View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_high_1 (Length: 1033)
Name: NF1883_high_1
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 17166494 - 17167014
Alignment:
| Q |
1 |
tccaagaatataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgatttt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17166494 |
tccaacaatataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgatttt |
17166593 |
T |
|
| Q |
101 |
gaaaacgagagactattttctttactctaataaaataaaggggtcaaaactgcaattaaacttagattaaactttttctaatccaaaagcaagtaaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17166594 |
gaaaacgagagactattttctttactctaataaaataaaggggtcaaaactgcaattaaacttagattaaactttttctagtccaaaagcaagtaaatta |
17166693 |
T |
|
| Q |
201 |
taacctgatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaattcacttgcagcatgtattatatcatcactattggtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17166694 |
taacctgatatggtttgtgaaatactgttgataaccattgtcataccaagaaggtaagctaattcacttgcagcatgtattatatcatcactattggtaa |
17166793 |
T |
|
| Q |
301 |
agatgaaggcaaattttcctttacataagaaaataacagtcatgaaaatgattccaaggagaagggactgagatattgccaccaagaaagagtatttggc |
400 |
Q |
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| T |
17166794 |
agatgaaggcaaatttttctttgcataagaaaataacagtcatgaaaatgattccaaggagaagggactgagatattgccaccaagaaagagtatttggc |
17166893 |
T |
|
| Q |
401 |
tgctcttggatgtgacatgccaagtgtgttagagacacgaacacttgcaagacattagaatcaatcaataattagtgtgcattgaaaaaatatattgaga |
500 |
Q |
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| T |
17166894 |
tgctcttggatgtgacatgccaagtgtattagagacacgaacacttgcaagacattagaatcaatcaataattagtgagcattgaaaaaatatattgaca |
17166993 |
T |
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| Q |
501 |
aataaatatttaatcaacatc |
521 |
Q |
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||||||||||||||||||||| |
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| T |
17166994 |
aataaatatttaatcaacatc |
17167014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 662 - 1016
Target Start/End: Original strand, 17167258 - 17167589
Alignment:
| Q |
662 |
atgagatgttggtagagttgttggaggatttggaggatattagggggagccaagtggaggatgtttggtggtggaggctcgaagacaacgggatatttac |
761 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
17167258 |
atgagatgttggtagagttgttggaggatttggaggatattagggagagccaagtggaggatgtttggtggtggaggctcgaag----cgggagatttac |
17167353 |
T |
|
| Q |
762 |
ggtgaaaattatgtatacaaagttggaaagggtgatgcttgcggacgattccatctcggatgaggcaggtagggtgctctcgcggatttggaagagcgac |
861 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17167354 |
ggtgaaaattatgtatacaaagttggaaggggtgatgcttgcggacgattccatttaggatgaggcaggtagggtgctctcgcggatttggaagagcgac |
17167453 |
T |
|
| Q |
862 |
gatccttctaaaattgcggcttttgctggaaactccttcataataggctccctccttcataataggctcccgacaaaagctaatctttccctaaggcaag |
961 |
Q |
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| T |
17167454 |
gatccttctaaaattgcggcttttgctggaaactccttcataaaa-------------------ggctcccgacaaaaggtaatctttccctaaggcaag |
17167534 |
T |
|
| Q |
962 |
tgttatcaccggatgtctctttagattgtgtgatgtgtgaaggggagttggaatt |
1016 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17167535 |
tgctatcaccggatgtctctttagattgtgtgatgtgtgaaggggagttggaatt |
17167589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 166 - 464
Target Start/End: Original strand, 17149013 - 17149311
Alignment:
| Q |
166 |
attaaactttttctaatccaa-aagcaagtaaattataacctgatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaatt |
264 |
Q |
| |
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||||||||||||||| || | |||||||||| | || |||||| || |||||||| ||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
17149013 |
attaaactttttctagtcaaccaagcaagtaa-taatcacctgaaatagtttgtgagatactgttgataaccatggttataccaagaaggtatgctaatt |
17149111 |
T |
|
| Q |
265 |
cacttgcagcatgtattatatcatcactattggtaaagatgaaggcaaattttcctttacataagaaaataacagtcatgaaaatgattccaaggagaag |
364 |
Q |
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|||||||||||||||| | ||||||||| |||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||| |||||| |||||| |
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| T |
17149112 |
cacttgcagcatgtatcaaatcatcactgttggtaaagatgaatgcaaacttttctttactcaagaaaataacagtcatgaaaatggttccaatgagaag |
17149211 |
T |
|
| Q |
365 |
ggactgagatattgccaccaagaaagagtatttggctgctcttggatgtgacatgccaagtgtgttagagacacgaacacttgcaagacattagaatcaa |
464 |
Q |
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| T |
17149212 |
agactgagacattgtcaccaagaaagagtacttggatgctcttggatgtgacatgccaagtgtattagagacacgaacacttgcaaggcattagaatcaa |
17149311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 203 - 465
Target Start/End: Original strand, 17135269 - 17135531
Alignment:
| Q |
203 |
acctgatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaattcacttgcagcatgtattatatcatcactattggtaaag |
302 |
Q |
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||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||| ||||||||| |
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| T |
17135269 |
acctgatatagtttgtgaaatactgttgagaaccatggttataccaagaaaatatgctaattcactagcagcatgtatcatatccacacttttggtaaag |
17135368 |
T |
|
| Q |
303 |
atgaaggcaaattttcctttacataagaaaataacagtcatgaaaatgattccaaggagaagggactgagatattgccaccaagaaagagtatttggctg |
402 |
Q |
| |
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||| |||||||| | ||| | ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||| || |
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| T |
17135369 |
atggtggcaaattcttgtttgctcaagaaaataacagtcatgaaaatgattccaatgagaagagactgagacattgctaccaagaaagagtatttggatg |
17135468 |
T |
|
| Q |
403 |
ctcttggatgtgacatgccaagtgtgttagagacacgaacacttgcaagacattagaatcaat |
465 |
Q |
| |
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|||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
17135469 |
ctcttggatgcgacattccaagtgtatgagagacacgaacacttgcaagacattagaatcaat |
17135531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 553 - 658
Target Start/End: Original strand, 17167046 - 17167151
Alignment:
| Q |
553 |
ggctgaataaaagtttgaaaagtggggaatggtgagaatacgagtttttggaatgtgccgtggagtggtgaactcgctctccagtacaaatatccaagac |
652 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
17167046 |
ggctgaataaaagtttgaaaagtggggaatggtgagaatacgagtttttggaatgtgccgtggagaggtgaactcgctctccggtacaaatatccaagac |
17167145 |
T |
|
| Q |
653 |
ttttgg |
658 |
Q |
| |
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|||||| |
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|
| T |
17167146 |
ttttgg |
17167151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17148750 - 17148823
Alignment:
| Q |
1 |
tccaagaatataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacaccta |
74 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
17148750 |
tccaacaatataataacatgccaagtttatgtaaccaaccataacttgccatccacatccaatgaccacaccta |
17148823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 17134890 - 17134965
Alignment:
| Q |
1 |
tccaagaatataatagcatgccaaatttatgtaaccaaccataacttgccacccacatccaattaccacacctata |
76 |
Q |
| |
|
||||| ||| ||||| ||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
17134890 |
tccaataatgtaataacatcccaagtttatgtaaccaaccataacttgccatccacatccaatgaccacacctata |
17134965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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