View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_20 (Length: 242)
Name: NF18839_low_20
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21371484 - 21371708
Alignment:
| Q |
1 |
ttagtcccgatcatccgggacaaccttaacctcacaaagtccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371484 |
ttagtcccgatcatccgggacaaccttaacctcacaaaatccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaa |
21371583 |
T |
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| Q |
101 |
tgggtgcaatttgtgacctattaggtccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371584 |
tgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgc |
21371683 |
T |
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| Q |
201 |
tgctggttatatagcagttaggttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
21371684 |
tgctggttatatagcagttaggttt |
21371708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21386073 - 21385849
Alignment:
| Q |
1 |
ttagtcccgatcatccgggacaaccttaacctcacaaagtccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386073 |
ttagtcccgatcatccgggacaaccttaacctcacaaaatccgacgttggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaa |
21385974 |
T |
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| Q |
101 |
tgggtgcaatttgtgacctattaggtccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385973 |
tgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgc |
21385874 |
T |
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| Q |
201 |
tgctggttatatagcagttaggttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
21385873 |
tgctggttatatagcagttaggttt |
21385849 |
T |
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Back To:
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