View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883_low_18 (Length: 293)

Name: NF1883_low_18
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883_low_18
NF1883_low_18
[»] chr2 (12 HSPs)
chr2 (82-262)||(34392080-34392260)
chr2 (81-240)||(23863801-23863958)
chr2 (81-259)||(7381687-7381864)
chr2 (158-259)||(21603954-21604055)
chr2 (81-260)||(37357915-37358098)
chr2 (81-231)||(4779608-4779758)
chr2 (81-254)||(4775634-4775808)
chr2 (81-144)||(21606149-21606212)
chr2 (81-233)||(25275620-25275771)
chr2 (81-223)||(41095784-41095926)
chr2 (100-249)||(14565870-14566019)
chr2 (195-254)||(37811091-37811150)
[»] chr3 (21 HSPs)
chr3 (81-256)||(37742726-37742898)
chr3 (81-259)||(44380249-44380427)
chr3 (158-262)||(50934492-50934596)
chr3 (108-259)||(47426345-47426496)
chr3 (83-250)||(33509684-33509851)
chr3 (180-259)||(32319462-32319541)
chr3 (188-260)||(10179868-10179940)
chr3 (81-254)||(47186175-47186349)
chr3 (85-260)||(35094540-35094717)
chr3 (158-254)||(42664673-42664769)
chr3 (188-260)||(10018671-10018743)
chr3 (158-254)||(31187145-31187241)
chr3 (81-260)||(17466267-17466446)
chr3 (158-254)||(34029366-34029462)
chr3 (102-252)||(39498689-39498838)
chr3 (188-260)||(10123211-10123283)
chr3 (2-74)||(3267093-3267165)
chr3 (81-132)||(19619220-19619271)
chr3 (201-253)||(21963073-21963125)
chr3 (199-239)||(25859037-25859077)
chr3 (2-69)||(53081827-53081895)
[»] chr1 (13 HSPs)
chr1 (81-254)||(2569037-2569209)
chr1 (83-260)||(29119324-29119501)
chr1 (85-259)||(32676131-32676305)
chr1 (105-259)||(8462124-8462277)
chr1 (2-80)||(1606562-1606640)
chr1 (81-260)||(46435463-46435630)
chr1 (158-254)||(8809715-8809811)
chr1 (161-259)||(25161304-25161402)
chr1 (192-257)||(7214520-7214585)
chr1 (81-254)||(35998252-35998426)
chr1 (80-140)||(15387155-15387215)
chr1 (205-253)||(16679821-16679868)
chr1 (82-117)||(36771533-36771568)
[»] chr4 (19 HSPs)
chr4 (81-260)||(12473698-12473877)
chr4 (81-260)||(12528107-12528286)
chr4 (87-256)||(35869575-35869744)
chr4 (81-257)||(22343334-22343510)
chr4 (106-259)||(33249397-33249550)
chr4 (98-260)||(21260788-21260950)
chr4 (81-260)||(51811908-51812087)
chr4 (80-261)||(55590475-55590645)
chr4 (83-253)||(52910050-52910219)
chr4 (158-254)||(52012778-52012874)
chr4 (2-78)||(5657354-5657429)
chr4 (183-259)||(34829183-34829259)
chr4 (158-253)||(49999663-49999758)
chr4 (81-150)||(1796654-1796723)
chr4 (158-254)||(9799438-9799534)
chr4 (195-250)||(49998486-49998541)
chr4 (81-142)||(35781021-35781082)
chr4 (213-259)||(33174513-33174560)
chr4 (183-223)||(1796163-1796203)
[»] chr5 (16 HSPs)
chr5 (80-261)||(11607531-11607712)
chr5 (82-257)||(19357261-19357435)
chr5 (81-249)||(33858536-33858704)
chr5 (81-260)||(1826253-1826432)
chr5 (120-259)||(39570080-39570219)
chr5 (80-238)||(33271630-33271788)
chr5 (81-254)||(38010611-38010785)
chr5 (158-259)||(9827783-9827884)
chr5 (158-262)||(13015373-13015477)
chr5 (159-254)||(13086753-13086848)
chr5 (158-254)||(29989962-29990058)
chr5 (158-254)||(13478120-13478216)
chr5 (105-199)||(42148201-42148295)
chr5 (87-234)||(10292893-10293039)
chr5 (158-253)||(13421085-13421180)
chr5 (81-117)||(9827903-9827939)
[»] chr6 (8 HSPs)
chr6 (81-261)||(1211842-1212022)
chr6 (81-259)||(5403874-5404052)
chr6 (80-259)||(32644835-32645012)
chr6 (189-254)||(11753167-11753232)
chr6 (158-254)||(34245567-34245663)
chr6 (183-253)||(11113557-11113627)
chr6 (81-125)||(10503257-10503301)
chr6 (99-150)||(26526385-26526436)
[»] scaffold0229 (1 HSPs)
scaffold0229 (81-261)||(13003-13184)
[»] chr8 (8 HSPs)
chr8 (81-259)||(24337828-24338006)
chr8 (87-259)||(41179567-41179739)
chr8 (81-258)||(11254026-11254202)
chr8 (104-246)||(4708328-4708470)
chr8 (158-247)||(18168392-18168481)
chr8 (158-247)||(18631949-18632038)
chr8 (158-254)||(1514803-1514899)
chr8 (182-253)||(32825934-32826005)
[»] chr7 (9 HSPs)
chr7 (81-259)||(35341531-35341709)
chr7 (81-259)||(48250149-48250329)
chr7 (80-258)||(48072385-48072561)
chr7 (81-230)||(32694568-32694717)
chr7 (161-250)||(31306951-31307041)
chr7 (99-150)||(40856949-40857000)
chr7 (195-253)||(36776062-36776120)
chr7 (158-259)||(40893116-40893218)
chr7 (190-259)||(40856387-40856456)
[»] scaffold0032 (1 HSPs)
scaffold0032 (80-260)||(34188-34366)
[»] scaffold0519 (1 HSPs)
scaffold0519 (81-258)||(11191-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (205-253)||(23094-23142)
scaffold0263 (158-253)||(23174-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (158-259)||(73066-73168)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 82 - 262
Target Start/End: Original strand, 34392080 - 34392260
Alignment:
Q  82 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 181  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| | ||||||| ||||||||||||||       ||||||||||||||||||  |||     
T  34392080 gatagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaa 34392179  T
Q  182 ataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccgta 262  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtggaatccgta 34392260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 23863801 - 23863958
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||| ||||| ||||||| |||||| |||||| |||||| ||||||||| ||||||||||||||       ||||||||||||||||||  |||    
T  23863801 ggatagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataa 23863900  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 240  Q
      ||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  23863901 agtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 7381864 - 7381687
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||| ||||| |||  |||||||||||||| ||||  |||||| |||||| ||| || |||| |||||       |||||||||||||| |||  |||    
T  7381864 ggatagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataa 7381766  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
