View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18839_high_5 (Length: 501)

Name: NF18839_high_5
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18839_high_5
NF18839_high_5
[»] chr8 (13 HSPs)
chr8 (4-103)||(9225234-9225333)
chr8 (13-101)||(39617123-39617211)
chr8 (13-101)||(12497989-12498076)
chr8 (20-102)||(18380577-18380660)
chr8 (20-111)||(6421683-6421775)
chr8 (60-102)||(40560562-40560604)
chr8 (60-101)||(13276687-13276728)
chr8 (60-110)||(36892597-36892647)
chr8 (60-101)||(16431318-16431359)
chr8 (60-101)||(16881249-16881290)
chr8 (60-101)||(22516985-22517025)
chr8 (60-101)||(29073951-29073992)
chr8 (60-101)||(33444424-33444465)
[»] chr1 (19 HSPs)
chr1 (13-104)||(41400340-41400431)
chr1 (13-101)||(45542187-45542275)
chr1 (13-103)||(21327399-21327489)
chr1 (13-101)||(2028595-2028683)
chr1 (20-110)||(18415313-18415404)
chr1 (20-101)||(49008948-49009029)
chr1 (13-101)||(2844668-2844755)
chr1 (20-102)||(32518972-32519055)
chr1 (13-102)||(28640795-28640884)
chr1 (20-102)||(8111465-8111547)
chr1 (20-101)||(24780642-24780723)
chr1 (60-101)||(16661991-16662032)
chr1 (60-101)||(38297049-38297090)
chr1 (60-101)||(42438824-42438865)
chr1 (20-101)||(38980336-38980416)
chr1 (60-101)||(13499688-13499729)
chr1 (60-101)||(20279593-20279634)
chr1 (60-101)||(24452288-24452329)
chr1 (60-101)||(32052906-32052947)
[»] chr5 (17 HSPs)
chr5 (13-101)||(39560384-39560472)
chr5 (13-102)||(22493708-22493797)
chr5 (13-101)||(40835810-40835898)
chr5 (13-104)||(1593774-1593865)
chr5 (13-101)||(5807563-5807651)
chr5 (13-101)||(16485715-16485802)
chr5 (13-99)||(39005653-39005739)
chr5 (20-101)||(16483275-16483357)
chr5 (60-102)||(23104630-23104672)
chr5 (60-101)||(25340113-25340154)
chr5 (60-101)||(28907544-28907585)
chr5 (60-101)||(28943939-28943980)
chr5 (60-101)||(1209774-1209815)
chr5 (60-101)||(36786619-36786660)
chr5 (21-101)||(22383866-22383946)
chr5 (60-101)||(14459026-14459067)
chr5 (60-101)||(22718527-22718568)
[»] chr4 (12 HSPs)
chr4 (13-101)||(1244720-1244808)
chr4 (13-102)||(27019513-27019603)
chr4 (20-100)||(39296644-39296724)
chr4 (13-101)||(48430194-48430282)
chr4 (60-112)||(7512596-7512648)
chr4 (20-101)||(5948965-5949047)
chr4 (60-101)||(4946332-4946373)
chr4 (60-103)||(6248255-6248298)
chr4 (60-101)||(9765473-9765514)
chr4 (60-101)||(27074189-27074230)
chr4 (60-101)||(27154280-27154321)
chr4 (13-50)||(34807058-34807095)
[»] chr7 (13 HSPs)
chr7 (13-102)||(46809808-46809897)
chr7 (20-103)||(21949070-21949153)
chr7 (13-101)||(6617799-6617886)
chr7 (20-104)||(31078711-31078795)
chr7 (20-101)||(34637713-34637795)
chr7 (20-101)||(42054404-42054486)
chr7 (60-102)||(44042488-44042530)
chr7 (60-101)||(18781563-18781604)
chr7 (60-99)||(35508001-35508040)
chr7 (60-101)||(35116493-35116534)
chr7 (60-101)||(37313028-37313069)
chr7 (13-105)||(9174102-9174193)
chr7 (60-102)||(47397650-47397692)
[»] chr3 (13 HSPs)
chr3 (13-102)||(4061612-4061700)
chr3 (20-101)||(22403145-22403226)
chr3 (13-102)||(37969945-37970033)
chr3 (20-101)||(3335179-3335260)
chr3 (13-94)||(28413297-28413378)
chr3 (13-102)||(33950910-33950999)
chr3 (60-102)||(35347752-35347794)
chr3 (60-101)||(10118748-10118789)
chr3 (60-102)||(43847952-43847994)
chr3 (60-103)||(54613304-54613347)
chr3 (60-101)||(23305494-23305535)
chr3 (60-97)||(26702550-26702587)
chr3 (60-101)||(38187506-38187547)
[»] chr6 (7 HSPs)
chr6 (13-101)||(15152881-15152969)
chr6 (20-101)||(18898118-18898200)
chr6 (60-103)||(9699928-9699971)
chr6 (60-101)||(4268566-4268607)
chr6 (13-102)||(22515302-22515391)
chr6 (60-102)||(1424562-1424604)
chr6 (60-101)||(14183123-14183164)
[»] scaffold0088 (1 HSPs)
scaffold0088 (20-102)||(26463-26545)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-101)||(193875-193957)
[»] chr2 (7 HSPs)
chr2 (13-83)||(40268530-40268600)
chr2 (60-103)||(12253590-12253633)
chr2 (60-101)||(39118927-39118968)
chr2 (60-101)||(42839915-42839956)
chr2 (60-101)||(4647225-4647266)
chr2 (60-102)||(6909152-6909194)
chr2 (60-101)||(42227260-42227301)
[»] scaffold0007 (1 HSPs)
scaffold0007 (60-101)||(14249-14290)
[»] scaffold0047 (1 HSPs)
scaffold0047 (60-101)||(50606-50647)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 9225234 - 9225333
Alignment:
4 atgtcgaagaatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtta 103  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||||    
9225234 atgtcaaataatatctaaaaaacttatttatgtgtaaaccctgttaaaatattttaaataaaatgtatcccgtgcttggcacggggcgttacactagtta 9225333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 39617211 - 39617123
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||| ||| ||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||    
39617211 aatatctaaaaaacttatctatatgtaaaccctgttaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 39617123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 12498076 - 12497989
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||||||| |||||||||||    
12498076 aatatctaaaaaacttatttatgtgtaaacc-tgttaaattgttttatataaaatgtatcccgtgcttggcacggggcgttacactagt 12497989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 18380660 - 18380577
