View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_15 (Length: 314)
Name: NF18839_low_15
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 91 - 277
Target Start/End: Original strand, 17564276 - 17564459
Alignment:
| Q |
91 |
aatagacttttaggaagcatgaagaacttgaaaagaaaatgcagaaacaacatgaggagactttgattgaacaagttaaaacaaatgagggattgttgct |
190 |
Q |
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| T |
17564276 |
aatagacttttaggaagcatgaagaacttgaaaagaaaatgcagaaacaacatgaggagactttgattgaacaagttaaaacaaatgagggattgttgct |
17564375 |
T |
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| Q |
191 |
ctattggacatgatgaagaaacaacatcaatcttaaaaccctagttattgcacacctttcatgttttatcttcttagtgtttttgat |
277 |
Q |
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| T |
17564376 |
ctattggacatgatgaagaaacaacatcaatcttaaaaccctag---ttgcacacctttcatgttttatcttcttagtgtttctgat |
17564459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 17542105 - 17542033
Alignment:
| Q |
16 |
ataggcataatgagattcaagttgagctcatcagaaagctagaagctttagagaagaagatgcaagagcaaca |
88 |
Q |
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| T |
17542105 |
ataggcataatgagattcaagttgagctcatcagaaagctagaagctttagagaagaagatgcaagagcaaca |
17542033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 13305954 - 13306146
Alignment:
| Q |
45 |
atcagaaagctagaagctttagagaagaagatgcaagagcaacatcaatagacttttaggaagcatgaagaacttgaaaagaaaatgcagaaacaacatg |
144 |
Q |
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| T |
13305954 |
atcagaaagcaagaagctttggagaaaaatatgcaggagcaacacttagagtctctaaggaagcaagaagagctagaaagaaatatgaagaagcaacatg |
13306053 |
T |
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| Q |
145 |
aggagactttgattgaacaagttaaaacaaatga-gggattgttgctctattggacatgatgaagaaacaacatcaatcttaaaaccctagtt |
236 |
Q |
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| T |
13306054 |
aggagtctttggctgagcaagcaaagacaaatgctgggattgctgctctcttggagatgatgaagaatcagcataaaccttaaatccttagtt |
13306146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 24494210 - 24494255
Alignment:
| Q |
18 |
aggcataatgagattcaagttgagctcatcagaaagctagaagctt |
63 |
Q |
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| T |
24494210 |
aggcataatgagattcaagctgagattatcagaaagcaagaagctt |
24494255 |
T |
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