View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_high_14 (Length: 308)
Name: NF1883_high_14
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 37887531 - 37887804
Alignment:
| Q |
13 |
aaaatcatggaaaagggcaggaacaagaagagaccggttaagctctccctatcggagatcgaagcagcaaaatttctcgtacaactcagcagcggagatt |
112 |
Q |
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| T |
37887531 |
aaaatcatggaaaagggcaggaacaagaagaggccggttaagctctccctatcggagatcgaagcagcaaaatttctcgtacaactcagcagcggagatt |
37887630 |
T |
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| Q |
113 |
tcgaagaagatcaaaacagcaataacaacagcaatagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgctgtatcatcatctac |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37887631 |
tcgaagaagatcaaaacagcaataacaa------tagcaatagctatagcgtgagtcacaacaaggttgattccggtggtgatgttgtatcatcatctac |
37887724 |
T |
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| Q |
213 |
tgttttgtcagattctgaaagttgcgttgcaagaacaaataaaaggtatcgttacgttaatattgatgagttatatagag |
292 |
Q |
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| T |
37887725 |
tgttttgtcagattctgaaagttgctttgcaagaacaaataagaggtatcgttacgttaatattgatgagttatatagag |
37887804 |
T |
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