View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883_high_20 (Length: 263)

Name: NF1883_high_20
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883_high_20
NF1883_high_20
[»] scaffold1678 (1 HSPs)
scaffold1678 (1-143)||(1341-1483)
[»] chr2 (33 HSPs)
chr2 (4-185)||(32241712-32241893)
chr2 (10-179)||(32294721-32294890)
chr2 (96-191)||(9731638-9731734)
chr2 (4-75)||(24434067-24434138)
chr2 (107-183)||(42242495-42242571)
chr2 (91-211)||(3857860-3857981)
chr2 (91-191)||(31846479-31846580)
chr2 (92-184)||(43618144-43618236)
chr2 (107-215)||(34342908-34343016)
chr2 (105-191)||(38295036-38295123)
chr2 (96-183)||(40830328-40830415)
chr2 (91-191)||(2307868-2307969)
chr2 (136-191)||(18726975-18727031)
chr2 (91-191)||(41979393-41979494)
chr2 (95-179)||(45160613-45160697)
chr2 (96-179)||(38411938-38412021)
chr2 (91-182)||(43304588-43304679)
chr2 (135-191)||(30851385-30851442)
chr2 (91-144)||(12520314-12520367)
chr2 (142-179)||(15926689-15926726)
chr2 (88-149)||(18899241-18899302)
chr2 (136-191)||(13908637-13908693)
chr2 (91-179)||(33263459-33263547)
chr2 (222-252)||(3339173-3339203)
chr2 (132-178)||(13327673-13327719)
chr2 (91-149)||(35403912-35403970)
chr2 (223-252)||(2755237-2755266)
chr2 (7-44)||(32293245-32293282)
chr2 (225-253)||(52326-52354)
chr2 (225-253)||(21633354-21633382)
chr2 (224-252)||(32661402-32661430)
chr2 (144-180)||(35403978-35404014)
chr2 (224-252)||(36286441-36286469)
[»] chr7 (21 HSPs)
chr7 (92-215)||(27149348-27149472)
chr7 (91-183)||(42611214-42611306)
chr7 (91-191)||(23017671-23017772)
chr7 (105-215)||(33496744-33496855)
chr7 (137-214)||(26201210-26201288)
chr7 (84-191)||(1253836-1253943)
chr7 (120-191)||(14731740-14731812)
chr7 (136-191)||(21024621-21024677)
chr7 (107-183)||(21486833-21486909)
chr7 (90-149)||(37915397-37915456)
chr7 (91-146)||(43172822-43172877)
chr7 (137-183)||(42044191-42044237)
chr7 (108-149)||(5771500-5771541)
chr7 (136-192)||(5771541-5771598)
chr7 (136-191)||(35314084-35314140)
chr7 (221-252)||(40139848-40139879)
chr7 (91-149)||(4639219-4639277)
chr7 (137-179)||(38911041-38911083)
chr7 (112-149)||(14742205-14742242)
chr7 (152-191)||(6269115-6269155)
chr7 (220-252)||(46622548-46622580)
[»] chr1 (38 HSPs)
chr1 (91-191)||(47370882-47370983)
chr1 (95-180)||(51903548-51903633)
chr1 (112-191)||(15928279-15928359)
chr1 (88-191)||(49236316-49236420)
chr1 (90-215)||(27257569-27257695)
chr1 (107-215)||(49971019-49971128)
chr1 (91-191)||(25254229-25254329)
chr1 (91-191)||(48965829-48965930)
chr1 (107-183)||(2292596-2292672)
chr1 (107-215)||(52182683-52182792)
chr1 (91-182)||(11578454-11578545)
chr1 (112-191)||(42303728-42303808)
chr1 (136-191)||(49452417-49452473)
chr1 (91-182)||(1242637-1242728)
chr1 (91-182)||(8148019-8148110)
chr1 (91-191)||(34750991-34751092)
chr1 (96-176)||(3583311-3583391)
chr1 (88-191)||(43855087-43855191)
chr1 (91-149)||(3593980-3594038)
chr1 (91-191)||(34019659-34019760)
chr1 (91-147)||(5208613-5208669)
chr1 (152-214)||(50038026-50038089)
chr1 (91-149)||(4006070-4006128)
chr1 (91-149)||(9174593-9174651)
chr1 (91-149)||(18246882-18246940)
chr1 (91-149)||(41354143-41354201)
chr1 (91-149)||(51107905-51107963)
chr1 (88-144)||(26758317-26758373)
chr1 (147-192)||(19863577-19863623)
chr1 (140-186)||(32759440-32759486)
chr1 (91-168)||(35193745-35193822)
chr1 (224-252)||(15911670-15911698)
chr1 (152-191)||(28403322-28403362)
chr1 (152-191)||(33886366-33886406)
chr1 (152-191)||(33957846-33957886)
chr1 (224-252)||(35580736-35580764)
chr1 (95-183)||(42637479-42637567)
chr1 (221-253)||(46895827-46895859)
[»] chr8 (23 HSPs)
chr8 (91-183)||(42423902-42423994)
chr8 (91-191)||(8029166-8029267)
chr8 (89-210)||(18984999-18985121)
chr8 (91-220)||(35880022-35880152)
chr8 (107-191)||(24082875-24082960)
chr8 (91-191)||(41394551-41394652)
chr8 (91-186)||(3007131-3007226)
chr8 (92-183)||(12737396-12737487)
chr8 (107-183)||(12521735-12521811)
chr8 (136-191)||(26619984-26620040)
chr8 (136-183)||(27974323-27974370)
chr8 (136-183)||(28031592-28031639)
chr8 (92-183)||(44977438-44977529)
chr8 (113-202)||(24067476-24067566)
chr8 (136-184)||(7761208-7761256)
chr8 (152-215)||(33177262-33177326)
chr8 (137-191)||(6387259-6387314)
chr8 (91-149)||(19484915-19484973)
chr8 (136-191)||(27869131-27869187)
chr8 (91-148)||(6387200-6387257)
chr8 (115-214)||(4870502-4870602)
chr8 (221-253)||(35795618-35795650)
chr8 (221-253)||(45308449-45308481)
[»] chr3 (32 HSPs)
chr3 (92-215)||(25050228-25050352)
chr3 (92-208)||(7667403-7667520)
chr3 (92-191)||(24063984-24064083)
chr3 (92-182)||(53836614-53836704)
chr3 (91-191)||(43173581-43173682)
chr3 (112-214)||(21718099-21718201)
chr3 (88-191)||(4962021-4962123)
chr3 (136-191)||(7436915-7436971)
chr3 (93-210)||(27163017-27163135)
chr3 (136-191)||(32766605-32766661)
chr3 (91-179)||(53644751-53644839)
chr3 (89-149)||(8599658-8599718)
chr3 (95-182)||(22488419-22488511)
chr3 (107-183)||(27988265-27988341)
chr3 (136-191)||(33693956-33694012)
chr3 (136-191)||(49459055-49459111)
chr3 (92-179)||(37833388-37833475)
chr3 (92-183)||(45731315-45731406)
chr3 (136-191)||(47466876-47466931)
chr3 (91-149)||(49296816-49296874)
chr3 (107-160)||(21385823-21385876)
chr3 (93-149)||(7436859-7436915)
chr3 (91-147)||(25932150-25932206)
chr3 (91-149)||(33694012-33694070)
chr3 (223-253)||(40989685-40989715)
chr3 (136-182)||(49296770-49296816)
chr3 (136-191)||(9818050-9818105)
chr3 (225-253)||(17258217-17258245)
chr3 (137-212)||(30237957-30238033)
chr3 (221-253)||(40988593-40988625)
chr3 (224-252)||(43001912-43001940)
chr3 (224-252)||(53764573-53764601)
[»] chr6 (16 HSPs)
chr6 (89-191)||(16439379-16439482)
chr6 (91-191)||(31534419-31534520)
chr6 (91-210)||(31975066-31975186)
chr6 (90-184)||(24202799-24202893)
chr6 (112-215)||(28042050-28042151)
chr6 (112-197)||(32567630-32567721)
chr6 (107-180)||(2607630-2607703)
chr6 (136-191)||(31995709-31995765)
chr6 (91-149)||(1462728-1462786)
chr6 (91-149)||(6789083-6789141)
chr6 (91-149)||(10110658-10110716)
chr6 (224-253)||(2173906-2173935)
chr6 (223-252)||(4037035-4037064)
chr6 (220-252)||(11745992-11746024)
chr6 (224-252)||(14169005-14169033)
chr6 (224-252)||(33274230-33274258)
[»] chr4 (33 HSPs)
chr4 (92-200)||(17503227-17503336)
chr4 (95-191)||(12754996-12755093)
chr4 (90-214)||(29509373-29509498)
chr4 (91-220)||(24454223-24454353)
chr4 (91-181)||(24965804-24965894)
chr4 (107-191)||(33141011-33141096)
chr4 (91-183)||(32890573-32890665)
chr4 (88-183)||(46862254-46862349)
chr4 (91-191)||(50517781-50517882)
chr4 (136-215)||(872156-872236)
chr4 (89-191)||(41469634-41469737)
chr4 (90-215)||(55166015-55166141)
chr4 (90-191)||(23170114-23170216)
chr4 (91-177)||(56423416-56423502)
chr4 (107-191)||(8562520-8562605)
chr4 (91-191)||(25014019-25014120)
chr4 (95-191)||(26973009-26973106)
chr4 (91-179)||(40163317-40163405)
chr4 (120-183)||(26490618-26490681)
chr4 (91-182)||(40487063-40487154)
chr4 (91-175)||(6486757-6486841)
chr4 (91-179)||(26449199-26449287)
chr4 (91-182)||(23670917-23671008)
chr4 (133-182)||(29469819-29469868)
chr4 (136-191)||(4511416-4511472)
chr4 (95-179)||(9973423-9973507)
chr4 (136-179)||(54561800-54561843)
chr4 (112-149)||(872236-872273)
chr4 (90-183)||(22480324-22480417)
chr4 (223-252)||(26858341-26858370)
chr4 (224-252)||(2016253-2016281)
chr4 (136-191)||(29965893-29965949)
chr4 (136-215)||(53573698-53573778)
[»] scaffold0116 (1 HSPs)
scaffold0116 (112-212)||(4922-5023)
[»] scaffold0024 (1 HSPs)
scaffold0024 (107-210)||(136191-136295)
[»] chr5 (22 HSPs)
chr5 (96-215)||(21490250-21490369)
chr5 (91-215)||(29759277-29759401)
chr5 (92-182)||(29716216-29716306)
chr5 (123-215)||(16548559-16548652)
chr5 (91-191)||(33892262-33892363)
chr5 (91-183)||(35701920-35702012)
chr5 (90-182)||(5650128-5650220)
chr5 (96-214)||(31914033-31914152)
chr5 (91-182)||(7124228-7124319)
chr5 (91-182)||(21238203-21238294)
chr5 (93-191)||(34910168-34910267)
chr5 (136-191)||(25869344-25869400)
chr5 (152-214)||(3032768-3032831)
chr5 (136-179)||(32236946-32236989)
chr5 (217-252)||(40768175-40768210)
chr5 (91-149)||(37797459-37797517)
chr5 (107-191)||(2674525-2674610)
chr5 (224-253)||(38973326-38973355)
chr5 (224-252)||(12610242-12610270)
chr5 (140-191)||(16801262-16801314)
chr5 (89-149)||(28622506-28622566)
chr5 (225-253)||(38162592-38162620)
[»] scaffold0246 (1 HSPs)
scaffold0246 (91-182)||(25002-25093)
[»] scaffold0002 (1 HSPs)
scaffold0002 (90-149)||(16136-16195)
[»] scaffold0286 (1 HSPs)
scaffold0286 (224-253)||(20106-20135)
[»] scaffold0019 (1 HSPs)
scaffold0019 (224-252)||(122617-122645)
[»] scaffold0016 (1 HSPs)
scaffold0016 (225-253)||(199665-199693)


Alignment Details
Target: scaffold1678 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 1341 - 1483
Alignment:
Q  1 gtcttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaattggaaccaaggtttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1341 gtcttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaattggaaccaaggtttta 1440  T
Q  101 catcttgagaatttaccttaactcgttttgcctaggtaaactc 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1441 catcttgagaatttaccttaactcgttttgcctaggtaaactc 1483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 32241712 - 32241893
Alignment:
Q  4 ttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaattggaaccaaggttttacat 103  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||  |||||||||||||||||||||||||||||| | |||||||||    
T  32241712 ttggacatgatttattttaatttattttatctaaattagagaaaataaacaaaatgcctgtgtagttaaaaagttcaaaattggaaccgaagttttacat 32241811  T
Q  104 cttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaat 185  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  32241812 cttgagagtttacctcaactcgttttacctaggtaaactcgactcgagaactcgtacgaatttacctaaaattaaaattaat 32241893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 32294890 - 32294721
Alignment:
Q  10 atgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaattggaaccaaggttttacatcttgag 109  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  32294890 atgatttattttaatttcttttatcttaattagaaaaaagaaacaaaatgcttgtttagttaaaaagttcaaaattggaaccaaggttttacatcttaag 32294791  T
Q  110 aatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    | ||| ||| ||||||||||||||| |||||||||| | |||||||||||| ||||||||| ||||||||    
T  32294790 agtttgcctcaactcgttttgcctaagtaaactcgagttgagaactcgtacgagtttaccttaaattaaa 32294721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 9731734 - 9731638
Alignment:
Q  96 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9731734 ttttacaactcgagagtttaccttaacttgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 9731638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 24434067 - 24434138
Alignment:
Q  4 ttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaa 75  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  24434067 ttggacatgatttattttaatttattttatctaaattagaaaaaataaacaaaatgtttgtgtagttaaaaa 24434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 42242571 - 42242495
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  42242571 gagagtttacctcaactcgctttgcctaggtaaactcgactcgagaactcgtacgagttgacctaaaattaaaatta 42242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 3857860 - 3857981
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaat-taataaaa 189  Q
    |||||||||||| ||| ||| ||||||| |||||||||||  ||| |||  ||||||||| ||||||||| ||||||||||||||||||||  |||||||    
T  3857860 caaggttttacaacttaagagtttacctcaactcgttttgtttagataagttcgactcgaaaactcgtactagtttacctaaaattaaaatgaaataaaa 3857959  T
Q  190 ttagttatttacaagacatatg 211  Q
    ||  ||||||||| ||||||||    
T  3857960 ttcattatttacatgacatatg 3857981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 31846479 - 31846580
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || || |||| |||| || ||||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  31846479 caaggttttgcaactcgagagtttatctcaactcattttgcctaggtaaactcgacttgagaactcgtacgagtttacctaaatttaaaattatataaaa 31846578  T
Q  190 tt 191  Q
    ||    
T  31846579 tt 31846580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 43618236 - 43618144
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaa 184  Q
    ||||||||| | || |||| ||||||| || |  |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43618236 aaggttttataactcgagagtttacctcaatttattttgcttaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattaa 43618144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 34343016 - 34342908
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaaga 205  Q
    |||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| | ||||||| |||||||||||| ||||||||  |||| |||| ||    
T  34343016 gagagtttacctcaactcgttttgcttaggtaaactcgactcaagaactcgtacgaatttacct-aaattaaaattatataaaatttattatatacatga 34342918  T
Q  206 catatgtaaa 215  Q
    ||||| ||||    
T  34342917 catatataaa 34342908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 38295036 - 38295123
Alignment:
Q  105 ttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||||||||  | ||||| ||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  38295036 ttgagaatttatttcaactcattttgtctaggttaactcgactcgagaacttgtacgagtttacctaaaattaaaattatataaaatt 38295123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 40830415 - 40830328
Alignment:
Q  96 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    ||||||| || |||| ||||||| |||||||||||| || ||||||||||||  ||||||||||| | ||||||||||||||||||||    
T  40830415 ttttacaactcgagagtttacctcaactcgttttgcttaagtaaactcgacttcagaactcgtacgaatttacctaaaattaaaatta 40830328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 2307868 - 2307969
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| |||| |||||||  |||||| |||||||||||||||||| ||||| ||| |||||||||| || |||||||| ||||||    
T  2307868 caaggttttacaactcgagagtttatcttaacttattttgcttaggtaaactcgactcgataactcttacgagtttacctacaactaaaattatataaaa 2307967  T
Q  190 tt 191  Q
    ||    
T  2307968 tt 2307969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 18726975 - 18727031
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18726975 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 18727031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 41979494 - 41979393
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| ||||||| ||||||| ||||||||||  |||  |||| |||| ||   ||||||||| |||||||||||||||||||||| ||||||    
T  41979494 caaggttttacaacttgagagtttacctcaactcgttttaactatataaattcgaatcataaactcgtacgagtttacctaaaattaaaattatataaaa 41979395  T
Q  190 tt 191  Q
    ||    
T  41979394 tt 41979393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 45160613 - 45160697
Alignment:
Q  95 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    |||||||| || |||||||||||| ||||| ||||  ||| |||||||||| |||  ||||||||| ||||||||||||||||||    
T  45160613 gttttacaactcgagaatttacctcaactcattttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaa 45160697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 38411938 - 38412021
Alignment:
Q  96 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    ||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| ||||||||||||||||||    
T  38411938 ttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaa 38412021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 43304588 - 43304679
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||||||| ||| | ||||||||| || ||||||| | ||||||||||| |||| | || |  |||||||||||||||||||||||||    
T  43304588 caaggttttacaacttaacaatttacctcaattcgttttacttaggtaaactcaactcaaaaatttatacaagtttacctaaaattaaaatt 43304679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 30851442 - 30851385
Alignment:
Q  135 ggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  30851442 ggtaaagtcgactcgagaactcgtatgagtttacctaaaattaaaattatataaaatt 30851385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 12520367 - 12520314
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcg 144  Q
    ||||||||| || ||||||| ||||||| |||||||||||||||||||| ||||    
T  12520367 caaggttttgcaacttgagagtttacctcaactcgttttgcctaggtaagctcg 12520314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 15926726 - 15926689
Alignment:
Q  142 tcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15926726 tcgactcgagaactcgtacgagtttacctaaaattaaa 15926689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 18899241 - 18899302
Alignment:
Q  88 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    |||||| ||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  18899241 aaccaaagttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 18899302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 13908693 - 13908637
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||  || |||||| |||||||||||||||||||||| ||||||||    
T  13908693 gtaaactcgactcgtaaattcgtacgagtttacctaaaattaaaattatataaaatt 13908637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 33263547 - 33263459
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    |||||||||||| || |||| ||||||| |||| |||||  ||| |||||||||| |||  ||||| ||| | ||||||||||||||||    
T  33263547 caaggttttacaactcgagagtttacctcaacttgttttagctatgtaaactcgaatcgtaaactcatacgaatttacctaaaattaaa 33263459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 3339203 - 3339173
Alignment:
Q  222 ataaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||||    
T  3339203 ataaggcttaattgcacttttggccccctat 3339173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 13327673 - 13327719
Alignment:
Q  132 ctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaa 178  Q
    |||||||| |||||||||  ||||||||| |||||||||||||||||    
T  13327673 ctaggtaatctcgactcgtaaactcgtacgagtttacctaaaattaa 13327719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 35403912 - 35403970
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    |||| |||| || ||||||| ||||||| |||||||||| | |||||||||||||||||    
T  35403912 caagattttgcaacttgagagtttacctcaactcgttttacataggtaaactcgactcg 35403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 252
Target Start/End: Complemental strand, 2755266 - 2755237
Alignment:
Q  223 taaggcttaattgcacttttggccccctat 252  Q
    ||||||||||||||||||||||||||||||    
T  2755266 taaggcttaattgcacttttggccccctat 2755237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 32293282 - 32293245
Alignment:
Q  7 gacatgatttattttaatttcttttatctcaattagaa 44  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  32293282 gacatgatttattttaatgtcttttatctcaatcagaa 32293245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 52354 - 52326
Alignment:
Q  225 aggcttaattgcacttttggccccctatg 253  Q
    |||||||||||||||||||||||||||||    
T  52354 aggcttaattgcacttttggccccctatg 52326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 21633382 - 21633354
Alignment:
Q  225 aggcttaattgcacttttggccccctatg 253  Q
    |||||||||||||||||||||||||||||    
T  21633382 aggcttaattgcacttttggccccctatg 21633354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 32661402 - 32661430
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  32661402 aaggcttaattgcacttttggccccctat 32661430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 35403978 - 35404014
Alignment:
Q  144 gactcgagaactcgtacaagtttacctaaaattaaaa 180  Q
    ||||||||||||||| | |||||||||||||||||||    
T  35403978 gactcgagaactcgtgcgagtttacctaaaattaaaa 35404014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 36286469 - 36286441
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  36286469 aaggcttaattgcacttttggccccctat 36286441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 27149472 - 27149348
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 190  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| ||||| ||| ||||    