      |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  7381765 agtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaatcc 7381687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 21604055 - 21603954
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 257  Q
    ||||||||||||| ||||  |||  |||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaat 21603956  T
Q  258 cc 259  Q
    ||    
T  21603955 cc 21603954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 260
Target Start/End: Original strand, 37357915 - 37358098
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnnta----tatcaaataaagcattg 176  Q
    |||||||||||||||| |||||| |||||||||||||| |||||| |||||| |||||||||||   |||        |    ||| ||||||||||||     
T  37357915 ggatagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt 37358014  T
Q  177 gtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
     |||  |||||||| |||||| |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||    
T  37358015 ataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaatccg 37358098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 4779758 - 4779608
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| |||||| |||||| |||| |||||       |||||||||||||| |||  |||    
T  4779758 ggataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttataa 4779659  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattg 231  Q
      |||||||| |||| |||||||| ||| ||  ||||||||||||| ||||    
T  4779658 agtaacattgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 4775808 - 4775634
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagc-attggta 179  Q
    ||||| || ||||||| ||||||||||||||||||||| |||||| | ||||||| |||||||| |||||       ||||| ||||||| | |||  ||    
T  4775808 ggataacatttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaata 4775709  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    |  ||| |||||||| ||  ||| ||||||||||||||  |||||| |||||||| |||||||||||| ||||||    
T  4775708 aagtaagattggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtgg 4775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 21606212 - 21606149
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcaca 144  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||| |||||| |||||||||||    
T  21606212 ggatagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 25275620 - 25275771
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||||||||| |||| |||||||||||||| |||||| |||||| |||||  ||||||||||| |||||       |||||||||||||| |||  |||    
T  25275620 ggatagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtatt--taa 25275717  T
Q  181 ta-taacattggtaggtggcacactctaattggccaatggtatataccattggt 233  Q
     | |||||||| ||||||||||||  ||||||  |||| ||||| || ||||||    
T  25275718 aagtaacattgataggtggcacacaataattgatcaatcgtataaactattggt 25275771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 41095784 - 41095926
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||  ||| ||||||||||||||||||||  || |||   ||||||| |||||| ||| |||       | ||||||||||||||||  |||    
T  41095784 ggatagcacttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataa 41095883  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtata 223  Q
      ||||||||||||||||  ||||||||||| ||||| |||||    
T  41095884 agtaacattggtaggtggtgcactctaattgaccaattgtata 41095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 249
Target Start/End: Original strand, 14565870 - 14566019
Alignment:
Q  100 taatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggc 199  Q
    ||||| ||||||| |||| ||| ||| ||||||  || ||||||| |||||       |||||||||| ||| | |  ||| |||| ||||||| || ||    
T  14565870 taatgttatatacaattggtcagttaaaatgtgttacatggcacatcctttaaaaaactatatcaaatgaagtacttataaaataatattggtatgtagc 14565969  T
Q  200 acactctaattggccaatggtatataccattggtaccttaatggtacaca 249  Q
    |||||||| |||  ||||| |||||| ||||||||||||| |||||||||    
T  14565970 acactctacttgatcaatgatatataacattggtaccttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 37811150 - 37811091
Alignment:
Q  195 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    |||||||||| | ||||||||||| |||||| |||||||| |  ||||||||||||||||    
T  37811150 gtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtgg 37811091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 37742898 - 37742726
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||       |||||||||||||||||||||||    
T  37742898 ggatagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggtaa 37742799  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 256  Q
    | |||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||   |||||||||||||    
T  37742798 tgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaa---tacacaagtggaa 37742726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 44380427 - 44380249
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||||       ||||||||||||||||||  |||    
T  44380427 ggataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataa 44380328  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
      ||| |||| |||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  44380327 agtaatattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtggaatcc 44380249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 50934596 - 50934492
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 257  Q
    |||||||||||| |||||  |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgaaat 50934497  T
Q  258 ccgta 262  Q
    |||||    
T  50934496 ccgta 50934492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 47426496 - 47426345
Alignment:
Q  108 tataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggcacactcta 207  Q
