View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18839_low_7 (Length: 462)
Name: NF18839_low_7
Description: NF18839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18839_low_7 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 23942 - 24374
Alignment:
| Q |
14 |
atcaaatgtgataaaaatgatgtggatttcatcattagagattttgaaaagcttatcgtagatggaagaaggtatgttcgttgtgctcccagtgataagt |
113 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23942 |
atcaaatgtgataaaaatgaagtggatttcatcattagagattttgaaaaactaatcgtagatggaagaaggtatgttcgttgtgctcccagtgataagt |
24041 |
T |
|
| Q |
114 |
atttggacaacattcttataactgggcttgacaaagaggttcctgagactgaaattttggatgtactaagatctgctactagtagaaggattctagattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24042 |
atttggacaacattcttataactgggcttgacaaagaggttcctgagactaaaattttggatatactaagatctgctactagtagaaggattctagattt |
24141 |
T |
|
| Q |
214 |
tttctttaagagaggagatgctgttgaaaatccaccatgcagtgtgattgcagagacaatattaaaagaaatctcccccttaatgccc-nnnnnnnncct |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24142 |
tttctttaagagaggagaagctgttgaaaatccaccatgcagtatgattgcagagacaatattaaaagaaatctcccccttaatgcccaaaaaaaaacct |
24241 |
T |
|
| Q |
313 |
cacattagttcttgccgtgttcaggtgtttccacctaagccgaaggattattcgatgaatgctttaattcattttgatggaagattacatttagaagcag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24242 |
cacattagttcttgccgtgttcaggtgtttccacctaagccgaaggattattcgatgaatgctttaattcattttgatggaagattacatttagaagcag |
24341 |
T |
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| Q |
413 |
caaaagctttggagaaaattgatggaaaggtgt |
445 |
Q |
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| T |
24342 |
caaaagctttggagaaaattgatggaaaggtgt |
24374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 3880030 - 3880462
Alignment:
| Q |
14 |
atcaaatgtgataaaaatgatgtggatttcatcattagagattttgaaaagcttatcgtagatggaagaaggtatgttcgttgtgctcccagtgataagt |
113 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3880030 |
atcaaatgtgataaaaatgacgtggatttcatcattagagattttgaaaacctcatcgtagatggaagaaggtatgttcgttgtgctcccagtgataagt |
3880129 |
T |
|
| Q |
114 |
atttggacaacattcttataactgggcttgacaaagaggttcctgagactgaaattttggatgtactaagatctgctactagtagaaggattctagattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3880130 |
atttggacaacattcttataactgggcttgacaaagaggttcctgagactaaaattttggatatactaagatctgctactagtagaaggattctagattt |
3880229 |
T |
|
| Q |
214 |
tttctttaagagaggagatgctgttgaaaatccaccatgcagtgtgattgcagagacaatattaaaagaaatctcccccttaatgccc-nnnnnnnncct |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3880230 |
tttctttaagagaggagacgctgttgaaaatccaccatgcagtatgattgcagagacaatattaaaagaaatctcccccttaatgcccaaaaaaaaacct |
3880329 |
T |
|
| Q |
313 |
cacattagttcttgccgtgttcaggtgtttccacctaagccgaaggattattcgatgaatgctttaattcattttgatggaagattacatttagaagcag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3880330 |
cacattagttcttgccgtgttcaggtgtttccacctaagccgaaggattattcgatgaatgctttaattcattttgatggaagattacatttagaagcag |
3880429 |
T |
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| Q |
413 |
caaaagctttggagaaaattgatggaaaggtgt |
445 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
3880430 |
caaaagctttggagaaaattgatggaaaggtgt |
3880462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 39319636 - 39319210
Alignment:
| Q |
17 |
aaatgtgataaaaatgatgtggatttcatcattagagattttgaaaagcttatcgtagatggaagaaggtatgttcgttgtgctcccagtgataagtatt |
116 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||| | || ||| | | ||| | |||||||| || |||| | |||| |||||| |
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| T |
39319636 |
aaatgtgataaaaatgatgttgatttcatcttgagagatttttataacctt---gcaatcggagggaggtatgtccgcagtgcactcagtaataagtcca |
39319540 |
T |
|
| Q |
117 |
tggacaacattcttataactgggcttgacaaagaggttcctgagactgaaattttggatgtactaagatctgctactagtagaaggattctagatttttt |
216 |
Q |
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|||||| ||| | |||| ||||||||||||||| ||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
39319539 |
tggacagtattgtgataagtgggcttgacaaagaacttctagaaactgaaattttggatgtactaagaactgctacaagtagaaggattctagacttttt |
39319440 |
T |
|
| Q |
217 |
ctttaagagaggagatgctgttgaaaatccaccatgcagtgtgattgcagagacaatattaaaagaaatctcccccttaatgccc-nnnnnnnncctcac |
315 |
Q |
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||| ||| ||||||||||||| |||||| ||||||||| | |||| | | || |||||||| ||||||||||| ||| |||||| |
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| T |
39319439 |
cttggtgaggggagatgctgttggaaatccgtcatgcagtgcttgcgaagagtcgctctttaaagaaatttcccccttaattcccaaaataaaccctcac |
39319340 |
T |
|
| Q |
316 |
attagttcttgccgtgttcaggtgtttccacctaagccgaaggattattcgatgaatgctttaattcattttgatggaagattacatttagaagcagcaa |
415 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||||| |||| || |||| ||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
39319339 |
attagttcttgccgtgttcaggtatttccacctgagccgaaagattctttcatgagagctttaattaattttgatggaagattacatttagaggcagcaa |
39319240 |
T |
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| Q |
416 |
aagctttggagaaaattgatggaaaggtgt |
445 |
Q |
| |
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||||| ||||||||||||| |||||||||| |
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| T |
39319239 |
aagctctggagaaaattgaaggaaaggtgt |
39319210 |
T |
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