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    ||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||| ||||||||||||    
18380660 aaaaaacttatttatgtgtaaaccctgttaaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagtt 18380577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 6421683 - 6421775
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagttatctacatt 111  Q
    ||||||||||||||||||||||| ||||||||        || |||||||||||||||||||||||||||| ||||||||||| || ||||||    
6421683 aaaaaacttatttatgtgtaaactctgttaaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagtaatatacatt 6421775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 40560562 - 40560604
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
40560562 aataaaatgtatcccgtgcttggcacggggcgttacactagtt 40560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 13276728 - 13276687
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
13276728 aataaaatgtatcccgtgcttggcacggggcgttacactagt 13276687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 36892647 - 36892597
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagttatctacat 110  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||| |||||    
36892647 aataaaatgtatcccgtgtttggcacggggcgttacaccagttatttacat 36892597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 16431318 - 16431359
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||  |||||||||||    
16431318 aataaaatgtatcccgtgcttggcacgggacgttacactagt 16431359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 16881290 - 16881249
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
16881290 aataaaatgaatcccgtgcttggcacgggaagttacactagt 16881249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 22516985 - 22517025
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
22516985 aataaaatgtatcccgtgcttggcac-gggcgttacactagt 22517025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 29073992 - 29073951
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
29073992 aataaaatgaatcccgtgcttggcacgggaagttacactagt 29073951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 33444424 - 33444465
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
33444424 aataaaatgtattccgtacttggcacggggcgttacactagt 33444465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 41400431 - 41400340
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagttat 104  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||    
41400431 aatatctaaaaaacttatttatgtgtaaaccctgttaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagttat 41400340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 45542187 - 45542275
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||| |||||||||||    
45542187 aatatctaaaaaacttatttatgtgtaaaccctattaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 45542275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 21327489 - 21327399
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtta 103  Q
    |||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||| ||||||||    
21327489 aatatctaaaaaacgtatttatgtgtaaaccctgttaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttatactagtta 21327399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 2028595 - 2028683
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||| ||||||    
2028595 aatatctaaaaaacgtatttatgtgtaaaccctgttaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttatactagt 2028683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 18415313 - 18415404
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagttatctacat 110  Q
    ||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||| ||||||||||||||| ||||    
18415313 aaaaaacttatttatgtgtaaaccctgttaaattttttttaaataaaatgtatcccgtgcttggcacggggcgttacactagttatcaacat 18415404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 49008948 - 49009029
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||  ||||||||||    
49008948 aaaaaacttatttatgtgtaaaccctgttaaaacattttaaataaaatgtatcccgtgcttggcacggggcattacactagt 49009029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 2844668 - 2844755
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||| | ||||||||        |||||||||||||||||||||||||||||| |||||||||||    
2844668 aatatctaaaaaacttatttatgtgtaatctctgttaaaaaattta-aataaaatgtatcccgtgcttggcacggggcgttacactagt 2844755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 32519055 - 32518972
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    ||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||| ||||||||||||    
32519055 aaaaaacttatttatgtgtaaaccctgttaaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagtt 32518972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 28640884 - 28640795
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||| ||| | ||||||||||||||        ||||||||||||||||| |||||||||||| ||||||||||||    
28640884 aatatctaaaaaacttatctatttttaaaccctgttaaaaaaatttaaataaaatgtatcccgtacttggcacggggcgttacactagtt 28640795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 8111465 - 8111547
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||| | |||||||||||||| ||| ||||||||    