    ||||||||||  |||||| ||||| ||| ||||||||||||||       |||||||||||||||||   |||  |||||||| |||||| |||||||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  208 attggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtggtatcc 47426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 33509851 - 33509684
Alignment:
Q  83 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaata 182  Q
    ||||||||||||||  ||||||||||||| ||||||  ||||| ||||||||| |||||||| |||||       || ||||||||||||||   |||      
T  33509851 atagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaag 33509752  T
Q  183 taacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 250  Q
    ||| |||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  33509751 taatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 32319462 - 32319541
Alignment:
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32319462 atataccatttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtagaatcc 32319541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 10179868 - 10179940
Alignment:
Q  188 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaatccg 10179940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 47186349 - 47186175
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 179  Q
    |||||||||||||||| ||| ||| |||||| ||||   ||||||   ||||||| ||||||||| ||||        |||||||||||||| |||  ||    
T  47186349 ggatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttata 47186250  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    |  ||||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47186249 aagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 260
Target Start/End: Complemental strand, 35094717 - 35094540
Alignment:
Q  85 agcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatata 184  Q
    |||| ||||||| ||||||||||| || |||||| |||||| |||||| |||||| |||| |||||       |||||||||||||  |||  |||  ||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  185 acattggtaggtggcacactcta--attggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
    |||||||||||||||| ||||||  ||| | ||||||||||||||| |||||| ||||||||||  ||||||||||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtactgaagtggaatccg 35094540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||| ||||  ||| |||||||||||| |||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 10018671 - 10018743
Alignment:
Q  188 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaatccg 10018743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||| ||||  |||  ||||||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 17466446 - 17466267
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| || ||||||| | |||||||||||||||||| ||| ||| | ||||  |||||||| |||||||       |||||||| |||| ||||  |||    
T  17466446 ggataacatttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataa 17466347  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
      |||||||| |||||| ||||||||||||| |||||| |||||||||||| ||  | ||| |||||||| |||||||||    
T  17466346 agtaacattgataggtgacacactctaattgaccaatgatatataccattgatatttgaatcgtacacaaatggaatccg 17466267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||| ||||  |||  ||||||| ||| |||||||||||| ||||  ||||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 39498689 - 39498838
Alignment:
Q  102 atggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggcac 201  Q
    ||||||||||| |||| ||||||| |||||| ||||||||||| |||||       ||||| |||||||  |||  ||| ||||||| | |||||| |||    
T  39498689 atggtatatactattgctcaattagaatgtgtcacgtggcacatcctttaaaaat-tatattaaataaaatatttataaaataacatcgataggtgacac 39498787  T
Q  202 actctaattggccaatggtatataccattggtaccttaatggtacacaagt 252  Q
    ||| |||||| |||||  |||||| ||||||||| ||||||||||||||||    
T  39498788 actttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 10123211 - 10123283
Alignment:
Q  188 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
    ||||||||||||||||| | |||| ||| || |||||| ||||| ||| ||||||||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaatccg 10123283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 3267093 - 3267165
Alignment:
Q  2 acacaaatacaacactgtgggtagtttcgacatttcaacgataaaataaggccaattttatcaaaacacaaca 74  Q
    |||||||||||||||  ||| |||||| ||||||||||| ||||| || || ||||||| ||||| |||||||    
T  3267093 acacaaatacaacaccatggatagtttagacatttcaaccataaattaggggcaattttgtcaaatcacaaca 3267165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 19619271 - 19619220
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtg 132  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||| ||||||    
T  19619271 ggatagcacatgtgtaccataatggtatataccattgcccaattaaaatgtg 19619220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 21963073 - 21963125
Alignment:
Q  201 cactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    |||||| ||||| ||||| |||||| ||||| ||||||||||||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtg 21963125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 25859037 - 25859077
Alignment:
Q  199 cacactctaattggccaatggtatataccattggtacctta 239  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  25859037 cacactctaattggccaatgttatataacattggtagctta 25859077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 53081827 - 53081895
Alignment:
Q  2 acacaaatacaacactgtgggtagtttcgacatttcaacgataaaataa-ggccaattttatcaaaaca 69  Q
    |||||||||||||||  |||||||| | |||||||||||  |||||||| || ||||||| ||||||||    
T  53081827 acacaaatacaacaccatgggtagtattgacatttcaacattaaaataaggggcaattttgtcaaaaca 53081895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 2569209 - 2569037
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||||||||||||||| ||||||| ||||   ||||| |||||||||| |||||||||||||       |||||||||||||||||||||||    
