View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18839_low_3 (Length: 597)
Name: NF18839_low_3
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_3 |
 | |
|
| [»] scaffold0289 (5 HSPs) |
| | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 16025564 - 16025003
Alignment:
| Q |
18 |
tcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacaatgatgttccctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16025564 |
tcatcaaaatcttctgtggcttccaaaatgttctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacactgatgttccctc |
16025465 |
T |
|
| Q |
118 |
caacctgattttcattggtggttgatctttggaagagatgatgtgagaatttgaagcaaaataaggctagaactagagttccaacagctacaaagggtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16025464 |
caacctgattttcattggtggttgatctttggaagagatgatgtgagaatttgaagcaaaataaggctagaactagagttccaacagctacaaagggtaa |
16025365 |
T |
|
| Q |
218 |
aactatcaataagactttcatcgtatgatgatgatgagattccatgcttgatgttgggcagtgctctaagccagagacattaccacacaagcctttatta |
317 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16025364 |
aactatcaataagactttcttcgaatgatgatgatgagattcaatgcttgatgttgggcagggctctaagccagagacattaccacacaagcctttatta |
16025265 |
T |
|
| Q |
318 |
tttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatgatatatcaacagacgttaagctgaaca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16025264 |
tttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatgatatatcaacagacgttaagctgaaca |
16025165 |
T |
|
| Q |
418 |
tctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttcc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16025164 |
tctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttcc |
16025065 |
T |
|
| Q |
518 |
atccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaatag |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16025064 |
atccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaatag |
16025003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 14606387 - 14605826
Alignment:
| Q |
18 |
tcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacaatgatgttccctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14606387 |
tcatcaaaatcttctgtggcttccaaaatgttctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacactgatgttccctc |
14606288 |
T |
|
| Q |
118 |
caacctgattttcattggtggttgatctttggaagagatgatgtgagaatttgaagcaaaataaggctagaactagagttccaacagctacaaagggtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14606287 |
caacctgattttcattggtggttgatctttggaagagatgatgtgagaatttgaagcaaaataaggctagaactagagttccaacagctacaaagggtaa |
14606188 |
T |
|
| Q |
218 |
aactatcaataagactttcatcgtatgatgatgatgagattccatgcttgatgttgggcagtgctctaagccagagacattaccacacaagcctttatta |
317 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14606187 |
aactatcaataagactttcttcgaatgatgatgatgagattcaatgcttgatattaggcagggctctaagccagagacattaccacacaagcctttatta |
14606088 |
T |
|
| Q |
318 |
tttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatgatatatcaacagacgttaagctgaaca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14606087 |
tttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatgatatatcaacagatgttaagctgaaca |
14605988 |
T |
|
| Q |
418 |
tctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttcc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14605987 |
tctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttcc |
14605888 |
T |
|
| Q |
518 |
atccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaatag |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14605887 |
atccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaatag |
14605826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 16103372 - 16102810
Alignment:
| Q |
18 |
tcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacaatgatgttccctc |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||| ||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
|
|
| T |
16103372 |
tcatcaaaatcttctgtggcttccacaatgttttcaaacacaatttttccatcaaagttccatattgtaaatacattttctggtacaatgatgttctctc |
16103273 |
T |
|
| Q |
118 |
caacctgattttcattggtggttgatctttggaagagatgatgtgagaatttgaagcaaaataaggctagaactagagttccaacagctacaaagggtaa |
217 |
Q |
| |
|
|| |||| ||||| |||||| ||||| |||||||||||| || |||| ||||||| |||||||| || | ||||||||||||||||| || ||| || |
|
|
| T |
16103272 |
cagcctggttttcgttggtgtttgatgtttggaagagattatatgagtatttgaaacaaaataatattaacattagagttccaacagctataaggggcaa |
16103173 |
T |
|
| Q |
218 |
aactatcaataagactttcatcgt---atgatgatgatgagattccatgcttgatgttgggcagtgctctaagccagagacattaccacacaagccttta |
