View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_6 (Length: 472)
Name: NF18839_low_6
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 1803310 - 1803758
Alignment:
| Q |
8 |
cttataaattaaatgtctttaagatttttggttaagatgtgttgtcaaactctctcgttttattattcttgatctaatatagtagatgaacccccgtgct |
107 |
Q |
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| T |
1803310 |
cttataaattaaatgtctttaaagtttttggttaagatgtgttgtcaaactctctcgttttattattcttgatctaatatagtagatgaacccctatact |
1803409 |
T |
|
| Q |
108 |
ttcttcatgacccaacaggcgaccgactccttgtgtcagaagtctttctatcaatggtttcatgcgacatatagctcctacgtgagggagagcataacaa |
207 |
Q |
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|| |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1803410 |
tttttcatgacccaacatgtgaccgactccttgtgtcagaagtctttttatcaatggtttcatgcgacatatccctcctacgtgagggagagcataacaa |
1803509 |
T |
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| Q |
208 |
aataattgacggacgcacactacaagatattattgttgtagtaaatgcgacttagaagtagcaaatatataagtgggaagaattgattaaaatggaaatt |
307 |
Q |
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| T |
1803510 |
aataattgacggacgcacactacaagatattattgttgtagtaaatgcgacttagaagtagcaaatatataagtgggaagaattgattaaaatggatatt |
1803609 |
T |
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| Q |
308 |
ttgaaggttgagagattgattttatagacatccaagtttctttgatggagatgaat--gcacaatcaacaacaattatccgtttctcaagtggcatattg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1803610 |
ttgaaggttgagagattgattttatagacatccaagtttctttgatggagatgaatgcgcacaatcaacaacaattatccgtttctcaagtggcatattg |
1803709 |
T |
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| Q |
406 |
tcgaaaattggtcacatcaacgtgtctttgatgagtcaatgtgtcttaa |
454 |
Q |
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| T |
1803710 |
tcgaaaattggtcacatcaacgtgtctttgatgagtcaatgtgtcttaa |
1803758 |
T |
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