T  2569209 ggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaa 2569111  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2569110 tgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 29119324 - 29119501
Alignment:
Q  83 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaata 182  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||| ||||||||| ||||||||||||||       |||||||||||||||||   |||      
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  183 taacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggtatccg 29119501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 32676305 - 32676131
Alignment:
Q  85 agcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatata 184  Q
    |||| |||||||  |||||||||||||||||||| |||||| | ||||||| ||||||||  ||||       ||||||||||||||||||  |||  ||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  185 acattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 32676131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 8462277 - 8462124
Alignment:
Q  105 gtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggcacact 204  Q
    |||||||||||||| |||||| |||||| |||||||||| ||||||       ||||| ||||||| ||||  ||| |||||||||||||||||||||||    
T  8462277 gtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacact 8462178  T
Q  205 ctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
     ||||||  ||||| |||||||||||||||| |||||  ||||||||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtggaatcc 8462124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 1606562 - 1606640
Alignment:
Q  2 acacaaatacaacactgtgggtagtttcgacatttcaacgataaaataaggccaattttatcaaaacacaacatcctct 80  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  1606562 acacaaatacaacactgtggatagtttcgacatttcaacgataaaataaggctaattttgtcaaaacacaacctcctct 1606640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 260
Target Start/End: Original strand, 46435463 - 46435630
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||| ||||||||| ||||||||||||||||||||  |||||| |||||| || ||| ||||||||||       |||||||||||||||||          
T  46435463 ggataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatc----- 46435557  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
    |||||       ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  46435558 tataa-------aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtggtatccg 46435630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||| ||||  |||  ||||||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 25161402 - 25161304
Alignment:
Q  161 atcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    |||||||||| ||||  |||  |||||||| ||||||||||||| ||||||| ||||||||||||||||||  || |||||||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaatcc 25161304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 7214520 - 7214585
Alignment:
Q  192 taggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 257  Q
    |||||| ||||||||||||| |||||  ||||||| ||| ||||||||||||||||||| ||||||    
T  7214520 taggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaaatggaat 7214585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 254
Target Start/End: Complemental strand, 35998426 - 35998252
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 179  Q
    ||||||||| |||||| ||| ||| |||||| ||||   ||||||  |||||||| ||||||||| ||||        ||||| ||||||| || |  ||    
T  35998426 ggatagcacctgtgtaccattatgttatataacattagccaattaagatgtgccatgtggcacacactttaaaaaacatatataaaataaaacacttata 35998327  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    | ||||||||| || |||||||||||| |||   ||||| |||||| ||||||||||||||||||| ||||||||    
T  35998326 aaataacattgatatgtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtgg 35998252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 15387155 - 15387215
Alignment:
Q  80 tggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtgg 140  Q
    |||||| ||||| |||| ||||||||||||||  |||||||||||| |||||| |||||||    
T  15387155 tggataacacttatgtaccataatggtatataatattgttcaattaaaatgtgtcacgtgg 15387215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 16679821 - 16679868
Alignment:
Q  205 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16679821 ctaattggc-aatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 36771568 - 36771533
Alignment:
Q  82 gatagcacttgtgtaacataatggtatataccattg 117  Q
    |||||||||||||||| |||||||||||||||||||    
T  36771568 gatagcacttgtgtaatataatggtatataccattg 36771533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 12473877 - 12473698
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| |||||| || ||| ||||||||||       |||||||||||||||||   |||    
T  12473877 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12473778  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtggtatccg 12473698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 12528286 - 12528107
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| |||||| || ||| ||||||||||       |||||||||||||||||   |||    
T  12528286 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12528187  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtggtatccg 12528107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 87 - 256
Target Start/End: Original strand, 35869575 - 35869744
Alignment:
Q  87 cacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataac 186  Q
    ||||||| || |||||||||||||||||||||||||||| |||||| |||||||||||||||||       ||||||||||||| ||||  ||   ||||    
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  187 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 256  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 35869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 22343510 - 22343334
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| ||| |||||| |||||||||||||| ||||||||||||| |||||| || |||||||| |||||       ||||||||||||||||||  |||    