314 |
Q |
| |
|
|||||||||||||| ||| | || |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16103172 |
aactatcaataagattttgttagtatgatgatgatgatgagattcaatgcttgatgtcgggcagggctctaagccagagacattaccacacaagtcttta |
16103073 |
T |
|
| Q |
315 |
ttatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatgatatatcaacagacgttaagctga |
414 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| | |
|
|
| T |
16103072 |
ttatttctcaacacttcgattgtagcgtttctgaaagctcgaatgttggggagtggaccctccaattggttatatgatatatcaacagatgtcaagctta |
16102973 |
T |
|
| Q |
415 |
acatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgt |
514 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16102972 |
acatttgatcaaagctagagggaataaagccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgt |
16102873 |
T |
|
| Q |
515 |
tcca-tccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaa |
576 |
Q |
| |
|
|||| | |||||||||||||| ||||| ||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
16102872 |
tccatttaaaaaaatttccactcagatcaaggctttgaaggattttaaattgtcccaattcaa |
16102810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 16173040 - 16172488
Alignment:
| Q |
18 |
tcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacaatgatgttccctc |
117 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| || | | ||||||||| || ||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
16173040 |
tcatcaaaatcttgtgtggcttccaagatgttctcgtagaccatttttccatcgaaattccatattgtaaaaacattttgaggtacaataatgttccctc |
16172941 |
T |
|
| Q |
118 |
caacctgattttcattggtggttgatctttggaagagatgatgtgagaatttgaagcaaaataaggctagaactagagttccaacagctacaaagggtaa |
217 |
Q |
| |
|
| ||||| ||||| |||||||| | ||| ||||||||| | |||||||||| ||| | ||||| | ||||||||| | ||||| ||||| |
|
|
| T |
16172940 |
ctacctggttttctcctatggttgatgtatggtagagatgatataagaatttgaaacaagtt---gctagcattagagttcctag---tacaagaggtaa |
16172847 |
T |
|
| Q |
218 |
aactatcaataagactttcatcgtatgatgatgatgagattccatgcttgatgttgggcagtgctctaagccagagacattaccacacaagcctttatta |
317 |
Q |
| |
|
||||||||||| ||||| | | | | ||| | | |||| | || | |||| ||| |||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
16172846 |
aactatcaatagtacttttttaatcttacgatcaggcgatttacttctcggtgttaagcaaggctccaagccagagatattaccacacaagccattatta |
16172747 |
T |
|
| Q |
318 |
tttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatgatatatcaacagacgttaagctgaaca |
417 |
Q |
| |
|
||||||| ||||||||| |||||| | ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16172746 |
tttctcaacacttcaatggtagcgctactgaaagctcggatgttggggagtggaccttccaattggttatatgatatatcaacagacgttaaactgaaca |
16172647 |
T |
|
| Q |
418 |
tctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttcc |
517 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16172646 |
tctgatcgaagctagagggaataaatccagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttcc |
16172547 |
T |
|
| Q |
518 |
atccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaa |
576 |
Q |
| |
|
|| |||||||||||||| ||||| ||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
16172546 |
atttaaaaaatttccactcagatcaaggctttgaaggattttaaattgtcccaattcaa |
16172488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 288 - 571
Target Start/End: Original strand, 15670573 - 15670856
Alignment:
| Q |
288 |
ccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttat |
387 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||||||| |||||||||||||||||| |||| ||||| || || || |||||||||||||||||||||| |
|
|
| T |
15670573 |
ccagaaacattaccgcacaagcctatattatttctcaacacttcaattgtagcgttattgaatgctcgcatgtttggaagtggaccctccaattggttat |
15670672 |
T |
|
| Q |
388 |
atgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtattt |
487 |
Q |
| |
|
|||| ||||||||| | | || || | ||||||||| ||| ||| || || ||| ||||||| |||||||| |||||||||||||| ||| ||| |
|
|
| T |
15670673 |
atgaaatatcaacaaaggacaaactaatcatctgatcaaaggaagaagggatctgtccaaaaagattgttatgtgaaatattcaatgtttctaagcgttt |
15670772 |
T |
|
| Q |
488 |
caactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaa |
571 |
Q |
| |
|
|| | | |||||||| |||||| | ||||| ||||| ||||||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
15670773 |
caggtttccaagcattggtggtatagctccattcaaaacatttccactgagatcaagactttcaaggactttaaattgtccaaa |
15670856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 288 - 576
Target Start/End: Original strand, 15676975 - 15677263
Alignment:
| Q |
288 |
ccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttat |
387 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||||||| |||||||||||||||||| |||| ||||| || || || |||||||||||||||||||||| |
|
|
| T |
15676975 |
ccagaaacattaccgcacaagcctatattatttctcaacacttcaattgtagcgttattgaatgctcgcatgtttggaagtggaccctccaattggttat |
15677074 |
T |
|
| Q |
388 |
atgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtattt |
487 |
Q |
| |
|
|||| ||||||||| | | || || | ||||||||| ||| ||| || || | ||| ||||| | |||||||| |||||||||||||| ||| ||| |
|
|
| T |
15677075 |
atgaaatatcaacaaaggacaaactaatcatctgatcaaaggaagaagggatcagtccaaaaagaatgttatgtgaaatattcaatgtttctaagcgttt |
15677174 |
T |
|
| Q |
488 |
caactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaa |
576 |
Q |
| |
|
|| | | |||||||| |||||| | ||| | ||||| ||||||||||||||| || |||||||||| |||||||||||||| |||| |
|
|
| T |
15677175 |
caggtttccaagcattggtggtatggctcctttcaaaacatttccactgagatcaagactttcaaggactttaaattgtccaaactcaa |
15677263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 285 - 575
Target Start/End: Original strand, 15665138 - 15665428
Alignment:
| Q |
285 |
aagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggt |
384 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||| |||||||| ||||||| |||| ||||| || || || ||||||||||| ||||||| |
|
|
| T |
15665138 |
aagccagatacattaccgcacaagcctgtattatttctcaaaacttcaatggtagcgtcattgaatgctcgcatgtttggaagtggaccctcgaattggt |
15665237 |
T |
|
| Q |
385 |
tatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagta |
484 |
Q |
| |
|
||||||||||||||||| | || || | ||||||||| ||| ||| || ||| ||||||||||| |||||||| ||||||| |||||| ||| |
|
|
| T |
15665238 |
tatatgatatatcaacatttgacaaactaatcatctgatcaaaggaagaagggatattgccagaaagattgttatgtgaaatattcagtgtttctaagag |
15665337 |
T |
|
| Q |
485 |
tttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattca |
575 |
Q |
| |
|
| ||| || | || | ||| |||||| ||||||||||||||||||||||||||||| || ||| |||| | ||||||| |||||||||| |
|
|
| T |
15665338 |
tatcagctttacaaacgttggtggtatggttccatccaaaaaatttccactgagatcaagactttgaagggctttaaattttccaaattca |
15665428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 288 - 576
Target Start/End: Complemental strand, 17848750 - 17848462
Alignment:
| Q |
288 |
ccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttat |
387 |
Q |
| |
|
||||| ||||||||||||| | | |||||||||||| |||||||| || || || |||||||| |||| || || | |||||||| ||||||||| |
|
|
| T |
17848750 |
ccagaaacattaccacacagtcttgtattatttctcaaaacttcaatggttgctttattgaaagctggaatgtttggaaccggaccctctaattggttaa |
17848651 |
T |
|
| Q |
388 |
atgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtattt |
487 |
Q |
| |
|
| ||||| ||||| || || || | ||| ||||| ||| | ||||||||||| |||||||| ||||||||||| |||||||||| ||| |||||| | |
|
|
| T |
17848650 |
acgatatgtcaaccgataacaaactcagcatatgatcaaagttcgagggaataaatccagaaaggttattatgtgatatattcaatgattctaagtatat |
17848551 |
T |
|
| Q |
488 |
caactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaa |
576 |
Q |
| |
|
|| || | |||| |||| ||||||||||| | | |||||| ||||| ||||| || ||| |||||| |||||||| ||||| |||| |
|
|
| T |
17848550 |
cagttgagcaagcgttgacggtattgttccgttgagaaaattcccactaagatcaagactttgaaggactttaaattggccaaactcaa |
17848462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 263 - 474
Target Start/End: Original strand, 17825963 - 17826172
Alignment:
| Q |
263 |
gcttgatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattg |
362 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||| | |||||||||||||| ||||||| ||||| || ||||||| |||| || |
|
|
| T |
17825963 |
gcttgatgttgggcaaggctccaagccagagacattgccacagt--cttttattatttctcaaaacttcaaaagtagctttatggaaagctggaatgttt |
17826060 |
T |
|
| Q |
363 |
gggagtggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtg |
462 |
Q |
| |
|
|| | || |||||| || |||||| ||||||| ||||||| ||||||| ||||||||| ||| | || |||||||| |||||||| |||||||||| |
|
|
| T |
17826061 |
ggaactgaaccctcaaactggttaaatgatatgtcaacagttaacaagctgagcatctgatcaaagtttgacggaataaatccagaaaggttattatgtg |
17826160 |
T |
|
| Q |
463 |
agatattcaatg |
474 |
Q |
| |
|
| |||||||||| |
|
|
| T |
17826161 |
atatattcaatg |
17826172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 17849012 - 17848932
Alignment:
| Q |
17 |
atcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttg |
97 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||| | |||||||||||| ||||||| |||| || |||||| |
|
|
| T |
17849012 |
atcatcaaaatcttctgtggcttcaataatactctcatacaccatttttccatcaaaactccatatggtaaatagattttg |