8111465 aaaaaacttatttatgtgtaaaccctgttaaacatatttaaataaaatgtatctcatgcttggcacggggcgttgcactagtt 8111547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 24780642 - 24780723
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||  ||||||||||||||        |||||||||||||| ||||||||||||||| |||||||||||    
24780642 aaaaaacttatttatgcataaaccctgttaaaaaaatttaaataaaatgtatcctgtgcttggcacggggcgttacactagt 24780723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 16662032 - 16661991
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
16662032 aataaaatgtatcccgtgcttggcacggggcgttacactagt 16661991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 38297049 - 38297090
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
38297049 aataaaatgtatcccgtgcttggcacggggcgttacactagt 38297090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 42438824 - 42438865
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
42438824 aataaaatgtatcccgtgcttggcacggggcgttacactagt 42438865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 38980416 - 38980336
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||| |||||| ||||||||        |||||||| ||||||||||||| ||||||| |||||||||||    
38980416 aaaaaacttatttatgggtaaactctgttaaaaaattta-aataaaatatatcccgtgcttgacacggggcgttacactagt 38980336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 13499688 - 13499729
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||| | |||| ||||||    
13499688 aataaaatgtatcccgtgcttggcacggagcgttatactagt 13499729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 20279593 - 20279634
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
20279593 aataaaatgaatcccgtgcttggcacgggaagttacactagt 20279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 24452329 - 24452288
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||| ||||||||||||||||||||  |||||||||||    
24452329 aataaaatatatcccgtgcttggcacgggacgttacactagt 24452288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 32052906 - 32052947
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
32052906 aataaaatgtatcccgtgcttgacacgggacgttacactagt 32052947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 39560472 - 39560384
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||    
39560472 aatatctaaaaaacttatttatgtgtaaaccctgttaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 39560384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 22493797 - 22493708
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||| ||||||||||||    
22493797 aatatctaaaaaacttatttatgtgtaaaccctgttaaaaaaatttaaataaaatgtatcccgtgcttagcacggggcgttacactagtt 22493708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 40835810 - 40835898
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||    
40835810 aatatctaaaaaacgtatttatgtgtaaaccctgttaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 40835898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 1593865 - 1593774
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagttat 104  Q
    |||||||||||||| |||||||||||||||||| |||||        |||||||||||||||||||||||||||||| ||||||||||||||    
1593865 aatatctaaaaaacgtatttatgtgtaaacccttttaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttacactagttat 1593774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 5807651 - 5807563
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||| ||||||||||||||||||||        ||||||||||||| |||||||||||||||| |||||||||||    
5807651 aatatctaaaaaacttatctatgtgtaaaccctgttaaaaaaatttaaataaaatgtatctcgtgcttggcacggggcgttacactagt 5807563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 16485715 - 16485802
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||    
16485715 aatatctaaaaaacttatt-atgtgtaaaccctgttaaaatattttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 16485802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 39005653 - 39005739
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacacta 99  Q
    ||||| |||||||||||||||||||||||||||||||||        ||||||||||||||||| |||||||||||| |||||||||    
39005653 aatatttaaaaaacttatttatgtgtaaaccctgttaaaaaaatttaaataaaatgtatcccgtacttggcacggggcgttacacta 39005739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 16483275 - 16483357
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||  ||||||        || |||||||||||||||||||||||||||| |||||||||||    
16483275 aaaaaacttatttatgtgtaaacctagttaaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 16483357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 23104672 - 23104630
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
23104672 aataaaatgtatcccgtgcttggcacggggcgttacactagtt 23104630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 25340113 - 25340154
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
25340113 aataaaatgtatcccgtgcttggcacggggcgttacactagt 25340154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 28907585 - 28907544
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
28907585 aataaaatgtatcccgtgcttggcacggggcgttacactagt 28907544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 28943980 - 28943939
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
