View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_12 (Length: 374)
Name: NF18839_low_12
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 46584499 - 46584858
Alignment:
| Q |
1 |
attgttttggaatgtgatgtaatgtaggttcttgaattggctgggaatgctgcaagagataaaaagaagaacagaattaaccctagacacgtgtgtcttg |
100 |
Q |
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| T |
46584499 |
attgttttggaatgtgatgtaatgtaggttcttgaattggctgggaatgctgcaagagataacaagaagaacagaattaaccctagacacgtgtgtcttg |
46584598 |
T |
|
| Q |
101 |
ctgtgaggaacgatgatgaattaggaaaattgctccaaggtgtgacaattgctagtggtggagttttgccaaatataaaccctgtgttgttgccaaagaa |
200 |
Q |
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| T |
46584599 |
ctgtgaggaacgatgatgaattaggaaaattgcttcaaggtgtgacaattgctagtggtggagttttgccaaatataaaccctgtgttgttgccaaagaa |
46584698 |
T |
|
| Q |
201 |
aaccgctgctgctgagaaaactaccaattcccctaagaaatagatttgtcaattgtataatcttccttactttttaattaggnnnnnnnnnaattgaagt |
300 |
Q |
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| T |
46584699 |
aaccgctgctgctgagaaaactaccaattcccctaagaaatagatttgtcaattgtataatctcccttactttttaattaggtttttttttaattgaagt |
46584798 |
T |
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| Q |
301 |
gcatttacatggcttcaactgtagatgtaattttccctcaaaactttagatgtaatttgt |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46584799 |
gcatttacatggcttcaactgtagatgtaattttccctcaaaactttagatgtaatttgt |
46584858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 26 - 264
Target Start/End: Original strand, 630437 - 630684
Alignment:
| Q |
26 |
aggttcttgaattggctgggaatgctgcaagagataaaaagaagaacagaattaaccc---tagacacgtgtgtcttgctgtgaggaacgatgatgaatt |
122 |
Q |
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| T |
630437 |
aggttcttgaattggctgggaatgttgcaagagataacaagaagaacataattaacccccctagacacgtgtgtcttgctgcgaggaacgttgatgaatt |
630536 |
T |
|
| Q |
123 |
aggaaaattgctccaaggtgtgacaattgctagtggtggagttttgccaaatataaaccctgtgttgttgccaaagaaaa------ccgctgctgctgag |
216 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||| |
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| T |
630537 |
aggaaaattgcttcaaggtgtggcaattgctagtggtggagttttgccaaatattaaccctgtgttgttgccaaagaaaaatggttctgctgctactgag |
630636 |
T |
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| Q |
217 |
aaaactaccaattcccctaagaaatagatttgtcaattgtataatctt |
264 |
Q |
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||| |||| || ||||||||||||||||||| |||||||||||||||| |
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| T |
630637 |
aaatctactaagtcccctaagaaatagatttttcaattgtataatctt |
630684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 41257789 - 41257895
Alignment:
| Q |
26 |
aggttcttgaattggctgggaatgctgcaagagataaaaagaagaacagaattaaccctagacacgtgtgtcttgctgtgaggaacgatgatgaattagg |
125 |
Q |
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|||||||||| |||||||| ||||| ||| | || || ||||||||||| || | |||||| ||||||| | ||||||||||||||||| ||| | || |
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| T |
41257789 |
aggttcttgagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccctaggcacgtgttgttggctgtgaggaacgatgaagaacttgg |
41257888 |
T |
|
| Q |
126 |
aaaattg |
132 |
Q |
| |
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||||||| |
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| T |
41257889 |
aaaattg |
41257895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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