17848932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 15664871 - 15664977
Alignment:
| Q |
18 |
tcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacaatgatgttccctc |
117 |
Q |
| |
|
|||||||| ||||| || ||||| | ||| |||||||||| | ||| |||||||| |||||||||||| |||||||| || ||||| |||| |||| |
|
|
| T |
15664871 |
tcatcaaactcttccgttgcttcaataatgttctcatacaccattttcccatcaaaactccatattgtaaatacatttttaggagcaatgttgtttcctc |
15664970 |
T |
|
| Q |
118 |
caacctg |
124 |
Q |
| |
|
||||||| |
|
|
| T |
15664971 |
caacctg |
15664977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 285 - 575
Target Start/End: Original strand, 18006 - 18296
Alignment:
| Q |
285 |
aagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggt |
384 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||| |||||||| ||||||| |||| ||||| || || || ||||||||||| ||||||| |
|
|
| T |
18006 |
aagccagatacattaccgcacaagcctgtattatttctcaaaacttcaatggtagcgtcattgaatgctcgcatgtttggaagtggaccctcgaattggt |
18105 |
T |
|
| Q |
385 |
tatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagta |
484 |
Q |
| |
|
||||||||||||||||| | || || | ||||||||| ||| ||| || ||| ||||||||||| |||||||| ||||||| |||||| ||| |
|
|
| T |
18106 |
tatatgatatatcaacatttgacaaactaatcatctgatcaaaggaagaagggatattgccagaaagattgttatgtgaaatattcagtgtttctaagag |
18205 |
T |
|
| Q |
485 |
tttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattca |
575 |
Q |
| |
|
| ||| || | || | ||| |||||| ||||||||||||||||||||||||||||| || ||| |||| | ||||||| |||||||||| |
|
|
| T |
18206 |
tatcagctttacaaacgttggtggtatggttccatccaaaaaatttccactgagatcaagactttgaagggctttaaattttccaaattca |
18296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 5464 - 5521
Alignment:
| Q |
285 |
aagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgt |
342 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
5464 |
aagccagaaacattaccacacaagcctgtattatttctcaacacttcaatggtagcgt |
5521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 14297 - 14354
Alignment:
| Q |
285 |
aagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgt |
342 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
14297 |
aagccagaaacattaccacacaagcctgtattatttctcaacacttcaatggtagcgt |
14354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 5197 - 5303
Alignment:
| Q |
18 |
tcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacaatgatgttccctc |
117 |
Q |
| |
|
|||||||| |||||||||||||| | ||| |||||||||| | ||| |||||||| ||||||| |||| |||||||| || |||||||||| |||| |
|
|
| T |
5197 |
tcatcaaactcttctgtggcttcaataatgttctcatacaccattttcccatcaaaactccatatagtaaatacatttttaggagcaatgatgtttcctc |
5296 |
T |
|
| Q |
118 |
caacctg |
124 |
Q |
| |
|
||||||| |
|
|
| T |
5297 |
caacctg |
5303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 14030 - 14136
Alignment:
| Q |
18 |
tcatcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacattttgtggtacaatgatgttccctc |
117 |
Q |
| |
|
|||||||| |||||||||||||| | ||| |||||||||| | ||| |||||||| ||||||| |||| |||||||| || |||||||||| |||| |
|
|
| T |
14030 |
tcatcaaactcttctgtggcttcaataatgttctcatacaccattttcccatcaaaactccatatagtaaatacatttttaggagcaatgatgtttcctc |
14129 |
T |
|
| Q |
118 |
caacctg |
124 |
Q |
| |
|
||||||| |
|
|
| T |
14130 |
caacctg |
14136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 267 - 541
Target Start/End: Complemental strand, 15032698 - 15032424
Alignment:
| Q |
267 |
gatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattgggga |
366 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||| |||||||| |||||| ||| ||||||||| ||| || |||||||| ||| || || | |
|
|
| T |
15032698 |
gatgttgagcaaggctctaggccagagacattaccacataagcctttgttatttgtcaatgcttcaattggagcttttttgaaagctgtaatgtttggaa |
15032599 |
T |
|
| Q |
367 |
gtggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagat |
466 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||| || ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| |
|
|
| T |
15032598 |
ttggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagag |
15032499 |
T |
|
| Q |
467 |
attcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatc |
541 |
Q |
| |
|
|||||||||||| ||| || ||||| ||||||||||||||| ||||||| || |||||| ||||| ||||| |
|
|
| T |
15032498 |
attcaatgtttctaagcgatttaactgcccaagcattgatggtatggttccattcataaaattcccactaagatc |
15032424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 576
Target Start/End: Complemental strand, 15011240 - 15010931