T  27149472 aaggttttacaacttaagagtttaccttaactcgttttgcctaagtaagctcgactcgagaactcgtacgagtttacctaaaatttaaattaaattaaat 27149373  T
Q  191 tagttatttacaagacatatgtaaa 215  Q
    |  ||||||||| ||||||||||||    
T  27149372 ttattatttacatgacatatgtaaa 27149348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 42611306 - 42611214
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42611306 caaggttttacaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaatta 42611214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 23017772 - 23017671
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| ||||||| ||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  23017772 caaggttttacaactcgagagtttacctcaactcgttttgactagataaactcgacttgagaactcgtataagtttacctaaaattaaaattatataaaa 23017673  T
Q  190 tt 191  Q
    ||    
T  23017672 tt 23017671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 33496744 - 33496855
Alignment:
Q  105 ttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaa 203  Q
    |||||||||||||| || |||||||||||| ||||| |||||||   ||||||||| |||||| |||||||||||||| |||||||||  |||||||||     
T  33496744 ttgagaatttacctcaattcgttttgcctaagtaaattcgactcataaactcgtacgagtttatctaaaattaaaattaaataaaatttattatttacat 33496843  T
Q  204 gacatatgtaaa 215  Q
    ||||||||||||    
T  33496844 gacatatgtaaa 33496855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 26201210 - 26201288
Alignment:
Q  137 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaagacatatgtaa 214  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||  ||||||||| |||||||||||    
T  26201210 taaactcgactcgagaactcgtacaagtttaggtaaaattaaaattaaataaaatttattatttacatgacatatgtaa 26201288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 1253836 - 1253943
Alignment:
Q  84 ttggaaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||| |||||||||||| ||  ||| ||||||| |||||||||| |||  |||||||||| |||  ||||||||| ||||||||||||||||||||||    
T  1253836 ttggaatcaaggttttaca-ctcaagagtttacctcaactcgttttacctttgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaatta 1253934  T
Q  184 -ataaaatt 191  Q
     ||||||||    
T  1253935 tataaaatt 1253943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 14731740 - 14731812
Alignment:
Q  120 aactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||  ||| |||||||||| |||  ||||||||| |||||||||||||||||||||| ||||||||    
T  14731740 aactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 14731812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 21024677 - 21024621
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||    
T  21024677 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 21024621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 21486909 - 21486833
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||| ||||||| ||||| ||||   || ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  21486909 gagagtttacctcaactcattttctttaagtaaactcgactcgagaactcgtatgagtttagctaaaattaaaatta 21486833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 37915397 - 37915456
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    |||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  37915397 ccaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 37915456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 43172877 - 43172822
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgac 146  Q
    |||||||||||| || |||| ||||||| ||||| |||||||||||||||||||||    
T  43172877 caaggttttacaactcgagagtttacctcaactcattttgcctaggtaaactcgac 43172822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 42044237 - 42044191
Alignment:
Q  137 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||    
T  42044237 taaattcgactcgagaactcgtatgagtttacctaaaattaaaatta 42044191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 5771500 - 5771541
Alignment:
Q  108 agaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  5771500 agaatttacctcaactcgttttgcctaggtaaacttgactcg 5771541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 5771541 - 5771598
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatta 192  Q
    ||||||||||||||| || |||||| ||||||||||||||| |||||| |||||||||    
T  5771541 gtaaactcgactcgaaaattcgtacgagtttacctaaaattgaaattatataaaatta 5771598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 35314140 - 35314084
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||  ||||||||  |||||||||||||||||||||| ||||||||    
T  35314140 gtaaactcgactcgtaaactcgtatgagtttacctaaaattaaaattatataaaatt 35314084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 40139879 - 40139848
Alignment:
Q  221 aataaggcttaattgcacttttggccccctat 252  Q
    ||||||||||||||||||||||||||||||||    
T  40139879 aataaggcttaattgcacttttggccccctat 40139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 4639219 - 4639277
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| ||||||||||  ||||||||||||||||||    
T  4639219 caaggttttgcaactcgagagtttacctcaactcgttttaactaggtaaactcgactcg 4639277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 38911083 - 38911041
Alignment:
Q  137 taaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  38911083 taaactcgactcgtaaactcgtacgagtttacctaaaattaaa 38911041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 14742242 - 14742205
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  14742242 tttacctcaactcgttttacctaggtaaactcgactcg 14742205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 6269155 - 6269115
Alignment:
Q  152 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  6269155 aactcgtacgagtttacctaaaattaaaattatataaaatt 6269115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 46622548 - 46622580
Alignment:
Q  220 taataaggcttaattgcacttttggccccctat 252  Q
    ||||||||||||||||||||||||| |||||||    
T  46622548 taataaggcttaattgcacttttggacccctat 46622580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 47370882 - 47370983
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  47370882 caaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaa 47370981  T
Q  190 tt 191  Q
    ||    
T  47370982 tt 47370983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 51903633 - 51903548
Alignment:
Q  95 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaa 180  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||    
T  51903633 gttttacatcttgagagtttacctcaactcgttttgcctaggtaagctcgactcgagaactcgtacgagtttacttaaatttaaaa 51903548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 15928359 - 15928279
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  15928359 tttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattagaattatataaaatt 15928279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 49236316 - 49236420
Alignment:
Q  88 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ata 186  Q
    ||||||| ||||||| ||  ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||    
T  49236316 aaccaagattttacaactcaagagtttacctcaactcgttttgcctaggtaaactcgactcgaaaactcgtacgagtttacataaaattaaaattatata 49236415  T
Q  187 aaatt 191  Q
    |||||    
T  49236416 aaatt 49236420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 27257569 - 27257695
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaa 188  Q
    ||||||||||||| || |||| ||||||| ||||||||||  | | ||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||    
T  27257569 ccaaggttttacaactcgagagtttacctcaactcgttttatccaagtaaactcgactcgagaactcttacgagtttacctaaaattaaaattaaattaa 27257668  T
Q  189 attagttatttacaagacatatgtaaa 215  Q
    |||  ||||||||| ||||||| ||||    
T  27257669 atttattatttacatgacatatctaaa 27257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 49971019 - 49971128
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaaga 205  Q
    |||| ||||||| || | |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||  ||||||||| ||    
T  49971019 gagagtttacctcaatttgttttgctcaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattaaataaagtttattatttacatga 49971118  T
Q  206 catatgtaaa 215  Q
    ||||||||||    
T  49971119 catatgtaaa 49971128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 25254329 - 25254229
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| ||||| | |||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||    
T  25254329 caaggttttacaactcgagagtttacttcaactcgttttacctaggtaaactcgactcgagaacttgtacgagtttacct-aaattaaaattatataaaa 25254231  T
Q  190 tt 191  Q
    ||    
T  25254230 tt 25254229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 48965829 - 48965930
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || || |||||||||||| |||| ||||||||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||| ||||||    
T  48965829 caaggttttgcaactcgagaatttacctcaacttgttttgccttggtaaactcaactcgagaactcctacgagttaacctaaaattaaaattatataaaa 48965928  T
Q  190 tt 191  Q
    ||    
T  48965929 tt 48965930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 2292596 - 2292672
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||| ||||||| ||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2292596 gagagtttacctcaactcattttgtctaggtaaactcgactcgggaactcgtacgagtttacctaaaattaaaatta 2292672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 52182792 - 52182683
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaaga 205  Q
    |||| |||| || ||||||||||| | |||||||||||| ||||||||| |||| ||||||  ||||||||||||| |||||||||  ||||||||| ||    
T  52182792 gagagtttatctcaactcgttttgtccaggtaaactcgattcgagaacttgtacgagtttatttaaaattaaaattaaataaaatttattatttacatga 52182693  T
Q  206 catatgtaaa 215  Q
    ||||||||||    
T  52182692 catatgtaaa 52182683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 11578454 - 11578545
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    ||||||||| || || |||| ||||||| |||||||||| ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||    
T  11578454 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaatt 11578545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 42303728 - 42303808