T  22343510 ggatatcacctgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataa 22343411  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 257  Q
      |||||||| ||| || |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  22343410 agtaacattgatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtggaat 22343334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 33249397 - 33249550
Alignment:
Q  106 tatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggcacactc 205  Q
    |||||| ||||| ||||||| | ||||||| ||||||||||||||       ||||||||||||||||||  |||  ||||||||||||||| |||||||    
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  206 taattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtgaaatcc 33249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 21260950 - 21260788
Alignment:
Q  98 cataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtg 197  Q
    |||||||||||||| ||||   |||||| ||||||||| ||||||||||||||       ||||||||||||| ||||  |||  |||||||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 21260851  T
Q  198 gcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
     |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||    
T  21260850 acacactctaattggccaatgatatatatcattggtaccttaatggtatataagtggaatccg 21260788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 51812087 - 51811908
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| ||||||| || ||||||||||||||||||| | |||||| |||||| ||| |||||||||||||       ||||||||| |||  |||  |||    
T  51812087 ggataacacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataa 51811988  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
      |||||||||||||||||| ||||||||||||||||  |||||| | ||| |||||||||||||||| |||||||||||    
T  51811987 agtaacattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtggaatccg 51811908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 55590645 - 55590475
Alignment:
Q  80 tggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 179  Q
    ||||||||||||| ||| ||||||||||||| ||||||  |||||| |||||| ||||||||||| |||||       ||||||||||||||            
T  55590645 tggatagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag-------- 55590554  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccgt 261  Q
       ||||||||||||||| |||||| ||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55590553 ---taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaatccgt 55590475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 52910050 - 52910219
Alignment:
Q  83 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaata 182  Q
    ||||||||| |||| ||| |||||||||||||||| |||||||   |||||||||||||| ||| |||       | ||||||||||||||||  |||      
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  183 taacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||| |||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||| ||||  |||  ||||||||||| |||||||||| | ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 5657354 - 5657429
Alignment:
Q  2 acacaaatacaacactgtgggtagtttcgacatttcaacgataaaataaggccaattttatcaaaacacaacatcct 78  Q
    |||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  5657354 acacaaatacaacacca-gggtagtttcgacatttcaacaataaaataaggccaattttgtcaaaacacaacctcct 5657429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 34829183 - 34829259
Alignment:
Q  183 taacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    ||||||||||||||| |||||| |||||||||| || |||||| ||||||||||||||| ||||| ||||| |||||    
T  34829183 taacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtgaaatcc 34829259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||||||||||||||||||  ||| |||||||||||| ||| ||||||||||||| ||||||  | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 1796723 - 1796654
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacacccttt 150  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| | ||||||||||| |||| |||||    
T  1796723 ggataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||| ||||||| ||||  |||  ||||||||||| |||||||| |||  |||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  195 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 250  Q
    ||||||||| |||||||||||||| ||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 35781082 - 35781021
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggca 142  Q
    ||||| |||||| ||| ||||||||||||||||||||  |||||| ||||||||||||||||    
T  35781082 ggatatcacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 33174560 - 33174513
Alignment:
Q  213 ccaatggtatataccattggta-ccttaatggtacacaagtggaatcc 259  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||    
T  33174560 ccaatggtatatactcttggtaaccttaatggtacacaagtggaatcc 33174513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 1796203 - 1796163
Alignment:
Q  183 taacattggtaggtggcacactctaattggccaatggtata 223  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  1796203 taacattgataggtggcacaatataattggccaatggtata 1796163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 80 - 261
Target Start/End: Original strand, 11607531 - 11607712
Alignment:
Q  80 tggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 179  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||| |||||| | |||||||||||||||       ||||||||||||| ||||  ||    
T  11607531 tggatagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttata 11607630  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccgt 261  Q
    |  ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  11607631 aagtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaatccgt 11607712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 19357261 - 19357435
Alignment:
Q  82 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 181  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| |||||| ||||||| ||| |||||       ||||||||||||||||||  |||     
