View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_high_21 (Length: 240)
Name: NF18839_high_21
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 39882388 - 39882594
Alignment:
| Q |
13 |
attattctcactcattcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc |
112 |
Q |
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| T |
39882388 |
attattctcactcgttcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaagtttcccctcttactctaatctctcgtggaacacccc |
39882487 |
T |
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| Q |
113 |
taaatccacaaatttctttatacaaaaacctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt |
212 |
Q |
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|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
39882488 |
taaatccacaaatttccttatacaaaaaact----attaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatttcctt |
39882583 |
T |
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| Q |
213 |
gtgcaagttct |
223 |
Q |
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||||||||||| |
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| T |
39882584 |
gtgcaagttct |
39882594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 11037171 - 11037013
Alignment:
| Q |
43 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
141 |
Q |
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|||| |||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
11037171 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcgtggaccaccccctaaatcctcaaatttctttatacaaaaac |
11037072 |
T |
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| Q |
142 |
ctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcacc |
204 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11037071 |
ctattaaa----agagaatgaaaatgagttgccacacccacaccacacgtcatgatcatcacc |
11037013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 13164193 - 13164035
Alignment:
| Q |
43 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
141 |
Q |
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|||| |||||||||| |||||||| |||||| ||||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||||||||||| |
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| T |
13164193 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcatgaaacaccccctaaatcctcaaatttctttatacaaaaac |
13164094 |
T |
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| Q |
142 |
ctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcacc |
204 |
Q |
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||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13164093 |
ctattaaa----agataatgaaaatgagttgccacacccacaccagacgtcatgatcatcacc |
13164035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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