Alignment:
| Q |
267 |
gatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattgggga |
366 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||| |||||||| |||||| ||| ||||||||| ||| | |||||||| || ||| || | |
|
|
| T |
15011240 |
gatgttgagcaaggctctaggccagagacattaccacataagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaacatttggaa |
15011141 |
T |
|
| Q |
367 |
gtggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagat |
466 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| || ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| |
|
|
| T |
15011140 |
tcggaccctccaattggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagag |
15011041 |
T |
|
| Q |
467 |
attcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgt |
566 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||| |||||| ||||||| || | |||| ||||| ||||| || |||||| ||||| ||||| |
|
|
| T |
15011040 |
attcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattgg |
15010941 |
T |
|
| Q |
567 |
ccaaattcaa |
576 |
Q |
| |
|
||||| |||| |
|
|
| T |
15010940 |
ccaaactcaa |
15010931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 267 - 576
Target Start/End: Complemental strand, 15037260 - 15036951
Alignment:
| Q |
267 |
gatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattgggga |
366 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||| |||||||| |||||| ||| ||||||||| ||| | |||||||| ||| || || | |
|
|
| T |
15037260 |
gatgttgagcaaggctctaggccagagacattaccacataagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaatgtttggaa |
15037161 |
T |
|
| Q |
367 |
gtggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagat |
466 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||| || ||||| ||||| | | | ||||| ||||||| |||||| ||||| |||||||||| |
|
|
| T |
15037160 |
tcggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttaagggaatggtaccagagagattgttatgtgagag |
15037061 |
T |
|
| Q |
467 |
attcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgt |
566 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||| |||||| ||||||| || | |||| ||||| ||||| ||| |||||| ||||| ||||| |
|
|
| T |
15037060 |
attcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaattgg |
15036961 |
T |
|
| Q |
567 |
ccaaattcaa |
576 |
Q |
| |
|
||||| |||| |
|
|
| T |
15036960 |
ccaaactcaa |
15036951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 576
Target Start/End: Complemental strand, 15002347 - 15002038
Alignment:
| Q |
267 |
gatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattgggga |
366 |
Q |
| |
|
||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||||| ||||||||| ||| | ||||||| ||| || || | |
|
|
| T |
15002347 |
gatgttgagcaaggctctaggccagaaacattaccacacaagcctttgttatttctcagtgcttcaattggagctctttcgaaagctgtaatgtttgg-a |
15002249 |
T |
|
| Q |
367 |
gt-ggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgaga |
465 |
Q |
| |
|
|| ||||||||||| ||||| || ||||||||||||| || ||||| ||||| | | | ||||| ||||||| |||||| ||||| |||||||||| |
|
|
| T |
15002248 |
gtcggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagctttagggaatggtaccagagagattgttatgtgaga |
15002149 |
T |
|
| Q |
466 |
tattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattg |
565 |
Q |
| |
|
|||||||||||| |||| || ||||| |||||||| |||||| ||||||| || | |||| ||||| ||||| ||| |||||| ||||| ||||| |
|
|
| T |
15002148 |
gattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaattg |
15002049 |
T |
|
| Q |
566 |
tccaaattcaa |
576 |
Q |
| |
|
||||| |||| |
|
|
| T |
15002048 |
gccaaactcaa |
15002038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 287 - 518
Target Start/End: Original strand, 14532637 - 14532868
Alignment:
| Q |
287 |
gccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggtta |
386 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | ||||||||| ||| || ||| ||| ||| | || | |||||||||||||||||| |
|
|
| T |
14532637 |
gccagagacattaccacacaagcctttgttatttctaagtgcttcaattggagctttttggaaggctgtaatgcttggaattggaccctccaattggttg |
14532736 |
T |
|
| Q |
387 |
tatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatt |
486 |
Q |
| |
|
||||||||||||||| || ||||| ||||||| | || |||| | ||||| |||||||||||||||||||| | ||||||||||| |||| | |
|
|
| T |
14532737 |
tatgatatatcaacaattgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaagattcaatgtttgtaagtgat |
14532836 |
T |
|
| Q |
487 |
tcaactgtgtaagcattgatggtattgttcca |
518 |
Q |
| |
|
| |||||| ||||||||||||||| |||||| |
|
|
| T |
14532837 |
