View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_low_13 (Length: 327)
Name: NF1883_low_13
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 3237299 - 3237598
Alignment:
| Q |
12 |
atgaataactctttagcttgtgaacaattagttgtgtgaatacacactttgatagttctttttactgtggagtctggacaagtttagaatggaatgatgg |
111 |
Q |
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| T |
3237299 |
atgaataactctttagcttgtgaacaattagttgtgtgaatacacactttgatagttctttttactgtggagtttgtacaagtttagaatggaatgatgg |
3237398 |
T |
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| Q |
112 |
aatactttgttatcatatccaatccaagatttttaactgcttacatagatactttaaatttctgtacatttgctttgcaccttgaaaattcatctcacag |
211 |
Q |
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| T |
3237399 |
aatactttgttatcatatccaatccaagatttttaactgcttacatagatactttaaatttctgtacatttgctttgcaccttgaaaattcatctcacag |
3237498 |
T |
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| Q |
212 |
aagttatgctaggcttgaatgttgaatgagttcttttactgtcaaatagtagttgctcaagaataatgagtcacaatttatagcactttagctcctcttt |
311 |
Q |
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| T |
3237499 |
aagttatgctaggcttgaatgttgaatgagttcttttactgtcaaatagtagttgctcaagaataacgagtcacaatttatagcactttagctcctcttt |
3237598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 39931067 - 39930951
Alignment:
| Q |
160 |
atactttaaatttctgtacatttgctttgcaccttgaaaa-ttcatctcacagaagttatgctaggc-ttgaatgttgaatgagttcttttactgtcaaa |
257 |
Q |
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| T |
39931067 |
atactttaaattcctttacatttgctttccacctggaaaatttcatctaac--aagttatgctaggctttgaaagatgaacgagttc-tttactgtc-aa |
39930972 |
T |
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| Q |
258 |
tagtagttgctcaagaataat |
278 |
Q |
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| T |
39930971 |
tagtaatggctcaagaataat |
39930951 |
T |
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