View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_high_15 (Length: 299)
Name: NF1883_high_15
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 8817872 - 8818140
Alignment:
| Q |
17 |
aatgtatacaacaaaactatggccaacaagtcgagttcccattatttaactctatgttcaattcactttaacaaaatacttataaatgttatagaagttt |
116 |
Q |
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| T |
8817872 |
aatgtatacaacataactatggccaacaagtcgagttcccattatttaactctatgttcaattcactttaacaaaatacttataaatgttatagaagttt |
8817971 |
T |
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| Q |
117 |
gaaatagaaactgaggcttcaagttggaaatttatacaacaaaactatgagtttgaaatgtatacagaataattagatcattatacttcaagaaatgact |
216 |
Q |
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| T |
8817972 |
gaaatagaaactgaggcttcaagttggaaatttatacaacaaaactatgagtttgaaatgtatacagaataattagatcattatacttcaagaaatgact |
8818071 |
T |
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| Q |
217 |
taagaaatctgttttctctcttgctttggccatcaatcatcatcaagcaatgttttatgattaacagaa |
285 |
Q |
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| T |
8818072 |
taagaaatctgttttctctcttgctttggccatcaatcatcatcaagcaatgttttatgattaacagaa |
8818140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 8816072 - 8816158
Alignment:
| Q |
111 |
aagtttgaaatagaaactgaggcttcaagttggaaatttatacaacaaaactatgagtttgaaatgtatacagaataattagatcattatactt |
204 |
Q |
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| T |
8816072 |
aagtttgaaatagaaattgaggcttcaa-------atgtatacaacaaaactatgagtttgaaatgtatacagaataatgagatcattatactt |
8816158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 9778053 - 9777919
Alignment:
| Q |
69 |
tatgttcaattcactttaacaaaatacttataaatgttatagaagtttgaaatagaaactgaggcttcaagttggaaatt-tatacaacaaaactatgag |
167 |
Q |
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| T |
9778053 |
tatgttcaattcacttcaactaaatacttataaaatgtatacaagtttgaaacaa----tgaggctttaagttgaaaaatgtatacaacataacaataag |
9777958 |
T |
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| Q |
168 |
tttgaaatgtatacagaataattagatcattatacttca |
206 |
Q |
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| T |
9777957 |
tttcgaatgtatacaaaataatgagatcattatacttca |
9777919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 9777858 - 9777782
Alignment:
| Q |
206 |
aagaaatgacttaagaaatctgttttctctcttgctttggccatcaatcatcatcaagcaatgttttatgattaaca |
282 |
Q |
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| T |
9777858 |
aagaaatgacttaattactctgttttatctcttgctttgttcatcagtcgtcacaaaacagtgttttatgattaaca |
9777782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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