View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_18 (Length: 249)
Name: NF18839_low_18
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 29979192 - 29978983
Alignment:
| Q |
18 |
gtagaaatcaagggtgatcttctcatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaaggttagatagtttaataagatcatttgagg |
117 |
Q |
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| T |
29979192 |
gtagaaatcaagggtgatcttctcatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaagattggatagtttaataagatcatttgagg |
29979093 |
T |
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| Q |
118 |
ctgaaataagtgaaagcaagatgggtggtgatgataattcaacatgcataggatcacaattgaagagcaattttgaagaagattatagtgactcatggca |
217 |
Q |
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| T |
29979092 |
ctgaaataagtgaaagcaagatgggtggtcatgataattcaacatgcataggatcacaattgaagatcaattttgaagaatattatgatgaatcatggca |
29978993 |
T |
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| Q |
218 |
cctaggacat |
227 |
Q |
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|||||||||| |
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| T |
29978992 |
cctaggacat |
29978983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 29973604 - 29973410
Alignment:
| Q |
21 |
gaaatcaagggtgatcttctcatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaaggttagatagtttaataagatcatttgaggctg |
120 |
Q |
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| T |
29973604 |
gaaatgaagggtgatcttcttatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaaggttagatagtttaataagatcttttgaggctg |
29973505 |
T |
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| Q |
121 |
aaataagtgaaagcaagatgggtggtgatgataattcaacatgcataggatcacaattgaagagcaattttgaagaagattatagtgactcatgg |
215 |
Q |
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| T |
29973504 |
aaataagtgaaagcaagatgggtggccatgataattcaacatgcataggatcacaattgaagagcaattttgaagaatattataatgaatcatgg |
29973410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 29983503 - 29983295
Alignment:
| Q |
18 |
gtagaaatcaagggtgatcttctcatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaaggttagatagtttaataagatcatttgagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29983503 |
gtagaaatcaagggtgatcttctcatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaaggttagatagtttaataagatcttttgagg |
29983404 |
T |
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| Q |
118 |
ctgaaataagtgaaagcaagatgggtggtgatgataattcaacatgcataggatcacaattgaagagcaattttgaagaagattatagtgactcatggca |
217 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| | |
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| T |
29983403 |
ctgaaataagtgaaagcaagatgtgtgaccatgataattcaacatgcataggatcacaattgaagagcaattttgaagaatactatgatgaatcatggaa |
29983304 |
T |
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| Q |
218 |
cctaggaca |
226 |
Q |
| |
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| T |
29983303 |
cataggaca |
29983295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 29993238 - 29993033
Alignment:
| Q |
21 |
gaaatcaagggtgatcttctcatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaaggttagatagtttaataagatcatttgaggctg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
29993238 |
gaaatcaagggtgatcttctcatgtcactaatggaagagttaccatgtgatgagagtaatgatgaaaggttagatagtttgataagatcttttgaggctg |
29993139 |
T |
|
| Q |
121 |
aaataagtgaaagcaagatgggtggtgatgataattcaacatgcataggatcacaattgaagagcaattttgaagaagattatagtgactcatggcacct |
220 |
Q |
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||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||| || | |
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| T |
29993138 |
aaataagtgaaagcaagattggtggccatgctaattcaacatgtttaggatcacaattgaagagcaattttgaagaatattatgatgaatcatggaacat |
29993039 |
T |
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| Q |
221 |
aggaca |
226 |
Q |
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|||||| |
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| T |
29993038 |
aggaca |
29993033 |
T |
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