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||| |||||||||||  |||||||| ||||||||||||||||||  | |||||||||||||||||||| ||||||||    
T  42303728 tttacctcaactcgttttgtttaggtaaattcgactcgagaactcgtatgactttacctaaaattaaaattatataaaatt 42303808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 49452417 - 49452473
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  49452417 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 49452473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 1242637 - 1242728
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    ||||||||| || || |||| ||||||| |||||||||| ||||| ||||||||| |||  ||||||||| ||||||||||| |||||||||    
T  1242637 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaactcgaatcgtaaactcgtacgagtttacctaagattaaaatt 1242728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 8148110 - 8148019
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    ||||||||| || || |||| ||||||| ||||||||||  |||||||||||||| |||  ||||||||| ||||||||||||||| |||||    
T  8148110 caaggttttgcaactcgagagtttacctcaactcgttttagctaggtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaatt 8148019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 34750991 - 34751092
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| ||||||| ||||||||||  | | |||||||||| |||  ||||||||| | |||||||||||||||||||| ||||||    
T  34750991 caaggttttacaactcgagagtttacctcaactcgttttagcaatgtaaactcgaatcgtaaactcgtacgaatttacctaaaattaaaattatataaaa 34751090  T
Q  190 tt 191  Q
    ||    
T  34751091 tt 34751092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 3583311 - 3583391
Alignment:
Q  96 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaatt 176  Q
    ||||||| || |||| ||||||| ||||| |||||| |||||||||||||||||||||||||||  ||||||  |||||||    
T  3583311 ttttacaactcgagagtttacctcaactcattttgcttaggtaaactcgactcgagaactcgtaagagtttatataaaatt 3583391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 43855191 - 43855087
Alignment:
Q  88 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ata 186  Q
    ||||||| ||||||| || |||| ||||| | |||||||||| |||   ||||||||||||   ||||||||| |||||||||||||||||||||| |||    
T  43855191 aaccaagattttacaactcgagagtttacgtcaactcgttttaccttattaaactcgactcataaactcgtacgagtttacctaaaattaaaattatata 43855092  T
Q  187 aaatt 191  Q
    |||||    
T  43855091 aaatt 43855087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 3594038 - 3593980
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    |||||||||||| || |||| ||||||| |||||||||| |||||||||||||||||||    
T  3594038 caaggttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 3593980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 34019760 - 34019659
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| ||||||| ||||  ||||  ||| ||||||| || |||  ||||||||| |||||||||||||||||||||| ||||||    
T  34019760 caaggttttacaactcgagagtttacctcaacttattttagctatgtaaacttgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaa 34019661  T
Q  190 tt 191  Q
    ||    
T  34019660 tt 34019659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 5208613 - 5208669
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgact 147  Q
    |||||||||||| || |||| ||||||| |||||||||| |||||||||||||||||    
T  5208613 caaggttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgact 5208669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 50038026 - 50038089
Alignment:
Q  152 aactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaa 214  Q
    ||||| |||||||||||||||||||||||||| ||||||||  |||| |||| |||||||||||    
T  50038026 aactcttacaagtttacctaaaattaaaattatataaaatttattatatacatgacatatgtaa 50038089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 4006128 - 4006070
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  4006128 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 4006070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 9174651 - 9174593
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  9174651 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 9174593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 18246882 - 18246940
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  18246882 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 18246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 41354201 - 41354143
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  41354201 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 41354143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 51107963 - 51107905
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  51107963 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 51107905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 26758373 - 26758317
Alignment:
Q  88 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcg 144  Q
    |||||||||||| || || |||| ||||||| |||||||||| ||||||||||||||    
T  26758373 aaccaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcg 26758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 19863623 - 19863577
Alignment:
Q  147 tcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatta 192  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||    
T  19863623 tcgagaactcgtacgagtttaactaaaattaaaattatataaaatta 19863577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 32759440 - 32759486
Alignment:
Q  140 actcgactcgagaactcgtacaagtttacctaaaattaaaattaata 186  Q
    |||||||||||||| |||||| | |||||||||||| ||||||||||    
T  32759440 actcgactcgagaattcgtacgaatttacctaaaataaaaattaata 32759486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 35193822 - 35193745
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttac 168  Q
    |||| ||||||| || |||| ||||| | || ||||||||  ||| |||| ||||||||||||||||||| |||||||    
T  35193822 caagattttacaactcgagagtttacttcaattcgttttgtttagataaattcgactcgagaactcgtacgagtttac 35193745  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 15911670 - 15911698
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  15911670 aaggcttaattgcacttttggccccctat 15911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 28403322 - 28403362
Alignment:
Q  152 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  28403322 aactcgtacgagtttacctaaaattaaaattatataaaatt 28403362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 33886366 - 33886406
Alignment:
Q  152 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  33886366 aactcgtacgagtttacctaaaattaaaattatataaaatt 33886406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 33957886 - 33957846
Alignment:
Q  152 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  33957886 aactcgtacgagtttacctaaaattaaaattatataaaatt 33957846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 35580736 - 35580764
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  35580736 aaggcttaattgcacttttggccccctat 35580764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 42637479 - 42637567
Alignment:
Q  95 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||| ||  ||| |||| || |||||||| | |||| |||||||||| | |  ||||||||  ||||||||||||||||||||||    
T  42637479 gttttacaactcaagagtttatctcaactcgttatacctatgtaaactcgaattgtaaactcgtatgagtttacctaaaattaaaatta 42637567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 46895859 - 46895827
Alignment:
Q  221 aataaggcttaattgcacttttggccccctatg 253  Q
    ||||||||||||||||| |||||||||||||||    
T  46895859 aataaggcttaattgcagttttggccccctatg 46895827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 42423994 - 42423902
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    ||||||||| || ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42423994 caaggttttgcaacttgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaatta 42423902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 8029166 - 8029267
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || || |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8029166 caaggttttgcaactcgagagtttacctcaactcgtttcgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaa 8029265  T
Q  190 tt 191  Q
    ||    
T  8029266 tt 8029267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 18985121 - 18984999
Alignment:
Q  89 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataa 187  Q
    ||||||||||| || || |||| ||||||| |||| |||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||    
T  18985121 accaaggttttgcaactcgagagtttacctcaacttgttttgtctaggtaaacttgactcgagaactcgcacgagtttacctaaaattaaaattatataa 18985022  T
Q  188 aattagttatttacaagacatat 210  Q
    ||||  |||| | ||||||||||    
T  18985021 aatttattatgtgcaagacatat 18984999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 35880152 - 35880022
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaa 189  Q
    |||||||||||   | |||| |||| || |||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  35880152 caaggttttacgattagagagtttagctcaactcgttttgcttagttaaactcgacttgagaactcgtacgagtttatctaaaattaaaattaaataaaa 35880053  T
Q  190 ttagttatttacaagacatatgtaaattact 220  Q
    ||  ||||||||| |||||||||||| ||||    
T  35880052 tttattatttacatgacatatgtaaactact 35880022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 24082960 - 24082875
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||    
T  24082960 gagagtttacctcaactcgttttgcctaggtaaactcgactagagaactcgtacgagtttacctaaaattaatattatataaaatt 24082875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 41394652 - 41394551
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||  |||||| |||||| ||||||    
T  41394652 caaggttttacaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaactcgtacgagtttacaaaaaatttaaattatataaaa 41394553  T
Q  190 tt 191  Q
    ||    
T  41394552 tt 41394551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 3007131 - 3007226
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaata 186  Q
