View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_high_9 (Length: 380)
Name: NF1883_high_9
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 33 - 375
Target Start/End: Original strand, 8467076 - 8467416
Alignment:
| Q |
33 |
gtctccgactgcaaaaaagctgcagttcctttgtattatcaatgaaagattagggtttacagtagtgcacaacttatacttatatactacaattctgatt |
132 |
Q |
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| T |
8467076 |
gtctccgactgtagagaagctgcagttcctttgtattatcaatgaaagattagggtttacagt---gcacaacttatacttaaatactacaattctgatt |
8467172 |
T |
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| Q |
133 |
acaacatcatcccagaaccgtaccccctgtcgccacccgacaacaattctttgggcttgctatgtcgctcttgctctacttgattgaccttgcccactca |
232 |
Q |
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| T |
8467173 |
acaacatcatcccagaaccgtaccccctgtcgccacccgacatcaattctttgggcttggtatgtcactcttgctctacttggttgaccttgcccactca |
8467272 |
T |
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| Q |
233 |
tcatgttatcactaacaatgatccatactcagcaaacgct---nnnnnnntcattgttccgtttactcatttcttggtcttttccctctttgaacttgga |
329 |
Q |
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| T |
8467273 |
tcatgttatcactaacaatgatccatactaagcaaatgctaaaaaaaaaaacattgttc--tttactcatttcttggtcttttccctctttgaacttgga |
8467370 |
T |
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| Q |
330 |
nnnnnnnccttatcaccatcttctgagattttcctcctatgcttct |
375 |
Q |
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| T |
8467371 |
tatttttccttatcgccatcttctgagattttcctcctattcttct |
8467416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 6788099 - 6788040
Alignment:
| Q |
34 |
tctccgactgcaaaaaagctgcagttcctttgtattatcaatgaaagattagggtttaca |
93 |
Q |
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| T |
6788099 |
tctccgactgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttaca |
6788040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 6787920 - 6787875
Alignment:
| Q |
281 |
cattgttccgtttactcatttcttggtcttttccctctttgaactt |
326 |
Q |
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| T |
6787920 |
cattgttcctttgactcatttctcggtctttaccctctttgaactt |
6787875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 28362688 - 28362625
Alignment:
| Q |
32 |
tgtctccgactgcaaaaaagctgcagttcctttgtattatcaatgaaagattagggtttacagt |
95 |
Q |
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|||||| ||||||| | ||||||||||||||||||||||| ||| ||||||||| |||||||| |
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| T |
28362688 |
tgtctcagactgcagagcagctgcagttcctttgtattatcgatggaagattaggatttacagt |
28362625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 35510148 - 35510190
Alignment:
| Q |
51 |
gctgcagttcctttgtattatcaatgaaagattagggtttaca |
93 |
Q |
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| T |
35510148 |
gctgcagttcctttctattatcaatgtaagattagggtttaca |
35510190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 4310024 - 4309990
Alignment:
| Q |
52 |
ctgcagttcctttgtattatcaatgaaagattagg |
86 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
4310024 |
ctgcagttcctttgtatcatcaatgaaagattagg |
4309990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 6683729 - 6683772
Alignment:
| Q |
50 |
agctgcagttcctttgtattatcaatgaaagattagggtttaca |
93 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
6683729 |
agctgcagttcctttgtattatcgattaaagattagggtttaca |
6683772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 25333245 - 25333288
Alignment:
| Q |
52 |
ctgcagttcctttgtattatcaatgaaagattagggtttacagt |
95 |
Q |
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||||||||||||||| |||||| ||||||| ||||||||||||| |
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| T |
25333245 |
ctgcagttcctttgtgttatcactgaaagactagggtttacagt |
25333288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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