28943980 aataaaatgtatcccgtgcttggcacggggcgttacactagt 28943939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 1209815 - 1209774
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||  |||||||||||    
1209815 aataaaatgtatcccgtgcttggcacgggacgttacactagt 1209774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 36786660 - 36786619
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
36786660 aataaaatatatcccgtgcttggcacggggcgttacactagt 36786619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 22383946 - 22383866
Alignment:
21 aaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||| |||||||||||||| |||||         ||||||||| |||||||||||||||||||  |||||||||||    
22383946 aaaaacttaattatgtgtaaaccccgttaattttttttaaataaaatgaatcccgtgcttggcacgggaagttacactagt 22383866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 14459026 - 14459067
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||| || || ||||||||    
14459026 aataaaatgtatcccgtgcttggcacgaggcgtaacactagt 14459067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 22718568 - 22718527
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
22718568 aataaaatgtatcccgtacttggcacgaggcgttacactagt 22718527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 1244808 - 1244720
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| || |||||||||||    
1244808 aatatctaaaaaacttatttatgtgtaaaccctgttaaaaaaatttaaataaaatgtatcccgtgcttggcacgaggcgttacactagt 1244720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 27019603 - 27019513
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcac-ggggtgttacactagtt 102  Q
    ||||||||| |||||||||||||||||||||||||||||        ||||||||||||| |||||||||||| |||||||||||||||||    
27019603 aatatctaataaacttatttatgtgtaaaccctgttaaaaaaatttaaataaaatgtatctcgtgcttggcacgggggtgttacactagtt 27019513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 39296644 - 39296724
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactag 100  Q
    |||||||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||| ||||||||||    
39296644 aaaaaacttatttatgtgtaaaccctattaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttacactag 39296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 48430194 - 48430282
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||  || |||||||||||    
48430194 aatatctaaaaaacttatttatgtgtaaaccatgttaaaatattttaaataaaatgtatcccgtgcttggcacatggcgttacactagt 48430282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 7512596 - 7512648
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagttatctacattt 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||    
7512596 aataaaatgtatcccgtgcttggcacggggcgttacactagttatatacattt 7512648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 5948965 - 5949047
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||  |||||||||||    
5948965 aaaaaacttatttatgtgtaaaccctgttaaaaaaaatttaaataaaatgtatcccgtgcttggcacgggacgttacactagt 5949047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 4946332 - 4946373
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
4946332 aataaaatgtatcccgtgcttggcacggggcgttacactagt 4946373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 6248298 - 6248255
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtta 103  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
6248298 aataaaatgtatcccgtgcttggcacggggcattacactagtta 6248255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 9765514 - 9765473
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
9765514 aataaaatatatcccgtgcttggcacggggcgttacactagt 9765473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 27074189 - 27074230
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||  |||||||||||    
27074189 aataaaatgtatcccgtgcttggcacgggacgttacactagt 27074230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 27154280 - 27154321
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||  |||||||||||    
27154280 aataaaatgtatcccgtgcttggcacgggacgttacactagt 27154321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 34807058 - 34807095
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaa 50  Q
    |||||||||||||||||||||||||||||| |||||||    
34807058 aatatctaaaaaacttatttatgtgtaaactctgttaa 34807095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 46809808 - 46809897
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||| ||||| ||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||    
46809808 aatatctaaaaaacttatctatgtataaaccctgttaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagtt 46809897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 21949153 - 21949070
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtta 103  Q
    |||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||||||| |||||||||||||    
21949153 aaaaaacttatttatgtgtaaatcctgttaaaattttttaaataaaatgtatcccgtgcttggcacggggcgttacactagtta 21949070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 6617799 - 6617886
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||| |||||||||||||| ||||        |||||||||||||||||||||||||||||| |||||||||||    