T  19357261 gatagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaa 19357359  T
Q  182 ataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 257  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtggaat 19357435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 81 - 249
Target Start/End: Original strand, 33858536 - 33858704
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| |||||| |||||||||||||||||       ||||||||||||| ||||  |||    
T  33858536 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 33858635  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacaca 249  Q
      |||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 1826432 - 1826253
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| |||||||||| ||||||| |||||| ||||||||||||| ||||||||| ||||||||  ||||       |||||||||||||||||    ||    
T  1826432 ggatatcacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctacaa 1826333  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
      ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  1826332 agtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggtatccg 1826253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 39570080 - 39570219
Alignment:
Q  120 caattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatgg 219  Q
    |||||| ||| || || ||||||||||||||       ||||||||||||| ||||  |||  ||||||||||||||| |||||||||||||||||||||    
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  220 tatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    |||||||||||| ||| |||||| ||||||||||||||||    
T  39570180 tatataccattgatactttaatgatacacaagtggaatcc 39570219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 33271788 - 33271630
Alignment:
Q  80 tggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 179  Q
    |||||||||||| |||| ||||||||||||||| ||||  |||||| ||||||||||||||| || |||||       ||||||||||||||||||  |     
T  33271788 tggatagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatc 33271689  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtacctt 238  Q
    |  |||||||| ||| || |||||||||||||||||||| |||||| ||||||||||||    
T  33271688 aagtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 38010611 - 38010785
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 179  Q
    |||||||||||||||| ||| ||| |||||| ||||   ||||||   ||||||| ||||||||| ||||        |||||||||||||| |||  ||    
T  38010611 ggatagcacttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttata 38010710  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    |  ||||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  38010711 aagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 9827884 - 9827783
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 257  Q
    |||||||||||||  |||  |||  ||| |||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaat 9827785  T
Q  258 cc 259  Q
    ||    
T  9827784 cc 9827783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 13015477 - 13015373
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaat 257  Q
    |||||||||||||  |||  |||  ||||||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||| ||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtggtat 13015378  T
Q  258 ccgta 262  Q
    |||||    
T  13015377 ccgta 13015373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 13086848 - 13086753
Alignment:
Q  159 atatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||  |||  ||| |||||||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13086848 atatcaaataaaatatttataaaataacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||| ||||  |||  ||||||||||| |||||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    |||||||||||||  |||  |||  ||||| ||||| |||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 42148295 - 42148201
Alignment:
Q  105 gtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggc 199  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||       ||||||||||||| ||||  |||  |||||||||||||||||    
T  42148295 gtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 234
Target Start/End: Complemental strand, 10293039 - 10292893
Alignment:
Q  87 cacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataac 186  Q
    |||||||||| ||||||| |||||| |||||  ||||||   ||||||||||||||||||||||        |||||||||||| || |   || |||||    
T  10293039 cacttgtgtaccataatgttatataacattggccaattaaggtgtgccacgtggcacaccctttaaaaaaa-atatcaaataaaacacttacaaaataac 10292941  T
Q  187 attggtaggtggcacactctaattggccaatggtatataccattggta 234  Q
    ||| ||| |||||||| ||| ||||||||||| |||||| ||||||||    
T  10292940 attagtacgtggcacattcttattggccaatgttatataacattggta 10292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 13421085 - 13421180
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||||| ||||||||||||  |||  |||||||| ||  ||  ||||||| ||||  ||||| |||||| ||||| |||||||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 9827939 - 9827903
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattg 117  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9827939 ggataacacttgtgtaccataatggtatataccattg 9827903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 81 - 261
Target Start/End: Original strand, 1211842 - 1212022
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| |||||||||| ||||||||||||||||||||  | |||| ||||||||||||||||||||||||       ||||||||||||||||| | |||    
T  1211842 ggatatcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataa 1211941  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccgt 261  Q
      ||||||||  ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1211942 agtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtgaaatccgt 1212022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 259
