaggcccacttcaaatctttctaagcagaatttcataaattcttcagtaaatggtctctt |
41891889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 34454271 - 34454209
Alignment:
| Q |
168 |
cttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
230 |
Q |
| |
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||||||||||||||||||||| | ||| ||||| |||||||||||||| |||||||||||||| |
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| T |
34454271 |
cttgtatggtttgtcatcaatcatcaaagtattagaagcagaatatggacctcctttcttgac |
34454209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 608 - 660
Target Start/End: Complemental strand, 34453802 - 34453750
Alignment:
| Q |
608 |
acttcaaatctttccaggcagaatttcataaattcttcgctaaatggcctctt |
660 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
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|
| T |
34453802 |
acttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
34453750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 476
Target Start/End: Original strand, 41896394 - 41896461
Alignment:
| Q |
409 |
acccaaacaaatagtagcttgtttttcaattctccaatggcacaggctaaagcatcatcaatattatg |
476 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||| ||||| ||||||||| |||||| |||||| |
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|
| T |
41896394 |
acccaaacaaatagtagcttgtttttcgaatcgccaatagcacatgctaaagcaccatcaacattatg |
41896461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 41885112 - 41885185
Alignment:
| Q |
154 |
ggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttctt |
227 |
Q |
| |
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||||||| |||||||| |||| |||||||||||| | ||| ||||| |||||||||||||| |||| |||||| |
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| T |
41885112 |
ggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcttttctt |
41885185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 41829544 - 41829477
Alignment:
| Q |
163 |
aaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
230 |
Q |
| |
|
|||||||| |||| |||||||||||| | ||| ||||| |||| |||||||| |||||||||||||| |
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|
| T |
41829544 |
aaggacttatatgctttgtcatcaatcatcaaagtattagaaggagaatatgagcctcctttcttgac |
41829477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 41891019 - 41891064
Alignment:
| Q |
6 |
aagcataagttctaacccaatgccttgtcacgcttgtccactggat |
51 |
Q |
| |
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||||||||||||||||||| ||| ||||||| ||||||| |||||| |
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| T |
41891019 |
aagcataagttctaacccagtgctttgtcacccttgtcctctggat |
41891064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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