    |||||||||||| || |||| ||||||| ||||||||||||||||  |||||||| ||||||| |||||| |||||||||||||||||||| ||||    
T  3007131 caaggttttacaactcgagagtttacctcaactcgttttgcctagcaaaactcgattcgagaattcgtacgagtttacctaaaattaaaatcaata 3007226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 12737396 - 12737487
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||||||  | |||| ||||||| |||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||| |||||||    
T  12737396 aaggttttacaattcgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaagtcgtacgagttaacctaaaatgaaaatta 12737487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 12521735 - 12521811
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||| ||||||| ||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  12521735 gagagtttacctcaactcattttgccaaggtaaactcgattcgagaactcgtgcgagtttacctaaaattaaaatta 12521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 26619984 - 26620040
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  26619984 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 26620040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 27974323 - 27974370
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  27974323 gtaaactcgactcgagaactcgtataagtttacctaaaattaaaatta 27974370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 28031592 - 28031639
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  28031592 gtaaactcgactcgagaactcgtataagtttacctaaaattaaaatta 28031639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 44977529 - 44977438
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||| || || |||| ||||| | |||||||||||| |||||||| ||||||||||||||  ||  ||||||| ||||||||||||||    
T  44977529 aaggttttgcaactcgagagtttacttcaactcgttttgcttaggtaaattcgactcgagaacttctaagagtttacgtaaaattaaaatta 44977438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 24067566 - 24067476
Alignment:
Q  113 ttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttaca 202  Q
    ||||||||||| ||||||   ||||||||| || |||||||||| || ||||||| |||||||||||||| |||||||||  |||||||||    
T  24067566 ttaccttaactagttttgttcaggtaaacttgattcgagaactcatataagtttatctaaaattaaaattaaataaaatttattatttaca 24067476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 7761256 - 7761208
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaa 184  Q
    |||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  7761256 gtaaactcaactcgagaactcgtacgagtttatctaaaattaaaattaa 7761208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 33177262 - 33177326
Alignment:
Q  152 aactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaaa 215  Q
    ||||||||| |||||||||||||||||||||| ||||||||  |||| |||| ||||||||||||    
T  33177262 aactcgtaccagtttacctaaaattaaaattatataaaatttattatatacatgacatatgtaaa 33177326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 6387259 - 6387314
Alignment:
Q  137 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||    
T  6387259 taaactcgattcgagaattcgtacgagtttacctaaaattaaaattatataaaatt 6387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 19484973 - 19484915
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  19484973 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 19484915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 27869131 - 27869187
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||| |||||||||||||||| || ||||||||||||| |||||||| ||||||||    
T  27869131 gtaaattcgactcgagaactcgaacgagtttacctaaaaataaaattatataaaatt 27869187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 6387200 - 6387257
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactc 148  Q
    |||||||||||| ||  ||| ||||||| |||||||||||| ||||||||||| ||||    
T  6387200 caaggttttacaactcaagagtttacctcaactcgttttgcttaggtaaactccactc 6387257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 4870502 - 4870602
Alignment:
Q  115 accttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgta 213  Q
    |||| ||||| |||| | || ||||||| || |||  ||||||||| ||||||||||||||||| |||| ||||||||  |||| |||  ||||||||||    
T  4870502 acctcaactcattttacttatgtaaacttgaatcgtaaactcgtacgagtttacctaaaattaatattatataaaatttattatatacgtgacatatgta 4870601  T
Q  214 a 214  Q
    |    
T  4870602 a 4870602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 35795650 - 35795618
Alignment:
Q  221 aataaggcttaattgcacttttggccccctatg 253  Q
    ||||||||||||||||| |||||||||||||||    
T  35795650 aataaggcttaattgcagttttggccccctatg 35795618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 45308449 - 45308481
Alignment:
Q  221 aataaggcttaattgcacttttggccccctatg 253  Q
    |||| ||||||||||||||||||||||||||||    
T  45308449 aatatggcttaattgcacttttggccccctatg 45308481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 25050352 - 25050228
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 190  Q
    ||||||||||| || |||| ||||||| ||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||    
T  25050352 aaggttttacaactcgagagtttacctcaactcgttttgcccaagtaaactcgactcgagaactcggacgagtttacctaaaattaatattaaataaaat 25050253  T
Q  191 tagttatttacaagacatatgtaaa 215  Q
    |  ||||||||| ||||||||||||    
T  25050252 ttattatttacatgacatatgtaaa 25050228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 7667520 - 7667403
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 190  Q
    ||||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  7667520 aaggttttacaacttgagagtttacctcaactcgttttgcttaagtaaactcgactcgagaactagtacaagtttacctaaaattaaagttaaataaaat 7667421  T
Q  191 tagttatttacaagacat 208  Q
    |   |||||||| |||||    
T  7667420 ttagtatttacatgacat 7667403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 24064083 - 24063984
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaat 190  Q
    ||||||| ||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||||||    
T  24064083 aaggtttaacaacttaagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtatgagtttacct-aaattaaaattatataaaat 24063985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 53836704 - 53836614
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||| || ||||||| |||||||  |||||||||  |||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  53836704 aaggttttgcaacttgagagtttacctcgactcgttttatctagataaactcgactcgaaaactcgtacgagtttacctaaaattaaaatt 53836614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 43173682 - 43173581
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || || |||| ||||||| ||||||||||   |||||||||||||||||||||||||||  ||||||| |||||||||||||| ||||||    
T  43173682 caaggttttgcaactcgagagtttacctcaactcgttttatttaggtaaactcgactcgagaactcgtatgagtttacataaaattaaaattacataaaa 43173583  T
Q  190 tt 191  Q
    ||    
T  43173582 tt 43173581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 21718099 - 21718201
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaattagttatttacaagacatatg 211  Q
    ||||||||| ||||||||| | | ||||||||  ||||||||||||||| |||||||||||||||||||||||  || ||  ||||||||  ||||||||    
T  21718099 tttaccttagctcgttttgtccacgtaaactcagctcgagaactcgtacgagtttacctaaaattaaaattaaataatttttttatttacttgacatatg 21718198  T
Q  212 taa 214  Q
    |||    
T  21718199 taa 21718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 4962021 - 4962123
Alignment:
Q  88 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ata 186  Q
    |||||||||||| || ||  ||| ||||||| |||| |||| |||||||||||||||||||||||||| | || |||||||||||||||||||||| |||    
T  4962021 aaccaaggttttgcaactctagagtttacctcaacttgttt-gcctaggtaaactcgactcgagaacttg-acgagtttacctaaaattaaaattatata 4962118  T
Q  187 aaatt 191  Q
    |||||    
T  4962119 aaatt 4962123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 7436915 - 7436971
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  7436915 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 7436971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 27163135 - 27163017
Alignment:
Q  93 aggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||||||| ||||||| ||| ||| |||| ||| |   || ||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  27163135 aggttttacaacttgagagtttgcctcaacttgttatatttatgtaaattcgactcgtaaactcgtacaagtttacctaaaattaaaattatataaaatt 27163036  T
Q  192 agttatttacaagacatat 210  Q
      |||| |||| |||||||    
T  27163035 tattatatacatgacatat 27163017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 32766661 - 32766605
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  32766661 gtaaactcgacttgagaactcgtacgagtttacctaaaattaaaattatataaaatt 32766605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 53644751 - 53644839
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| ||||| |||| |||  ||||||||| ||||||||||||||||||    
T  53644751 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaattcgaatcgtaaactcgtacgagtttacctaaaattaaa 53644839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 8599718 - 8599658
Alignment:
Q  89 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  8599718 accaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 8599658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 22488419 - 22488511
Alignment:
Q  95 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcga-----gaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||| || |||| ||||||| |||||||||| ||||| ||||||||||||||      ||||||||| ||||||||||||||| |||||    
T  22488419 gttttacaactcgagagtttacctcaactcgttttacctagttaaactcgactcgaattgtaaactcgtacgagtttacctaaaattgaaatt 22488511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 27988265 - 27988341
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||| ||||||| |||| ||||||  ||| ||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  27988265 gagagtttacctcaacttgttttgtttagataaactcgatttgagaattcgtacgagtttacctaaaattaaaatta 27988341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 33694012 - 33693956
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  33694012 gtaaactcaactcgagaactcgtacgagtttaccaaaaattaaaattatataaaatt 33693956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 49459111 - 49459055
