View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_high_9 (Length: 427)
Name: NF18839_high_9
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 53805765 - 53805382
Alignment:
| Q |
1 |
tcaaaatcatcttttagttctgattcagatgctgaacacgtcccactgcattctgaatcagaaccagaaccggaggatacagaagaaaattctcaattat |
100 |
Q |
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| T |
53805765 |
tcaaaatcatcttctagttctgattcagatgctgaacacgtcccgctgcattctgaatcagaaccagaaccggaggatacagaagaaaattctcaattat |
53805666 |
T |
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| Q |
101 |
gcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcctgataatgtgactttcatgacctacgtcaaacctatcta |
200 |
Q |
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| T |
53805665 |
gcactcacagttatagacgttatgattatctccaccacgacaccgttttatcctcagttcctgataatgtgactttcatgacctacgtcaaacctatcta |
53805566 |
T |
|
| Q |
201 |
cgattcctattctcctccgcctccgttgaataccaccgaaaacttttccggtttaaatccgccgtcaccgcctcctccgagcaactctgcttgggaattt |
300 |
Q |
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| T |
53805565 |
cgattcctattctcctccgcctccgtcgaataccaccggaaacttttccggtttaaatccgccgtcaccgcctcctccgagcaactctgcttgggaattt |
53805466 |
T |
|
| Q |
301 |
ttggacttctttgaaccgtacgagaaattcaaagtacgttacagtcacggtggggacggttacactgacaccaacataacggat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53805465 |
ttggacttctttgaaccgtacgagaaattcaaagtacgttacagtcacggtggggacggttacactgacaccagcataacggat |
53805382 |
T |
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