View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_14 (Length: 348)
Name: NF18839_low_14
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 3714698 - 3714367
Alignment:
| Q |
13 |
acctgtgttattcttcatgcatgcatatcnnnnnnnatgttcattttgacttcatattgaacaatataagattttgattttattcatgaaagttctccta |
112 |
Q |
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| T |
3714698 |
acctgtgttattcttcatgcatgcatatcttttttgatgttcattttgactgcatattgaacaatataagattttgattttattcatgaaagttctccta |
3714599 |
T |
|
| Q |
113 |
ccgtctattgtgggaaccgagtcagtgtatggtgaaataaataatatattagtccttaatatactaccaagtactaactttttctggtgcattacttata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3714598 |
ccgtctattgtgggaaccgagtcagtgtatggtgaaataaataatatatcagtccttaatataccaccaagtactaactttttctggtgcattacttata |
3714499 |
T |
|
| Q |
213 |
ttgatatatatttggtaaaagctaataagttttcttaaagtgtcagtatataatttaagggatttggtttctttaacacaagtaagtcacttttaagagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3714498 |
ttgatatatatttggtaaaagctaataagttttcttaaagtgtcagtatataatttaagggatttggtttctttaacacaagtaagtcacttttaagagt |
3714399 |
T |
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| Q |
313 |
aaagtgataagtgccattgatttgatttgatt |
344 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
3714398 |
aaagtgataagtgccatcgatttgatttgatt |
3714367 |
T |
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