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  49459111 gtaaacttgactcgagaattcgtacgagtttacctaaaattaaaattatataaaatt 49459055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 37833475 - 37833388
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    ||||||||| | || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||||| || |||||||||||||    
T  37833475 aaggttttatagctcgagagtttacctcaactcgttttaactatgtaaactcgaatcgtaaactcgtacaaattaacctaaaattaaa 37833388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 45731406 - 45731315
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    ||||||||| | || |||| ||||||| ||||||||||  ||| |||||||||| | |  ||||||||  ||||||||||||||||||||||    
T  45731406 aaggttttataactcgagagtttacctcaactcgttttagctatgtaaactcgaattgtaaactcgtatgagtttacctaaaattaaaatta 45731315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 47466876 - 47466931
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaatt 191  Q
    |||||||||||| |  ||||||||| |||||||||||||||||||||| |||||||    
T  47466876 gtaaactcgacttgtaaactcgtacgagtttacctaaaattaaaattattaaaatt 47466931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 49296874 - 49296816
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  49296874 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 49296816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 21385823 - 21385876
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtac 160  Q
    |||| ||||||| |||||||||||| ||| ||||||||||||||||||| ||||    
T  21385823 gagagtttacctcaactcgttttgcttagataaactcgactcgagaacttgtac 21385876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 7436859 - 7436915
Alignment:
Q  93 aggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||| || || |||| ||||||| |||||||||||| |||||||||||||||||    
T  7436859 aggttttgcaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcg 7436915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 25932206 - 25932150
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgact 147  Q
    |||||||||||| ||||||| ||||| | ||||||||||| || |||||||||||||    
T  25932206 caaggttttacaacttgagagtttacttcaactcgttttgtctgggtaaactcgact 25932150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 33694070 - 33694012
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||||||||||||||||  | ||||||||||||||    
T  33694070 caaggttttgcaactcgagagtttaccttaactcgttttgctaatgtaaactcgactcg 33694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 253
Target Start/End: Complemental strand, 40989715 - 40989685
Alignment:
Q  223 taaggcttaattgcacttttggccccctatg 253  Q
    |||||||||||||||||||||||||||||||    
T  40989715 taaggcttaattgcacttttggccccctatg 40989685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 49296816 - 49296770
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||||| |||  ||||||||| |||||||||||||||||||||    
T  49296816 gtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaatt 49296770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 9818050 - 9818105
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||  ||||||||| |||| ||||||||||||||||| ||||||||    
T  9818050 gtaaactcgactcgtaaactcgtacgagtt-acctaaaattaaaattatataaaatt 9818105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 17258245 - 17258217
Alignment:
Q  225 aggcttaattgcacttttggccccctatg 253  Q
    |||||||||||||||||||||||||||||    
T  17258245 aggcttaattgcacttttggccccctatg 17258217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 30237957 - 30238033
Alignment:
Q  137 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgt 212  Q
    ||||||||||| |  || | |||| ||||||||||||||||||| || ||||||||  |||| ||||||||||||||    
T  30237957 taaactcgacttgtaaatttgtacgagtttacctaaaattaaaagtatataaaatttattatatacaagacatatgt 30238033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 40988593 - 40988625
Alignment:
Q  221 aataaggcttaattgcacttttggccccctatg 253  Q
    ||||||||||||||||||||||||| |||||||    
T  40988593 aataaggcttaattgcacttttggctccctatg 40988625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 43001940 - 43001912
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  43001940 aaggcttaattgcacttttggccccctat 43001912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 53764573 - 53764601
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  53764573 aaggcttaattgcacttttggccccctat 53764601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 16439482 - 16439379
Alignment:
Q  89 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataa 187  Q
    ||||||||||| || || |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  16439482 accaaggtttttcaactcgagagtttacctcaactcgttttgtctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataa 16439383  T
Q  188 aatt 191  Q
    ||||    
T  16439382 aatt 16439379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 31534419 - 31534520
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || ||||||| ||||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  31534419 caaggttttgcaacttgagagtttacctcaaatcgttttgtctgggtaaactcgactcaagaactcgtacgagtttacctaaaattaaaattatataaaa 31534518  T
Q  190 tt 191  Q
    ||    
T  31534519 tt 31534520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 31975066 - 31975186
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || || |||| ||||||| ||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  31975066 caaggttttgcaactcgagagtttacctcaactcgtttcgcatagataaactcgactcgagaactcgtacgattttacctaaaattaaaattatataaaa 31975165  T
Q  190 ttagttatttacaagacatat 210  Q
    ||  |||| | ||||||||||    
T  31975166 tttattatatgcaagacatat 31975186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 24202893 - 24202799
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaa 184  Q
    ||||||||||| |  | |||| |||| ||||||||||||| ||||||||||||||||| | ||| |||||| |||||||||||||||||||||||    
T  24202893 ccaaggttttataattcgagactttatcttaactcgttttacctaggtaaactcgacttgtgaattcgtacgagtttacctaaaattaaaattaa 24202799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 28042151 - 28042050
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaattagttatttacaagacatatg 211  Q
    ||||||| |||| |||||   ||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||  ||||||||| | ||||||    
T  28042151 tttacctcaacttgttttatttaggtaaactcgactcgagaacttgtacgagtttacctaaaattaaaat--ataaaatttattatttacatgtcatatg 28042054  T
Q  212 taaa 215  Q
    ||||    
T  28042053 taaa 28042050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 32567630 - 32567721
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactc-----gagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttat 197  Q
    ||||||||||||| |||||| ||||||||||||||||     |||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  32567630 tttaccttaactcattttgcttaggtaaactcgactcaactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttgttat 32567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 2607703 - 2607630
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaa 180  Q
    |||||||||| | ||||||||| ||||||||||| |  |||||||||||||||| |||||||||||||||||||    
T  2607703 gagaatttacttcaactcgtttcgcctaggtaaaattaactcgagaactcgtacgagtttacctaaaattaaaa 2607630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 31995709 - 31995765
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||    
T  31995709 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 31995765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 1462728 - 1462786
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  1462728 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 1462786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 6789141 - 6789083
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  6789141 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 6789083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 10110658 - 10110716
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  10110658 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 10110716  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 2173935 - 2173906
Alignment:
Q  224 aaggcttaattgcacttttggccccctatg 253  Q
    ||||||||||||||||||||||||||||||    
T  2173935 aaggcttaattgcacttttggccccctatg 2173906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 4037035 - 4037064
Alignment:
Q  223 taaggcttaattgcacttttggccccctat 252  Q
    ||||||||||||||||||||||||||||||    
T  4037035 taaggcttaattgcacttttggccccctat 4037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 11745992 - 11746024
Alignment:
Q  220 taataaggcttaattgcacttttggccccctat 252  Q
    ||||||||||||||||||||||||| |||||||    
T  11745992 taataaggcttaattgcacttttggacccctat 11746024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 14169033 - 14169005
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  14169033 aaggcttaattgcacttttggccccctat 14169005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 33274230 - 33274258
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  33274230 aaggcttaattgcacttttggccccctat 33274258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 17503227 - 17503336
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 190  Q
    ||||||||||| ||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  17503227 aaggttttacaacttgagagtttacctcaactcattttgcttaggtaaactcgactcgagaactcgtatgagtttacctaaaattaaaattaaataaaat 17503326  T
Q  191 tagttattta 200  Q
    |  |||||||    
T  17503327 ttattattta 17503336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 12755093 - 12754996
Alignment:
Q  95 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||||| || |||| ||||||| |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  12755093 gttttacaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcgagacctcgtacgagtttacctaaaattaaaattatataaaatt 12754996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 29509373 - 29509498