Target Start/End: Original strand, 5403874 - 5404052
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||| || |||  || ||||||       ||||||||||||| |||   |||    
T  5403874 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataa 5403973  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
      |||||||||||||||||| ||||||| || |||||  ||||||||||| ||||||||||||||||||||||| ||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtggtatcc 5404052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 259
Target Start/End: Original strand, 32644835 - 32645012
Alignment:
Q  80 tggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 179  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | |||  || ||||||||||||||       |||| ||||||||| |||  ||    
T  32644835 tggatagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtatt-tta 32644932  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    |  ||||||| ||||||| |||||  ||||||||||||| ||||||| || | || |||||||||||||| |||||||||    
T  32644933 aagtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtggaatcc 32645012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 11753232 - 11753167
Alignment:
Q  189 tggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtgg 11753167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    |||||||||||||| |||  |||  ||||||||||| |||||||||| | ||||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 11113627 - 11113557
Alignment:
Q  183 taacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||||||| ||| ||| |||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||    
T  11113627 taacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 10503257 - 10503301
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaatta 125  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  10503257 ggatagcacttgtgtaccataatggtatataccattgtccaatta 10503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 26526385 - 26526436
Alignment:
Q  99 ataatggtatataccattgttcaattataatgtgccacgtggcacacccttt 150  Q
    |||||||||| ||| |||||||||||| |||||| |||||| ||||||||||    
T  26526385 ataatggtatctactattgttcaattagaatgtgtcacgtgacacacccttt 26526436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 81 - 261
Target Start/End: Original strand, 13003 - 13184
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcaca-ccctttnnnnnnntatatcaaataaagcattggta 179  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| |||||||||||||||||| ||||||       ||||||||||||||||| | ||    
T  13003 ggatagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgata 13102  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccgt 261  Q
    |  ||||||||  ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13103 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtgaaatccgt 13184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 81 - 259
Target Start/End: Original strand, 24337828 - 24338006
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||| | ||||||||||||||       |||||||||||||||||   |||    
T  24337828 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctataa 24337927  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
      |||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| ||||    
T  24337928 agtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtggtatcc 24338006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 259
Target Start/End: Original strand, 41179567 - 41179739
Alignment:
Q  87 cacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataac 186  Q
    |||||||||| ||||||||||||||||||||  |||||| ||||||||| |||||||| || ||       ||||| ||||||| ||||  |||  ||||    
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  187 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    || |||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtggaatcc 41179739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 258
Target Start/End: Original strand, 11254026 - 11254202
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| |||||| |||||||||||||||||       ||||||||||||| ||||  |||    
T  11254026 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11254125  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatc 258  Q
      |||||||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||||    
T  11254126 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaatc 11254202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 4708328 - 4708470
Alignment:
Q  104 ggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatataacattggtaggtggcacac 203  Q
    |||| |||||||||   ||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||  ||||||||||||||| |||||    
T  4708328 ggtaaataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacac 4708427  T
Q  204 tctaattggccaatggtatataccattggtaccttaatggtac 246  Q
    | ||||||||  ||| ||||| |||||||||||||| ||||||    
T  4708428 tttaattggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 18168481 - 18168392
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 247  Q
    |||||||||||||| |||  |||  ||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18168481 tatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 18632038 - 18631949
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 247  Q
    |||||||||||||| |||  |||  ||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18632038 tatatcaaataaagtatttataaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 254  Q
    ||||||||||||| ||||  |||  ||||||||||| |||| ||||||| ||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 32825934 - 32826005
Alignment:
Q  182 ataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||||||||| || ||| || |||||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  32825934 ataacattgatatgtgacatactctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 35341709 - 35341531
