View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_22 (Length: 207)
Name: NF18839_low_22
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 39882388 - 39882560
Alignment:
| Q |
13 |
attattctcactcattcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc |
112 |
Q |
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| T |
39882388 |
attattctcactcgttcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaagtttcccctcttactctaatctctcgtggaacacccc |
39882487 |
T |
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| Q |
113 |
taaatccacaaatttctttatacaaaaacctattaattaatagagaattaaaatgagttgccacacccacaccacac |
189 |
Q |
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| T |
39882488 |
taaatccacaaatttccttatacaaaaaact----attaatagagaattaaaatgagttgccacacccacaccacac |
39882560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 11037171 - 11037028
Alignment:
| Q |
43 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
141 |
Q |
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|||| |||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
11037171 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcgtggaccaccccctaaatcctcaaatttctttatacaaaaac |
11037072 |
T |
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| Q |
142 |
ctattaattaatagagaattaaaatgagttgccacacccacaccacac |
189 |
Q |
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| T |
11037071 |
ctattaaa----agagaatgaaaatgagttgccacacccacaccacac |
11037028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 13164193 - 13164053
Alignment:
| Q |
43 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
141 |
Q |
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|||| |||||||||| |||||||| |||||| ||||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||||||||||| |
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| T |
13164193 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcatgaaacaccccctaaatcctcaaatttctttatacaaaaac |
13164094 |
T |
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| Q |
142 |
ctattaattaatagagaattaaaatgagttgccacacccacacca |
186 |
Q |
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||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
13164093 |
ctattaaa----agataatgaaaatgagttgccacacccacacca |
13164053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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