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaa 188  Q
    |||||||||| || || |||| ||||||| ||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||    
T  29509373 ccaaggttttgcaactcgagagtttacctcaactaattttgtctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatattaa 29509472  T
Q  189 attagttatttacaagacatatgtaa 214  Q
    |||  |||| | ||||||||||||||    
T  29509473 atttattatatgcaagacatatgtaa 29509498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 24454353 - 24454223
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaa 189  Q
    |||||||||||   | |||| |||| || |||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  24454353 caaggttttacgattagagagtttagctcaactcgttttgcttagttaaactcgacttgagaactcgtacgagtttatctaaaattaaaattaaataaaa 24454254  T
Q  190 ttagttatttacaagacatatgtaaattact 220  Q
    ||  ||||||||| |||||||||||| ||||    
T  24454253 tttattatttacatgacatatgtaaactact 24454223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 24965804 - 24965894
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaat 181  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  24965804 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgagaactcatacgagtttatctaaaattaaaat 24965894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 33141096 - 33141011
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||| ||||||| || ||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  33141096 gagagtttacctcaattcgttttgtttaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 33141011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 32890665 - 32890573
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    ||||||||| || || |||| ||||||| |||||||||||  ||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  32890665 caaggttttgcaactcgagagtttacctcaactcgttttgtttaggtaaactcgacttgataactcgtacgagtttacctaaaattaaaatta 32890573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 46862254 - 46862349
Alignment:
Q  88 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||||||| || || |||| ||||||| ||||||||||| ||||||||| |||| ||||||||||  || ||||||||||||||||||||||    
T  46862254 aaccaaggttttgcaactcgagagtttacctcaactcgttttgtctaggtaaattcgattcgagaactctgacgagtttacctaaaattaaaatta 46862349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 50517882 - 50517781
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    ||||||||| || || || | ||||||| ||||| ||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||| ||||||    
T  50517882 caaggttttgcaactcgaaagtttacctcaactcattttgcctaggtaaactcgactcgagaactcatatgagtttatctaaaattaaaattatataaaa 50517783  T
Q  190 tt 191  Q
    ||    
T  50517782 tt 50517781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 872236 - 872156
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaa-ttagttatttacaagacatatgtaaa 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||  ||||||||| || |||||||||    
T  872236 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattaaaaaaattttattatttacatgagatatgtaaa 872156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 41469634 - 41469737
Alignment:
Q  89 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataa 187  Q
    ||||| |||||||| || |||| ||||||| ||||||||||  ||| ||||||||||||||  ||||||||  |||||||||||||||||||||| ||||    
T  41469634 accaaagttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgactcgtaaactcgtatgagtttacctaaaattaaaattatataa 41469733  T
Q  188 aatt 191  Q
    ||||    
T  41469734 aatt 41469737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 55166141 - 55166015
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaa 188  Q
    |||||||||||||  || ||| |||| || ||||| ||||| ||||||||||| || | |||||||||||  ||||||| ||||||||||||| ||||||    
T  55166141 ccaaggttttacaattttagagtttatctcaactcattttgtctaggtaaactagatttgagaactcgtatgagtttacttaaaattaaaattaaataaa 55166042  T
Q  189 attagttatttacaagacatatgtaaa 215  Q
    |||  ||||||||| ||||||| ||||    
T  55166041 atttattatttacatgacatatataaa 55166015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 23170114 - 23170216
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaa 188  Q
    |||| |||||||| ||  ||| |||| || |||||||||| | || |||||||||| |||  |||||||||||||||||||||||||||||||| |||||    
T  23170114 ccaaagttttacaactcaagagtttatctcaactcgttttacataagtaaactcgaatcggaaactcgtacaagtttacctaaaattaaaattatataaa 23170213  T
Q  189 att 191  Q
    |||    
T  23170214 att 23170216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 56423416 - 56423502
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaatta 177  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| ||||||||||||||||    
T  56423416 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaatta 56423502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 8562520 - 8562605
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||||||||||||||||||| ||||||||    
T  8562520 gagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 8562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 25014120 - 25014019
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| ||||||| || | |  ||||||||| |||||||||||||||||||||| ||||||    
T  25014120 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaacttgaattgtaaactcgtacgagtttacctaaaattaaaattatataaaa 25014021  T
Q  190 tt 191  Q
    ||    
T  25014020 tt 25014019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 26973106 - 26973009
Alignment:
Q  95 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||||| || |||| ||| ||| |||| ||||||| || ||||| | ||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  26973106 gttttacaactcgagagtttgcctcaacttgttttgcttaagtaaatttgactcgagaactcgtacgagtttaccttaaattaaaattatataaaatt 26973009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 40163405 - 40163317
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||  ||||||||||||||||||    
T  40163405 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtaggagtttacctaaaattaaa 40163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 26490618 - 26490681
Alignment:
Q  120 aactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    ||||||||||   ||||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  26490618 aactcgttttatttaggtaaactcgattcgagaactcatacgagtttacctaaaattaaaatta 26490681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 40487063 - 40487154
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||| ||| ||||||||||    
T  40487063 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttatctataattaaaatt 40487154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 6486757 - 6486841
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaat 175  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| ||   ||||||||| ||||||||||||||    
T  6486757 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcataaactcgtacgagtttacctaaaat 6486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 26449287 - 26449199
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    |||||||||||| || || | ||||||| ||||||||||  ||| ||||||| || |||  ||||||||| ||||||||||||||||||    
T  26449287 caaggttttacaactcgatagtttacctcaactcgttttagctatgtaaacttgaatcgtaaactcgtacgagtttacctaaaattaaa 26449199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 23670917 - 23671008
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||||||| || |||| ||||||| ||||| |||| ||||  |||||||||||||  ||||| ||| |||||||||| |||| |||||    
T  23670917 caaggttttacaactcgagagtttacctcaactcattttacctatataaactcgactcgtaaactcatacgagtttacctagaattgaaatt 23671008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 29469868 - 29469819
Alignment:
Q  133 taggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||||||||||||  ||||||||| ||||||||||||||| |||||    
T  29469868 taggtaaactcgactcgtaaactcgtacgagtttacctaaaattgaaatt 29469819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 4511416 - 4511472
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||| || ||||| |||||| |||||||||||||||||||||| ||||||||    
T  4511416 gtaaactcgtcttgagaaatcgtacgagtttacctaaaattaaaattatataaaatt 4511472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 9973507 - 9973423
Alignment:
Q  95 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    |||||||| ||  ||| ||||||| ||||| ||||  ||| |||||||||||||   ||||||||| ||||||||||||||||||    
T  9973507 gttttacaactcaagattttacctcaactcattttagctatgtaaactcgactcataaactcgtacgagtttacctaaaattaaa 9973423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 54561843 - 54561800
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||    
T  54561843 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaa 54561800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 872273 - 872236
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  872273 tttacctcaactcgttttgtctaggtaaactcgactcg 872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 22480417 - 22480324
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    ||||||||||||| || |||| ||||| | |||||   || |||| ||||| ||||||||  ||||||||  |||||| |||||||||||||||    
T  22480417 ccaaggttttacaactcgagagtttacttcaactctaattacctaagtaaattcgactcgtaaactcgtatcagtttatctaaaattaaaatta 22480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 26858341 - 26858370
Alignment:
Q  223 taaggcttaattgcacttttggccccctat 252  Q
    ||||||||||||||||||||||||||||||    
T  26858341 taaggcttaattgcacttttggccccctat 26858370  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 2016253 - 2016281
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  2016253 aaggcttaattgcacttttggccccctat 2016281  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 29965893 - 29965949
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||| |||||||||  |||| |||| |||||||||||||||||||||| ||||||||    
T  29965893 gtaatctcgactcgtaaactagtacgagtttacctaaaattaaaattatataaaatt 29965949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 53573698 - 53573778