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||| ||||| | || ||||||| |||||| |||||| |||||| |||||| |||||||||||||||||       ||||||||||||| ||||  |||    
T  35341709 ggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 35341610  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
      |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  35341609 agtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtggaatcc 35341531  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 81 - 259
Target Start/End: Complemental strand, 48250329 - 48250149
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtg--gcacaccctttnnnnnnntatatcaaataaagcattggt 178  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||| ||  ||| |||||||        ||||||||||||||||   |    
T  48250329 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctat 48250230  T
Q  179 aatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    ||  ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||    
T  48250229 aaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtggtatcc 48250149  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 48072561 - 48072385
Alignment:
Q  80 tggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 179  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||       || ||||||||||  |||  ||    
T  48072561 tggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttata 48072462  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatc 258  Q
    | |||||||||  | |||||||||||||||||  ||||||  ||||| |||||||||||||| ||||||||||||||||    
T  48072461 aaataacattgaaatgtggcacactctaattgatcaatgg--tatactattggtaccttaatagtacacaagtggaatc 48072385  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 32694568 - 32694717
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    ||||||||||||||||  |||||||||||||||||||   ||||| |||||| |||||||||||||||||       |||||||||||||| |||  |||    
T  32694568 ggatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataa 32694667  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccatt 230  Q
      |||||||| ||| ||| |||||||||||  ||||||||||||| ||||    
T  32694668 agtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  161 atcaaataaagcattggtaatataacattggtaggtggcacactct-aattggccaatggtatataccattggtaccttaatggtacacaa 250  Q
    |||||||||||||||  |||  |||||||||||||| ||||||| | |||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  99 ataatggtatataccattgttcaattataatgtgccacgtggcacacccttt 150  Q
    ||||||||||||| |||||| |||||| |||||| || ||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 36776062 - 36776120
Alignment:
Q  195 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||||||||||||||||  |||||| |||||| ||  |||||||||||||||| ||||||    
T  36776062 gtggcacactctaattcaccaatgttatataacagcggtaccttaatggtacgcaagtg 36776120  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 40893116 - 40893218
Alignment:
Q  158 tatatcaaataaa-gcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 256  Q
    ||||||||||||| |||||  |||  |||||||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| |||||||| |    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtggta 40893215  T
Q  257 tcc 259  Q
    |||    
T  40893216 tcc 40893218  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 40856456 - 40856387
Alignment:
Q  190 ggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatcc 259  Q
    |||||||| |||||||||||||  ||||  |||||| |||| ||||||||||| |||| |||||| ||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtggtatcc 40856387  T

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Target: scaffold0032 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 34366 - 34188
Alignment:
Q  80 tggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 179  Q
    ||||||||| ||||||| ||||| |||||||| |||| | |||||| |||||| |||||| ||||||||||       |||||||||||||  |||  ||    
T  34366 tggatagcatttgtgtaccataa-ggtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttata 34269  T
Q  180 atataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatccg 260  Q
    |  ||| ||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  34268 aagtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaatccg 34188  T

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Target: scaffold0519 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 258
Target Start/End: Complemental strand, 11367 - 11191
Alignment:
Q  81 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgccacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 180  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| |||||| |||||||||||||||||       ||||||||||||| ||||  |||    
T  11367 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11268  T
Q  181 tataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaatc 258  Q
      |||||||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||||    
T  11267 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaatc 11191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 23142 - 23094
Alignment:
Q  205 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23142 ctaattggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  158 tatatcaaataaagcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 253  Q
    |||||||||||||  |||  |||  ||| |||||||||||||||||||||||||||||||| ||||      | ||||||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 73168 - 73066
Alignment:
Q  158 tatatcaaataaa-gcattggtaatataacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 256  Q
    ||||||||||||| |||||  |||  |||||||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| |||||||| |    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtggta 73069  T
Q  257 tcc 259  Q
    |||    
T  73068 tcc 73066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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