View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_high_7 (Length: 442)
Name: NF1883_high_7
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 211957 - 211530
Alignment:
| Q |
1 |
aatattgtgaatatagcattccaaaagaaactattaggagtaaacttccattttaatatcaaggttttcagagaatgaattggtggtcatcaaaagattg |
100 |
Q |
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| T |
211957 |
aatattgtgaatatagcattccaaaagaaactattaggagtaaacttccattttaatatcaaggttttcagagaatgaattggtggtcatcaaaagattg |
211858 |
T |
|
| Q |
101 |
ttacattttatatagtcaattgagtcttactatttcaaaagatacaatttattacaaccaaatcgatgtcgtgcaatgttcaaannnnnnnatcaatgga |
200 |
Q |
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| T |
211857 |
ttacattttatatagtcaattgagtcttactatttcaaaagatacaatttattacaaccaaatcgatgtcgtgcaatgttcaaatttttttatcaatgga |
211758 |
T |
|
| Q |
201 |
ttattttgatgtcattagtatatcaatggactactttgatgttctcttaacaattgaagcaaaataaatggagcaaagctgaacccctaaaagataattc |
300 |
Q |
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| T |
211757 |
ttattttgatgtcattagtatatcaatggactactttgatgttctcttaacaattgaagcaaaataaatggagcaaagctgaacccctaaaagataattc |
211658 |
T |
|
| Q |
301 |
ccattatttgcagtttaaatggacgagaagttgagaaccaattacatcatataagaataatgtttttcgcttaaaatatcaatatttttggacacaacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
211657 |
ccattatttgcagtttaaatggacgagaagttgagaaccaattacatcatataagaataatgtttttcgcttaaaatatcaatatttttggacacaacat |
211558 |
T |
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| Q |
401 |
tggttgcatcactgccccatgctattat |
428 |
Q |
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| T |
211557 |
tggttgcatcactgccccatgctattat |
211530 |
T |
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