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaaa 215  Q
    ||||||||||||  ||||||||||| |||||||||| || |||||||| ||| ||||  |||| | || ||||||||||||    
T  53573698 gtaaactcgacttaagaactcgtacgagtttacctagaaataaaattatatacaatttattatatgcatgacatatgtaaa 53573778  T

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Target: scaffold0116 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 4922 - 5023
Alignment:
Q  112 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaagacatat 210  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||| | |||||||    
T  4922 tttacctcaactcgttttgcctaagtaaattcgactcgagaactcgtacgagtttacctaaaattaaaattaaataaaatttattatttatatgacatat 5021  T
Q  211 gt 212  Q
    ||    
T  5022 gt 5023  T

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Target: scaffold0024 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 136295 - 136191
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaaga 205  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||  |||| |||| ||    
T  136295 gagaatttacctcaactcattttgcctagataaactcgactcgagaactcgcacgagtttacctaaaattaaaattatataaaatttattatatacatga 136196  T
Q  206 catat 210  Q
    |||||    
T  136195 catat 136191  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 21490369 - 21490250
Alignment:
Q  96 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagt 194  Q
    ||||||| || ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||  |    
T  21490369 ttttacaactcgagaatttaccttaactcgctttgcttaggtaaactcgattcgagaactcgtac-agtttatctaaaattaaaattaaataaaatttat 21490271  T
Q  195 tatttacaagacatatgtaaa 215  Q
    |||||| | ||||||| ||||    
T  21490270 tatttatatgacatatataaa 21490250  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 29759401 - 29759277
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaat 190  Q
    |||||||||||| || || | ||||||| ||||| |||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||  ||||    
T  29759401 caaggttttacaactcgatagtttacctcaactcattttgcttaggtaaactcgactcgagaaatcgtacgagtttatctaaaattaaaattaaataaat 29759302  T
Q  191 tagttatttacaagacatatgtaaa 215  Q
    |  ||||||| | ||||||||||||    
T  29759301 ttattatttaaatgacatatgtaaa 29759277  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 29716216 - 29716306
Alignment:
Q  92 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||| || || |||| ||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||    
T  29716216 aaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagatcccgtacgagtttacctaaaattaaaatt 29716306  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 16548559 - 16548652
Alignment:
Q  123 tcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaagacatatgtaaa 215  Q
    |||||||||| ||||||||| || |||||||||||||| | ||||||||||||||||||| |||||||||  ||||||||| | ||||||||||    
T  16548559 tcgttttgcccaggtaaacttgagtcgagaactcgtacgaatttacctaaaattaaaattaaataaaatttattatttacatggcatatgtaaa 16548652  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 33892262 - 33892363
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 189  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||||||||||||||||||| ||||||    
T  33892262 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaa 33892361  T
Q  190 tt 191  Q
    ||    
T  33892362 tt 33892363  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 35702012 - 35701920
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 183  Q
    |||||||||||| || |||| ||||||| |||||||||| | ||||||||||| |||||  |||| |||| ||||||||||||||||||||||    
T  35702012 caaggttttacaactcgagagtttacctcaactcgttttacttaggtaaactcaactcgtaaacttgtacgagtttacctaaaattaaaatta 35701920  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 5650128 - 5650220
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    ||||||||||||  ||  ||| ||||||| |||||||||| ||||||||||||||||||   ||||||||| ||||||||||||||| |||||    
T  5650128 ccaaggttttactactcaagagtttacctcaactcgttttacctaggtaaactcgactcataaactcgtacgagtttacctaaaattgaaatt 5650220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 31914152 - 31914033
Alignment:
Q  96 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagt 194  Q
    ||||||| || |||| ||||||| |||||||||| |||| |||||||||| ||   ||||||||| ||| |||||||||||||||||| ||||||||  |    
T  31914152 ttttacaactcgagagtttacctcaactcgttttacctatgtaaactcgaatcataaactcgtacgagtatacctaaaattaaaattatataaaatttat 31914053  T
Q  195 tatttacaagacatatgtaa 214  Q
    ||| |||| || ||||||||    
T  31914052 tatatacatgatatatgtaa 31914033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 7124228 - 7124319
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    ||||||||| || || || | ||||||| |||||||||| ||||||||||||||| |||  |||||| || ||||||||||||||| |||||    
T  7124228 caaggttttgcaactcgaaagtttacctcaactcgttttacctaggtaaactcgaatcgtaaactcgcacgagtttacctaaaattgaaatt 7124319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 21238203 - 21238294
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| ||||||| || |||  || |||||| |||||||||||||||||||||    
T  21238203 caaggttttacaactcgagagtttacctcaactcgttttaactatgtaaacttgaatcgtaaaatcgtacgagtttacctaaaattaaaatt 21238294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 34910267 - 34910168
Alignment:
Q  93 aggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||  | |||| ||||||| ||||||||||   || |||||||||| |||  ||||||||| |||||| ||||||||||||||| ||||||||    
T  34910267 aggttttacaattcgagagtttacctcaactcgttttagttatgtaaactcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatt 34910168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 25869400 - 25869344
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    ||||||||||||||  || |||||| |||||||||||||||||||||| ||||||||    
T  25869400 gtaaactcgactcgtaaattcgtacgagtttacctaaaattaaaattatataaaatt 25869344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 3032831 - 3032768
Alignment:
Q  152 aactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaa 214  Q
    ||||||||| |||||||||||||| ||||||| ||||||||  |||| |||| |||||||||||    
T  3032831 aactcgtacgagtttacctaaaatcaaaattatataaaatttattatatacatgacatatgtaa 3032768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 32236946 - 32236989
Alignment:
Q  136 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 179  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||    
T  32236946 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaa 32236989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 40768210 - 40768175
Alignment:
Q  217 tactaataaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||| |||||||    
T  40768210 tactaataaggcttaattgcacttttggacccctat 40768175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 37797459 - 37797517
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||||||| || || |||| ||||||| |||||||||| ||||| |||||||||||||    
T  37797459 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaactcgactcg 37797517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 2674525 - 2674610
Alignment:
Q  107 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||| ||||||| ||||||||||  |||  |||| |||| |||  ||||||||| |||||| ||||||||||||||| ||||||||    
T  2674525 gagagtttacctcaactcgttttagctatataaattcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatt 2674610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 38973326 - 38973355
Alignment:
Q  224 aaggcttaattgcacttttggccccctatg 253  Q
    ||||||||||||||||||||||||||||||    
T  38973326 aaggcttaattgcacttttggccccctatg 38973355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 12610242 - 12610270
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  12610242 aaggcttaattgcacttttggccccctat 12610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 16801314 - 16801262
Alignment:
Q  140 actcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 191  Q
    |||||| ||| |||||||||||||| || ||||||||||||||| ||||||||    
T  16801314 actcgaatcgtgaactcgtacaagtgtatctaaaattaaaattatataaaatt 16801262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 28622506 - 28622566
Alignment:
Q  89 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    ||||| ||||| || || |||| ||||||| ||||||||||  ||||||||||||||||||    
T  28622506 accaaagttttgcaactcgagagtttacctcaactcgttttagctaggtaaactcgactcg 28622566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 38162592 - 38162620
Alignment:
Q  225 aggcttaattgcacttttggccccctatg 253  Q
    |||||||||||||||||||||||||||||    
T  38162592 aggcttaattgcacttttggccccctatg 38162620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 25002 - 25093
Alignment:
Q  91 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 182  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||| ||| ||||||||||    
T  25002 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttatctataattaaaatt 25093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 16136 - 16195
Alignment:
Q  90 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 149  Q
    |||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  16136 ccaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 16195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 20106 - 20135
Alignment:
Q  224 aaggcttaattgcacttttggccccctatg 253  Q
    ||||||||||||||||||||||||||||||    
T  20106 aaggcttaattgcacttttggccccctatg 20135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 122645 - 122617
Alignment:
Q  224 aaggcttaattgcacttttggccccctat 252  Q
    |||||||||||||||||||||||||||||    
T  122645 aaggcttaattgcacttttggccccctat 122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 199665 - 199693
Alignment:
Q  225 aggcttaattgcacttttggccccctatg 253  Q
    |||||||||||||||||||||||||||||    
T  199665 aggcttaattgcacttttggccccctatg 199693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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