View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18839_high_8 (Length: 443)

Name: NF18839_high_8
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18839_high_8
NF18839_high_8
[»] chr6 (8 HSPs)
chr6 (111-425)||(33481614-33481931)
chr6 (119-203)||(3066409-3066494)
chr6 (140-202)||(33051359-33051422)
chr6 (139-204)||(19121443-19121509)
chr6 (16-50)||(33482008-33482042)
chr6 (141-205)||(8976996-8977061)
chr6 (136-189)||(27447203-27447256)
chr6 (151-187)||(22681922-22681958)
[»] chr4 (1 HSPs)
chr4 (119-204)||(19462980-19463065)
[»] chr7 (5 HSPs)
chr7 (115-187)||(35858805-35858877)
chr7 (155-204)||(39704318-39704368)
chr7 (139-197)||(7448981-7449040)
chr7 (137-202)||(39445822-39445888)
chr7 (136-203)||(13764926-13764994)
[»] chr1 (3 HSPs)
chr1 (119-213)||(2953291-2953384)
chr1 (137-202)||(42773296-42773362)
chr1 (137-189)||(28237350-28237402)
[»] chr5 (2 HSPs)
chr5 (119-189)||(31941068-31941138)
chr5 (137-197)||(29656066-29656127)
[»] chr8 (2 HSPs)
chr8 (137-197)||(9374612-9374673)
chr8 (121-174)||(27428256-27428309)
[»] chr3 (4 HSPs)
chr3 (133-202)||(38611608-38611677)
chr3 (151-202)||(11396751-11396803)
chr3 (136-186)||(52134621-52134671)
chr3 (139-202)||(13867399-13867463)
[»] scaffold0003 (1 HSPs)
scaffold0003 (136-189)||(40102-40155)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 111 - 425
Target Start/End: Complemental strand, 33481931 - 33481614
Alignment:
Q  111 caagaaattccaaaacaaacgagcgtcatattgcaacatgttaacttctccattg-tttatgacctgggaggtagcacgg-taaaagttttagtatgtca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||    
T  33481931 caagaaattccaaaacaaacgagcgtcatattgcaacatgttaacttctccattggtttatgacctgggcggtagcacgggtaaaagttttaatatgtca 33481832  T
Q  209 ataatgttgaaatgcattgatttgtatgctgggatatttggtgtgggtgcatcgatctaaccgacctttgtaaaattaaacagcaagttctagcttattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33481831 ataatgttgaaatgcattgatttgtatgctgggatatttggtgtgggtgcatcgatctaaccgacctttgtaaaattaaacagcaagttctagcttattt 33481732  T
Q  309 acagaaaagacaatgataaacaacttgtttacttaattctttatttcatcctatgatctgatattgcttttagaaggggga-aaaatatgaatttcatcc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33481731 acagaaaagacaatgataaacaacttgtttacttaattctttatttcatcctatgatctgatattgcttttagaagggggaaaaaatatgaatttcatcc 33481632  T
Q  408 ttttgaaaatgccaaact 425  Q
    ||||||||||||||||||    
T  33481631 ttttgaaaatgccaaact 33481614  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 3066409 - 3066494
Alignment:
Q  119 tccaaaacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagta 203  Q
    ||||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||||  || |||||||| |||||||||| |||||    
T  3066409 tccaaaataaacgggcgtcatattacaacatattaccttctccattgtttatgacccaggcggtagcacgggtaaaagttctagta 3066494  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 33051422 - 33051359
Alignment:
Q  140 attgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg-taaaagttttagt 202  Q
    |||||||||| ||| |||||||||||||||||||| ||| |||||||||| |||||||| ||||    
T  33051422 attgcaacatattaccttctccattgtttatgacccgggcggtagcacggataaaagttctagt 33051359  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 19121443 - 19121509
Alignment:
Q  139 tattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagtat 204  Q
    |||||||| || |||||||||||||||| ||||||| ||  |||||||| |||||||||| ||||||    
T  19121443 tattgcaatatattaacttctccattgtctatgacccggacggtagcacgggtaaaagttctagtat 19121509  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 33482042 - 33482008
Alignment:
Q  16 gaagaatcatatattttgatctttagtaagaagga 50  Q
    |||||||||||||| ||||||||||||||||||||    
T  33482042 gaagaatcatatatattgatctttagtaagaagga 33482008  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 8976996 - 8977061
Alignment:
Q  141 ttgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagtatg 205  Q
    |||||| || ||| ||| |||||||||||||||| ||| |||||||| |||||||||| |||||||    
T  8976996 ttgcaatatattagcttttccattgtttatgacccgggcggtagcacgggtaaaagttctagtatg 8977061  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 27447203 - 27447256
Alignment:
Q  136 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 189  Q
    |||||||| || |||||| ||| |||||||||||||||| ||| ||||||||||    
T  27447203 tcatattgtaatatgttagcttttccattgtttatgacccgggcggtagcacgg 27447256  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 22681922 - 22681958
Alignment:
Q  151 ttaacttctccattgtttatgacctgggaggtagcac 187  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  22681922 ttaacttttccattgtttatgacctgggcggtagcac 22681958  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 19462980 - 19463065
Alignment:
Q  119 tccaaaacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacggtaaaagttttagtat 204  Q
    ||||||| ||||| |||||||||| |||||| ||| |||||||| ||||||||||||||| ||||||||||||||| || ||||||    
T  19462980 tccaaaataaacgggcgtcatattacaacatattagcttctccactgtttatgacctgggcggtagcacggtaaaaattctagtat 19463065  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 35858805 - 35858877
Alignment:
Q  115 aaattccaaaacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcac 187  Q
    ||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||| ||  ||||||||    
