View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_10 (Length: 391)
Name: NF18839_low_10
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 32824507 - 32824885
Alignment:
| Q |
1 |
ataaaatcccttttatagataggtatagaattgatgatatttgaccccatcttaatgtttttgataaaccccattctaaattttatgctagcttttcttt |
100 |
Q |
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| T |
32824507 |
ataaaatcccttttatagatacgtatagaattgatgatatttgaccccatcttaatgtttttgataaaccccattctaaattttatgctagcttttcttt |
32824606 |
T |
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| Q |
101 |
cnnnnnnnnnnnnnnnnn-cttatgctagctttgtcactgatctcaatatcacaccaacnnnnnnnnnnnnnnnnaaggacccaacaaaaacacaaacac |
199 |
Q |
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| T |
32824607 |
caaaaaaaaaaaaaaaaaacttatgctagctttgtcactgatctcaatatcgcaccaactatatatata------aaggacccaacaaaaacacaaacac |
32824700 |
T |
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| Q |
200 |
actcgctatcatttttc----aataggggatgggaaccacaaacaaagaaactaaacctcttcttgacatgaaggtgacaatccacaaaacttcaatgat |
295 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824701 |
actcgctataatttttcgatagataggggatgggaaccacaaacaaagaaactaaacctcttcttgacatgaaggtgacaatccacaaaacttcaatgat |
32824800 |
T |
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| Q |
296 |
ttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatttctacgtaaaaacggttcat |
380 |
Q |
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| T |
32824801 |
ttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatttctacgtaaaaacggttcat |
32824885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 32808071 - 32808190
Alignment:
| Q |
261 |
gacatgaaggtgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||| ||||||||||||| ||||||| || ||||||| |
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| T |
32808071 |
gacatgaaggtgacaatccacaaaacttcaatgattttcccatcaaaacaaatcgaaaagaaatccttgttcttatcaaacatagacagagttctcaatt |
32808170 |
T |
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| Q |
361 |
tctacgtaaaaacggttcat |
380 |
Q |
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| | || |||||||||||| |
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| T |
32808171 |
ttcatgtgaaaacggttcat |
32808190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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