6617799 aatatctaaaaaacttatt-atgtgtaaaccctgataaaatattttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 6617886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 31078795 - 31078711
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagttat 104  Q
    |||||||||||||||||||||||| |||||||        ||||||||||||| |||| ||||||||||| ||||||||||||||    
31078795 aaaaaacttatttatgtgtaaaccttgttaaaaaattataaataaaatgtatctcgtggttggcacggggcgttacactagttat 31078711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 34637795 - 34637713
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||  |||||||||||    
34637795 aaaaaacttatttatgtgtaaaccctgttaaaaaaaatttaaataaaatgtatcccgtgcttggcacgggacgttacactagt 34637713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 42054404 - 42054486
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||| ||||||        || |||||||||||||||||||||||||||| |||||||||||    
42054404 aaaaaacttatttatgtgtaaacccagttaaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 42054486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 44042530 - 44042488
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
44042530 aataaaatgtatcccgtgcttggcacggggcgttacactagtt 44042488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 18781604 - 18781563
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
18781604 aataaaatgtatcccgtgcttggcacggggcgttacactagt 18781563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 35508001 - 35508040
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacacta 99  Q
    |||||||||||||||||||||||||||||| |||||||||    
35508001 aataaaatgtatcccgtgcttggcacggggcgttacacta 35508040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 35116493 - 35116534
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
35116493 aataaaatgtatcccgtgcttgacacggggcgttacactagt 35116534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 37313069 - 37313028
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
37313069 aataaaatgtatcccgtgcttgacacggggcgttacactagt 37313028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 9174193 - 9174102
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagttatc 105  Q
    |||| ||||||||||||||||||| ||||||||||||||        |||||||| ||||||||   |||||||||| ||| |||||||||||    
9174193 aatacctaaaaaacttatttatgtataaaccctgttaaa-aaatttaaataaaatatatcccgtatatggcacggggcgtttcactagttatc 9174102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 47397692 - 47397650
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    ||||||||| |||||||||||||||||||  ||||||||||||    
47397692 aataaaatgaatcccgtgcttggcacgggaagttacactagtt 47397650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 4061700 - 4061612
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    ||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||    
4061700 aatatctaaaaaacttatt-atgtgtaaaccctgttaaaatattttaaataaaatgtatcccgtgcttggcacggggcgttacactagtt 4061612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 22403145 - 22403226
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||||    
22403145 aaaaaacttatttatgtgtaaaccctgttaaaacattttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 22403226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 37969945 - 37970033
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    ||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||    
37969945 aatatctaaaaaacttatt-atgtgtaaaccctgttaaaatattttaaataaaatgtatcccgtgcttggcacggggcgttacactagtt 37970033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 3335260 - 3335179
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| || |||||||||||    
3335260 aaaaaacttatttatgtgtaaaccctgttaaaaaagtttaaataaaatgtatcccgtgcttggcacgaggcgttacactagt 3335179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 28413378 - 28413297
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgtta 94  Q
    ||||| |||||||||||||||||||||||||||||||||        ||||||||||||| |||| ||||||||||| ||||    
28413378 aatatttaaaaaacttatttatgtgtaaaccctgttaaaatattttaaataaaatgtatctcgtgtttggcacggggcgtta 28413297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 33950999 - 33950910
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    ||||||||||||||||||||||||| ||||| |||||||        ||||||||||||| |||||||| |||| || ||||||||||||    
33950999 aatatctaaaaaacttatttatgtgcaaaccttgttaaaacattttaaataaaatgtatctcgtgcttgacacgaggcgttacactagtt 33950910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 35347794 - 35347752
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
35347794 aataaaatgtatcccgtgcttggcacggggcgttacactagtt 35347752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 10118789 - 10118748
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
10118789 aataaaatgtatcccgtgcttggcacggggcgttacactagt 10118748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 43847952 - 43847994
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
43847952 aataaaatgtatcccgtgcttgacacggggcgttacactagtt 43847994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 54613304 - 54613347
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtta 103  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||    
