View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1883_high_23 (Length: 245)
Name: NF1883_high_23
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_high_23 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 7713462 - 7713696
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |
|
|
| T |
7713462 |
cacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattgaactgcga |
7713561 |
T |
|
| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagca |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7713562 |
aagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaacctcttggaggcgcttcaacttgcccagaaattca |
7713661 |
T |
|
| Q |
211 |
gggattggcccactaaggctgttggagccaaggtc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7713662 |
gggattggcccactaaggctgttggagccaaggtc |
7713696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 7731139 - 7731373
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
7731139 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacattaaactgcga |
7731238 |
T |
|
| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagca |
210 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||| |||||||||||| ||||||||||||||||| ||| || | || |||||||| ||| ||||||| |
|
|
| T |
7731239 |
aagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7731338 |
T |
|
| Q |
211 |
gggattggcccactaaggctgttggagccaaggtc |
245 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
7731339 |
gggatcggcccactaagactgttggaaccaaggtc |
7731373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 7726979 - 7727213
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
7726979 |
cacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacattaaactgcga |
7727078 |
T |
|
| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagca |
210 |
Q |
| |
|
||||||| ||| | ||||| |||||| |||||| |||||||||||| ||||||||||||||||| ||| || | || |||||||| ||| ||||||| |
|
|
| T |
7727079 |
aagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggcctagaaaagtg |
7727178 |
T |
|
| Q |
211 |
gggattggcccactaaggctgttggagccaaggtc |
245 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
7727179 |
gggatcggcccactaagactgttggaaccaaggtc |
7727213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 7699117 - 7699351
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||| |||||| ||||||||| ||| || |||||||| |||||||||||||| ||||| |||| ||| |
|
|
| T |
7699117 |
cacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacattaaactgcga |
7699216 |
T |
|
| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagca |
210 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| | |
|
|
| T |
7699217 |
aagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgcctagaaaggag |
7699316 |
T |
|
| Q |
211 |
gggattggcccactaaggctgttggagccaaggtc |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
7699317 |
gggattggcccactaaggctgttggaaccaaggtc |
7699351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 7739297 - 7739531
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| || |||| || |
|
|
| T |
7739297 |
cacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgttaaactggga |
7739396 |
T |
|
| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagca |
210 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||| |||||| |||||| |||||||||||||||| ||| || | || |||||||| ||| || |||| |
|
|
| T |
7739397 |
aagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggcctaggaaagtg |
7739496 |
T |
|
| Q |
211 |
gggattggcccactaaggctgttggagccaaggtc |
245 |
Q |
| |
|
||||| | ||||||||| |||||||| |||||||| |
|
|
| T |
7739497 |
gggatcgacccactaagactgttggaaccaaggtc |
7739531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 12908357 - 12908131
Alignment:
| Q |
11 |
cacagaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacacagctggttaaagctgacattgaacttcga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||| |||||| |||| ||||| |||| || |
|
|
| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
|
| Q |
111 |
aagagactgtaggttgccgagcgacgccggaatagcaccggataacttgttgttagacaaatcaacctcttggaggcgcttcaacttgcccagaaaagca |
210 |
Q |
| |
|
|||||| ||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||| || || | |
|
|
| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
12908158 |
T |
|
| Q |
211 |
gggattggcccactaaggctgttggag |
237 |
Q |
| |
|
||||| || ||||||||| |||||||| |
|
|
| T |
12908157 |
gggatcgggccactaaggttgttggag |
12908131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University