View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18839_low_13 (Length: 356)
Name: NF18839_low_13
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_13 |
 | |
|
| [»] scaffold0085 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0085 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 45166 - 45512
Alignment:
| Q |
10 |
aagaatatcagaaacaaagtgggggcacgggcctgcacaagtgccgacatgattccgtccctgagaatgaagaatttgtgcaatttgaattggtctgcat |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45166 |
aagaaaatcagaaacaaagtgggggcacgggcctgcacaagtgccgacatgattccgtccctgagaatgaagaatttgtgcaatttgaattggtctgcat |
45265 |
T |
|
| Q |
110 |
catccaaaaaccaaattttcaagcaattctccgtgcgcaaagttttaaattgcgatcacgacataatccacgatattacagagaataattgttaaatata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45266 |
catccaaaaaccaaattttcaagcaattctccgtgcgcaaagttttaaattgcgatcacgacataatccacgatattacagagaataattgttaaatata |
45365 |
T |
|
| Q |
210 |
cttctatgcgatcataaagacatcaaaaaccttgatataacaatccaaatttcagtaaacagcctttttctataaaacccctgtcatgcttaaacaaaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45366 |
cttctatgcgatcataaagacatcaaaaaccttgatataacaatccaaatttcagtaaacagcctttttctataaaacccctgtcatgcttaaacaaaaa |
45465 |
T |
|
| Q |
310 |
ctaggtttgcttcttagtatccaaaaagttgcaaatactatttcctc |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45466 |
ctaggtttgcttcttagtatccaaaaagttgcaaatactatttcctc |
45512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University