T  35858805 aaattccaaaacaaatgggcgtcatgttgcaacatgttaacttttccattgtttatgacccggacggtagcac 35858877  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 39704368 - 39704318
Alignment:
Q  155 cttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagtat 204  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  39704368 cttctccattgtttatgacctgggcggtagcacgggtaaaagttatagtat 39704318  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 7449040 - 7448981
Alignment:
Q  139 tattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg-taaaagtt 197  Q
    |||||||| || |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  7449040 tattgcaatatattaacttctccattgtttatgactcgggcggtagcacggataaaagtt 7448981  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 39445822 - 39445888
Alignment:
Q  137 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagt 202  Q
    |||||| |||||| ||| ||||||| |||||||||||| ||| |||||||| |||||||||| ||||    
T  39445822 catattacaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagttctagt 39445888  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 13764926 - 13764994
Alignment:
Q  136 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagta 203  Q
    ||||||||||| || ||| ||| |||||||||||||||  ||| |||||||| |||||||||| |||||    
T  13764926 tcatattgcaatatattagcttttccattgtttatgactcgggcggtagcacgggtaaaagttctagta 13764994  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 2953291 - 2953384
Alignment:
Q  119 tccaaaacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacggtaaaagttttagtatgtcaataat 213  Q
    ||||||||||| | |||||||||| |||||| ||| |||||||||||||||||||  ||| |||| ||||| ||||||| ||||| |||||||||    
T  2953291 tccaaaacaaaagggcgtcatattacaacatattagcttctccattgtttatgactcgggcggtatcacgggaaaagttctagta-gtcaataat 2953384  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 42773296 - 42773362
Alignment:
Q  137 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagt 202  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| |||||||| |||||||||| ||||    
T  42773296 catattgcaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagttctagt 42773362  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 28237402 - 28237350
Alignment:
Q  137 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 189  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| ||||||||||    
T  28237402 catattgcaacatattaccttctcctttgtttatgacccgggtggtagcacgg 28237350  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 31941138 - 31941068
Alignment:
Q  119 tccaaaacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 189  Q
    ||||||||||||| || | |||||||||||| ||| ||||||||||||||||||||| || | ||||||||    
T  31941138 tccaaaacaaacgggcattatattgcaacatattagcttctccattgtttatgacctaggcgatagcacgg 31941068  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 29656127 - 29656066
Alignment:
Q  137 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagtt 197  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| |||||||| ||||||||||    
T  29656127 catattgcaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagtt 29656066  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 9374673 - 9374612
Alignment:
Q  137 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg-taaaagtt 197  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| |||||||||| ||||||||    
T  9374673 catattgcaacatattaccttctcctttgtttatgacccgggcggtagcacggataaaagtt 9374612  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 27428309 - 27428256
Alignment:
Q  121 caaaacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacc 174  Q
    |||| ||||||  |||||||||| ||||| | ||||||||||||||||||||||    
T  27428309 caaaccaaacggccgtcatattgtaacatataaacttctccattgtttatgacc 27428256  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 38611677 - 38611608
Alignment:
Q  133 gcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacggtaaaagttttagt 202  Q
    |||||||||| |||||| ||| |||||||||||||||||||  ||| |||| ||||| ||||||| ||||    
T  38611677 gcgtcatattacaacatattagcttctccattgtttatgactcgggcggtatcacgggaaaagttctagt 38611608  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 11396751 - 11396803
Alignment:
Q  151 ttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagt 202  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  11396751 ttaacttctccattgtttatgacccgggcggtagcacgggtaaaagttctagt 11396803  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 52134621 - 52134671
Alignment:
Q  136 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagca 186  Q
    ||||||||||| || ||| |||||||||||||||||||| ||| |||||||    
T  52134621 tcatattgcaatatattagcttctccattgtttatgacccgggcggtagca 52134671  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 13867463 - 13867399
Alignment:
Q  139 tattgcaacatgttaacttctccattgtttatgacctgggaggtagcacg-gtaaaagttttagt 202  Q
    |||||||| || ||| |||||||||||||||||||| | | ||||||||| ||||||||| ||||    
T  13867463 tattgcaatatattagcttctccattgtttatgacccgagcggtagcacgagtaaaagttctagt 13867399  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 40155 - 40102
Alignment:
Q  136 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 189  Q
    |||||||| || |||||| ||| |||||||||||||||| ||| ||||||||||    
T  40155 tcatattgtaatatgttagcttttccattgtttatgacccgggcggtagcacgg 40102  T

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