ttaactgtccaagcattgatggtatggttcca |
14532868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 576
Target Start/End: Complemental strand, 15017342 - 15017046
Alignment:
| Q |
280 |
gctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagt-ggaccctcca |
378 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| || |||||| ||| ||||||||| ||| | | ||||||| ||| || || ||| |||||||||| |
|
|
| T |
15017342 |
gctctaggccagagatattaccacacaagcccttgttatttgtcaatgcttcaattggagctcttccgaaagctgtaatgtttgg-agtcggaccctcca |
15017244 |
T |
|
| Q |
379 |
attggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttc |
478 |
Q |
| |
|
| ||||| || |||| |||||||| || ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
15017243 |
actggttgtaagatacatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttc |
15017144 |
T |
|
| Q |
479 |
caagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaattcaa |
576 |
Q |
| |
|
|||| || ||||| |||||||| |||||| ||||||| || | |||| ||||| ||||| || |||||| ||||| ||||| ||||| |||| |
|
|
| T |
15017143 |
taagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaactcaa |
15017046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 14522256 - 14522331
Alignment:
| Q |
21 |
tcaaaatcttctgtggcttccaaaatattctcatacaaaaattttccatcaaagttccatattgtaagtacatttt |
96 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| | ||||||||||||| |||||||||||| || ||||| |
|
|
| T |
14522256 |
tcaaaatcttctgtggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
14522331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 529
Target Start/End: Original strand, 14522495 - 14522758
Alignment:
| Q |
266 |
tgatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattgggg |
365 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||| ||||||||||| |||||||| | |||||| || ||| | ||| ||| ||| || || |
|
|
| T |
14522495 |
tgatgttgagcaaggctctaggccagagacattaccgcacaagcctttgttatttctaaatgcttcaactggagctctttggaatgctgtaatgtttgga |
14522594 |
T |
|
| Q |
366 |
agtggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgaga |
465 |
Q |
| |
|
| |||||||||||| |||| || ||||||||||||| || || || ||||| | | ||||| ||||||| |||| | |||||||||||||||| |
|
|
| T |
14522595 |
attggaccctccaaccggttgtaagatatatcaacagttgtcaaacttaacatatcaaaaaagcttaagggaatgttaccatagagattattatgtgaga |
14522694 |
T |
|
| Q |
466 |
tattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatt |
529 |
Q |
| |
|
|||||||||||| ||| || |||||| |||||||| |||||| ||||||| ||||||||| |
|
|
| T |
14522695 |
gattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaaaaatt |
14522758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 541
Target Start/End: Complemental strand, 15025234 - 15025083
Alignment:
| Q |
390 |
gatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttca |
489 |
Q |
| |
|
||||||||||||| || ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| |||||||||||| ||| || | |
|
|
| T |
15025234 |
gatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagcgattta |
15025135 |
T |
|
| Q |
490 |
actgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatc |
541 |
Q |
| |
|
|||| ||||||||||||||| ||||||| || |||||| ||||| ||||| |
|
|
| T |
15025134 |
actgcccaagcattgatggtatggttccattcataaaattcccactaagatc |
15025083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 15040984 - 15040929
Alignment:
| Q |
267 |
gatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttct |
322 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15040984 |
gatgttgagcaatgctctaggccagagacattaccacacaagcctttgttatttct |
15040929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 571
Target Start/End: Complemental strand, 14467867 - 14467739
Alignment:
| Q |
443 |
accagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatct |
542 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| || |||||| || ||||| ||| || ||||| | ||||||||| |||| ||||| |
|
|
| T |
14467867 |
accagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaaaaattctcactaagatca |
14467768 |
T |
|
| Q |
543 |
aggatttcaaggacattaaattgtccaaa |
571 |
Q |
| |
|
|| |||||| ||||| ||||| ||||| |
|
|
| T |
14467767 |
agatcttcaagaacatttaattggccaaa |
14467739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 571
Target Start/End: Complemental strand, 14482049 - 14481921
Alignment:
| Q |
443 |
accagaaagattattatgtgagatattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatct |
542 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||| || |||||| || ||||| ||| || ||||| | ||||||||| |||| ||||| |