54613304 aataaaatgtatcccatgcttgacacggggcgttacactagtta 54613347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 23305494 - 23305535
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
23305494 aataaaatgaatcccgtgcttggcacgggaagttacactagt 23305535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 26702587 - 26702550
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacac 97  Q
    |||||||||||||||||||||||||||||  |||||||    
26702587 aataaaatgtatcccgtgcttggcacgggacgttacac 26702550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 38187547 - 38187506
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
38187547 aataaaatgtatcccgtgcttgacacgggacgttacactagt 38187506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 15152969 - 15152881
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||| |||||||        |||||||||||||||||||||||||||||| |||| ||||||    
15152969 aatatctaaaaaacttatttatgtgtaaaccatgttaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttatactagt 15152881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 18898200 - 18898118
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||| |||||||||||    
18898200 aaaaaacttatttatgtgtaaaccctgttaaaaaaattttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 18898118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 9699971 - 9699928
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtta 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
9699971 aataaaatgtatcccgtgcttggcacggggcgttacactagtta 9699928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 4268607 - 4268566
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
4268607 aataaaatgtatcccgtgcttggcacggggcgttacactagt 4268566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 22515302 - 22515391
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||||||||||||||||||| ||||||||||||||        ||||||||||||| |||||   |||||||| ||| ||||||||    
22515302 aatatctaaaaaacttatttatgtataaaccctgttaaaaaaatttaaataaaatgtatcacgtgccaagcacggggggttgcactagtt 22515391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 1424604 - 1424562
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||||| ||||||||||||||||||||| |||||| |||||    
1424604 aataaaatatatcccgtgcttggcacggggcgttacattagtt 1424562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 14183123 - 14183164
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
14183123 aataaaatgtatcccgtacttggcacgaggcgttacactagt 14183164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 26463 - 26545
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||||| ||||| |||||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||    
26463 aaaaaatttattcatgtgtaaaccctgttaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagtt 26545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 193957 - 193875
Alignment:
20 aaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaa-taaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||| |||||||||||    
193957 aaaaaacttatttatgtgtaaaccctgttaaaaaaaatttaaataaaatgtatcccgtgcttggcacggggcgttacactagt 193875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 40268530 - 40268600
Alignment:
13 aatatctaaaaaacttatttatgtgtaaaccctgttaaannnnnnnnaataaaatgtatcccgtgcttggc 83  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||||||    
40268530 aatatctaaaaaacttatttatgtgtaaaccctgttaaaaaaatttaaataaaatatatcccgtgcttggc 40268600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 12253633 - 12253590
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtta 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
12253633 aataaaatgtatcccgtgcttggcacggggcgttacactagtta 12253590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 39118968 - 39118927
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
39118968 aataaaatgtatcccgtgcttggcacggggcgttacactagt 39118927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 42839956 - 42839915
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||||||||| |||||||||||    
42839956 aataaaatgtatcccgtgcttggcacggggcgttacactagt 42839915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 4647266 - 4647225
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
4647266 aataaaatatatcccgtgcttggcacggggcgttacactagt 4647225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 6909152 - 6909194
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagtt 102  Q
    |||| |||||||| |||||||||||||||| ||||||||||||    
6909152 aatataatgtatctcgtgcttggcacggggcgttacactagtt 6909194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 42227260 - 42227301
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
42227260 aataaaatgaatcccgtgcttggcacgggaagttacactagt 42227301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 14249 - 14290
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
14249 aataaaatgtatcccgtgcttggctcggggagttacactagt 14290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 50647 - 50606
Alignment:
60 aataaaatgtatcccgtgcttggcacggggtgttacactagt 101  Q
    ||||||||| |||||||||||||||||||  |||||||||||    
50647 aataaaatgaatcccgtgcttggcacgggaagttacactagt 50606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University