View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_high_4 (Length: 540)
Name: NF18839_high_4
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 9123568 - 9123235
Alignment:
| Q |
14 |
aagaatatgctgaaaagtatacaaaaa-caacttgacttgtaaggaaagtctacaaatcaacaaaattaaaaaccaaagaaggtcgttgctgtacaattt |
112 |
Q |
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| T |
9123568 |
aagaaaatgctgaaaagtatacaaaaaacaacttgacttgtaaggaaagtctacaaatcaacaaaattaaaaaccaaagaaggtcgttgctgtacaattt |
9123469 |
T |
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| Q |
113 |
caattgccttgctctactcctaatacaattgtagacactctaagaatagatgaaaccttaatctattcagaaatattttaaatacnnnnnnnnnntctaa |
212 |
Q |
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| T |
9123468 |
caattgccttgctctactcctaatacaattgtagacactctaagaatagatgaaaccttcatctattcaaaaatattttaaata-taaaaaaaattctaa |
9123370 |
T |
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| Q |
213 |
tttatagggcatacatgtgcat-aaaaaataatttaaaaggacgccattcctgtcatatgcaattgagtgggagtcgtaggatagtttgagaaaagaaca |
311 |
Q |
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| T |
9123369 |
tttatagggcatacatgtgcataaaaaaataatttaaaagtaaaccattcctgtcatatgcaattgaatgggagtc--------gtttgagagaagaaca |
9123278 |
T |
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| Q |
312 |
tatgaattgaatgataaatagattgagttcaaatttgtcttat |
354 |
Q |
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| T |
9123277 |
tatgaattgaatgataaatagattaagttcaaatttgtcttat |
9123235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 412 - 540
Target Start/End: Complemental strand, 9122722 - 9122585
Alignment:
| Q |
412 |
tataatataatcaactgcactatcaattttttcacc---------aagactatcatattagtcactaaagaaactgtgttgaagtgcaacaaaaatattt |
502 |
Q |
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| T |
9122722 |
tataatataatcaactgcactatcaattttttcacctagactaataagactatcatattagtcactaaagaaaatgtgttgcagtgcaacaaaaatattt |
9122623 |
T |
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| Q |
503 |
ggttgattataaacatgagcgattcttatctagtcaca |
540 |
Q |
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| T |
9122622 |
ggttgattacaaacatgagagattcttatctagtcaca |
9122585 |
T |
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