|
|
| T |
14482049 |
accagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaacattgctggaatggttccgttcaaaaaattctcactaagatca |
14481950 |
T |
|
| Q |
543 |
aggatttcaaggacattaaattgtccaaa |
571 |
Q |
| |
|
|| |||||| ||||| ||||| ||||| |
|
|
| T |
14481949 |
agatcttcaagaacatttaattggccaaa |
14481921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 266 - 535
Target Start/End: Complemental strand, 13020 - 12751
Alignment:
| Q |
266 |
tgatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattgggg |
365 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||| || ||| ||| |||| || || |
|
|
| T |
13020 |
tgatgttgagcaaggctctagaccagagacattaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttagga |
12921 |
T |
|
| Q |
366 |
agtggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgaga |
465 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| || ||||| ||||||| | || |||| | ||||| |||||||||||||||||||| | |
|
|
| T |
12920 |
atcggaccctccaattggttgtatgatatatcaacaattgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaa |
12821 |
T |
|
| Q |
466 |
tattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccact |
535 |
Q |
| |
|
||||||||||| | || || |||||| ||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
12820 |
gattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccact |
12751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 525
Target Start/End: Complemental strand, 6715 - 6473
Alignment:
| Q |
280 |
gctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaa |
379 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| | ||||||||| ||| || |||| ||| |||| || || | |||||| || || |
|
|
| T |
6715 |
gctctaagccagag---ttaccacacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaa |
6619 |
T |
|
| Q |
380 |
ttggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttcc |
479 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| |||||| | | || | ||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
6618 |
ttggttgtatgatatatcaatagttgttaagcttgacatctcaccataggtcaagggaatggtaccagaaaaattattatgtgagagattcaatgtttct |
6519 |
T |
|
| Q |
480 |
aagtatttcaactgtgtaagcattgatggtattgttccatccaaaa |
525 |
Q |
| |
|
||| || |||| | |||||||| |||||| ||||||| ||||| |
|
|
| T |
6518 |
aagcgatttaactctccaagcattgttggtatggttccattcaaaa |
6473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 266 - 535
Target Start/End: Complemental strand, 13663 - 13394
Alignment:
| Q |
266 |
tgatgttgggcagtgctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattgggg |
365 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||| || ||| ||| |||| || || |
|
|
| T |
13663 |
tgatgttgagcaaggctctagaccagagacattaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttagga |
13564 |
T |
|
| Q |
366 |
agtggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgaga |
465 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| || ||||| ||||||| | || |||| | ||||| |||||||||||||||||||| | |
|
|
| T |
13563 |
atcggaccctccaattggttgtatgatatatcaacaattgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaa |
13464 |
T |
|
| Q |
466 |
tattcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccact |
535 |
Q |
| |
|
||||||||||| | || || |||||| ||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
13463 |
gattcaatgtttgtatgtgatttaactgtccaagcattgatggtatggttccgttcaaaaaatttccact |
13394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 525
Target Start/End: Complemental strand, 7359 - 7117
Alignment:
| Q |
280 |
gctctaagccagagacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaa |
379 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| | ||||||||| ||| || |||| ||| |||| || || | |||||| || || |
|
|
| T |
7359 |
gctctaagccagag---ttaccacacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaa |
7263 |
T |
|
| Q |
380 |
ttggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttcc |
479 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| |||||| | | || | ||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
7262 |
ttggttgtatgatatatcaatagttgttaagcttgacatctcaccataggtcaagggaatggtaccagaaaaattattatgtgagagattcaatgtttct |
7163 |
T |
|
| Q |
480 |
aagtatttcaactgtgtaagcattgatggtattgttccatccaaaa |
525 |
Q |
| |
|
||| || |||| | |||||||| |||||| ||||||| ||||| |
|
|
| T |
7162 |
aagcgatttaactctccaagcattgttggtatggttccattcaaaa |
7117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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