View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_1 (Length: 819)
Name: NF18839_low_1
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 169 - 447
Target Start/End: Complemental strand, 9721183 - 9720903
Alignment:
| Q |
169 |
gtggaagtaaacgccccaccaaataactttaaagtctttagctatgtttgttagtgcattgcaattactaatatgaacggttctcactattttctttcct |
268 |
Q |
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|||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
9721183 |
gtggaaataaacgccccagcaataaactttaaagtctttagctatgtttgttagtgcattgcagttactaatgtgaacagttctcactattttctttcct |
9721084 |
T |
|
| Q |
269 |
ttcagaatactcatacttcattattgtactct--attcttactattttgagtcaccaaatgacaactttttcataaagtttatgataatgtttagcctaa |
366 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9721083 |
ttcagaatactctaacttcattattgtactctctattcttactattttgagtcaccaaatgacaactttttcataaagtttatgataatgtttagcctaa |
9720984 |
T |
|
| Q |
367 |
aatgttatattcaaacaacatagagttttttacctgactcgaaatatgatgtctctgcggtccctaatcaaaagcgtgaca |
447 |
Q |
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| T |
9720983 |
aatgttatattcaaacaacatagagttttgtacctgactcgaaatatgatgtctctgcggtcactaattaaaagcgtgaca |
9720903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 466 - 590
Target Start/End: Original strand, 7603201 - 7603325
Alignment:
| Q |
466 |
tttcttacatgagtgcattatacaaaacacattcattttacatcacatgagcaaattctagaattcgatgacatcatagcctactaaaaatgttatttca |
565 |
Q |
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||||| || |||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||| | |||||||||||||||| |
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| T |
7603201 |
tttctcacttgagtgcattgtacaaaacacattcattctacatcacatgcgcaaattcttgaattcgatgacttcatagccaattaaaaatgttatttca |
7603300 |
T |
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| Q |
566 |
attcataactgagttggatgcaata |
590 |
Q |
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| T |
7603301 |
attcataactgagttggatacaata |
7603325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 461 - 604
Target Start/End: Complemental strand, 6803309 - 6803164
Alignment:
| Q |
461 |
gtatatttcttacatgagtgcattatacaaaacacattcattttacatcacatgagcaaattctagaattcgatgacatcatag--cctactaaaaatgt |
558 |
Q |
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|||| ||||| |||| ||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||| |||| | ||||| |||||||||||||| |
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| T |
6803309 |
gtatctttctcacattcgtgcattatacaaaacacattcattctacattacatgtgcaaattcttgaatttgatgtcttcatataccctactaaaaatgt |
6803210 |
T |
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| Q |
559 |
tatttcaattcataactgagttggatgcaatataggagtaaagaaa |
604 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
6803209 |
tatttcaattcataactgagttagatgcaatataggagtaaggaaa |
6803164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 441 - 597
Target Start/End: Original strand, 6465175 - 6465326
Alignment:
| Q |
441 |
cgtgacacaaaagtcttt-gagtatatttcttacatgagtgcattatacaaaacacattcattttacatcacatgagcaaattctagaattcgatgacat |
539 |
Q |
| |
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|||||||||||||| ||| |||||| ||| |||||||||||||||| |||||||||||||||||||||| | ||| | ||| |||||||||| | | |
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| T |
6465175 |
cgtgacacaaaagttttttgagtatcttt-ttacatgagtgcattaaacaaaacacattcattttacat-----gtgcacaatcttgaattcgatggctt |
6465268 |
T |
|
| Q |
540 |
catagcctactaaaaatgttatttcaattcataactgagttggatgcaatataggagt |
597 |
Q |
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|||||||||||||||| |||| ||| ||||||||| ||||||||| ||||||||||| |
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| T |
6465269 |
catagcctactaaaaaagttacttcgattcataacagagttggattgaatataggagt |
6465326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 661 - 775
Target Start/End: Complemental strand, 9720827 - 9720715
Alignment:
| Q |
661 |
gaatgacaaatgttagtgtattagttgttatgttagtannnnnnnnatctttctaagatttgaatcctaaatctttaacttcttaattactttaattcct |
760 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
9720827 |
gaatgataaatgttagtgtattagttgttatgttagttatttttctctctttctaagatttgaatcctaaatctttaacttcttaactactt--attcct |
9720730 |
T |
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| Q |
761 |
tagctaaaccgaatg |
775 |
Q |
| |
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|||||||||| |||| |
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| T |
9720729 |
tagctaaaccaaatg |
9720715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 482 - 592
Target Start/End: Complemental strand, 8537860 - 8537746
Alignment:
| Q |
482 |
attatacaaaacaca--ttcattttacatcacatgagcaaattctagaattcgatgacatcata--gcctactaaaaatgttatttcaattcataactga |
577 |
Q |
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||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||| | ||||| ||||||| |||||||||||||||||||||||||| |
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| T |
8537860 |
attatacaaaatacacgttcattttacatcacatttgcaaattcttgaattcgatggcttcatatagcctactgaaaatgttatttcaattcataactga |
8537761 |
T |
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| Q |
578 |
gttggatgcaatata |
592 |
Q |
| |
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||||||| |||||| |
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| T |
8537760 |
attggatggaatata |
8537746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 604
Target Start/End: Complemental strand, 6753453 - 6753389
Alignment:
| Q |
540 |
catagcctactaaaaatgttatttcaattcataactgagttggatgcaatataggagtaaagaaa |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||| |
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| T |
6753453 |
catagcctactaaaaatgttatttcaattcataaataagttggatacaatataggagtaaggaaa |
6753389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 709 - 777
Target Start/End: Original strand, 7603777 - 7603845
Alignment:
| Q |
709 |
ctttctaagatttgaatcctaaatctttaacttcttaattactttaattccttagctaaaccgaatgag |
777 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||| |||||| |
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| T |
7603777 |
ctttctaagatttgaatcctaaatctttaacttcttaactattttaattcattagctcaaccaaatgag |
7603845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 6804165 - 6804049
Alignment:
| Q |
115 |
atgcaaatagattgatatcaatcgcaatgaaattgtaaggtattttcnnnnnnngtggaagtaaacgccccaccaaataactttaaagtctttagctatg |
214 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| | |||| ||||||||||| |||||||||| ||||||| |||||||||| || |
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| T |
6804165 |
atgcaaatagattgagatcaatcacaatgaaattgtaagatgctttcaaaaagagtggaagtaaatgccccaccaataaacttta--gtctttagctgtg |
6804068 |
T |
|
| Q |
215 |
tttgttagtgcattgcaat |
233 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
6804067 |
tttgttagtgcattacaat |
6804049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 7602944 - 7603055
Alignment:
| Q |
194 |
actttaaagtctttagctatgtttgttagtgcattgcaattactaatatgaacggttctcactattttctttcctttcaga-----atactcatacttca |
288 |
Q |
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|||||||||||||||||| ||||||||||||| || || | |||||| ||||||||||||| |||||||||||| |||||||| ||||| |
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| T |
7602944 |
actttaaagtctttagctgtgtttgttagtgc-------ttgatattgtgaacgattctcactattttgtttcctttcagaatactatactcatgcttca |
7603036 |
T |
|
| Q |
289 |
ttattgtactctattctta |
307 |
Q |
| |
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||||||||||||||||||| |
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| T |
7603037 |
ttattgtactctattctta |
7603055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 6753599 - 6753521
Alignment:
| Q |
169 |
gtggaagtaaacgccccaccaaataactttaaagtctttagctatgtttgttagtgcattgcaattactaatatgaacg |
247 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| || ||||||||||||| | ||| | |||| |||||||| |
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| T |
6753599 |
gtggaagtaaatgccccaccaataaactttaaagtctttaactgtgtttgttagtgcttggcagtgactattatgaacg |
6753521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 800
Target Start/End: Complemental strand, 6803052 - 6802962
Alignment:
| Q |
710 |
tttctaagatttgaatcctaaatctttaacttcttaattactttaattccttagctaaaccgaatgagctaccgaacccttcgcattggtg |
800 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| | ||| |||||||| | | |||| | ||||||| | |||||| |||| ||||| |
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| T |
6803052 |
tttctaagatttgaatcctaaatctttagcttcttaacttcttaaattccttcgtttaaccaagtgagctatccaaccctccgcaatggtg |
6802962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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