View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883_low_2 (Length: 734)

Name: NF1883_low_2
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883_low_2
NF1883_low_2
[»] chr7 (30 HSPs)
chr7 (16-374)||(21786332-21786683)
chr7 (492-716)||(21785990-21786214)
chr7 (488-651)||(21714730-21714893)
chr7 (54-271)||(21772872-21773102)
chr7 (55-270)||(21682680-21682914)
chr7 (53-271)||(21716734-21716965)
chr7 (53-267)||(21726756-21726990)
chr7 (502-650)||(21788774-21788922)
chr7 (488-582)||(21772551-21772645)
chr7 (516-707)||(21647338-21647538)
chr7 (488-584)||(21726432-21726528)
chr7 (184-267)||(21727263-21727347)
chr7 (516-647)||(15714168-15714305)
chr7 (502-610)||(21664683-21664791)
chr7 (57-180)||(21710818-21710940)
chr7 (503-609)||(21705199-21705305)
chr7 (53-180)||(21727549-21727668)
chr7 (653-714)||(21623779-21623840)
chr7 (518-617)||(21764601-21764703)
chr7 (502-618)||(21792549-21792665)
chr7 (53-180)||(21624031-21624156)
chr7 (488-559)||(21682241-21682312)
chr7 (502-617)||(21629534-21629655)
chr7 (502-617)||(21652732-21652853)
chr7 (606-651)||(21772508-21772553)
chr7 (54-115)||(21647716-21647776)
chr7 (536-613)||(21807657-21807734)
chr7 (53-88)||(15714743-15714778)
chr7 (517-618)||(21657010-21657114)
chr7 (497-617)||(21746077-21746200)
[»] scaffold0182 (1 HSPs)
scaffold0182 (588-651)||(25905-25968)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 21786683 - 21786332
Alignment:
Q  16 cttttcatctgaactcttctgactccaattatctttgttaatctatgttttaaacagaaat--ggattggatcataacaataaaatttcaaaaattcatt 113  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||    
T  21786683 cttttcatctgaactcttctgactccaactctctttgttaatctatgttttaaacagacatatggattggatcataacaataaaatttcaataattcatt 21786584  T
Q  114 tctcttgcagtaataaaatatcacattttgcaaagaaaaaacattttaaaacaattgttactttatcactattattttatttagtttaaccctctaatca 213  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||| ||||||||||    
T  21786583 tctcttgcagtaataaaatatcacattttgcaaagaaaaaatattttaaaacaattgttactttatcactatt--------tagtttaatcctctaatca 21786492  T
Q  214 ctattatgcacacccctctccaatcactatcctccaccttgtaattaaaatatggaaagtacgcactaagggcacctgttagtataccacaaatagaaat 313  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||    
T  21786491 ctattatgcacacccctctctaatcactatc-tccactttgtaattaaaatatggaaagtacaaactaagggcacatgttagtataccacaaatataaat 21786393  T
Q  314 tatgcttaaactaataaaagttgaaatagtgataattaatgataggtaaacttaaactaat 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21786392 tatgcttaaactaataaaagttgaaatagtgataattaatgataggtaaacttaaactaat 21786332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 492 - 716
Target Start/End: Complemental strand, 21786214 - 21785990
Alignment:
Q  492 aatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtat 591  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21786214 aatatttctgttgtaccttggttgtagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtat 21786115  T
Q  592 tgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctgatggtgtctctgactcattcgttatcaatacactatgttgt 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21786114 tgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctgatggtgtctctgactcattcgttatcaatacgctatgttgt 21786015  T
Q  692 tcttttccttttctgtttggaacta 716  Q
    ||||||||| || ||| ||||||||    
T  21786014 tcttttcctgttttgtctggaacta 21785990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 488 - 651
Target Start/End: Complemental strand, 21714893 - 21714730
Alignment:
Q  488 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttc 587  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21714893 ctctaatatttctgttgtaccttggttgtagatgtaatgaggatgatattacgttgaagatcaagaagatgaaagggtgtctctaactgtgactcatttc 21714794  T
Q  588 gtattgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctga 651  Q
    |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  21714793 gtattgataaactatgctctctttctgcttttctttttggaaccatgtccttcttcttctctga 21714730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 54 - 271
Target Start/End: Complemental strand, 21773102 - 21772872
Alignment:
Q  54 taatctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcatttctcttgcagtaataaaatatcacattttgcaaagaaaaa 153  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||    
T  21773102 taatctatgtttcaaacagaaatggattggatcataacattaaaatttcaaaatttcattcctcttgcagtaataaaatatcatattttgcaaaga-aaa 21773004  T
Q  154 acattttaaaacaattgttactttatc------act--------attatttta-tttagtttaaccctctaatcactattatgcacacccctctccaatc 238  Q
    |||||||||||||||||||| ||||||      |||        ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  21773003 acattttaaaacaattgttattttatcctttatacttagtattaattattttagtttagtttaaccctctaatcactattatgcacacccctctctaatc 21772904  T
Q  239 actatcctccaccttgtaattaaaatatggaaa 271  Q
    ||||| |||||| ||||||||||||||||||||    
T  21772903 actat-ctccactttgtaattaaaatatggaaa 21772872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 55 - 270
Target Start/End: Complemental strand, 21682914 - 21682680
Alignment:
Q  55 aatctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcatttctcttgcagtaataaaatatcacattttgcaaag-aaaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  |||| ||||||||||||| ||||||||| |||| |||||    
T  21682914 aatctatgttttaaacagaaatggattggatcataacaataaaattttaaaatttcattcgtcttacagtaataaaataccacattttgtaaagaaaaaa 21682815  T
Q  154 acattttaaaacaattgttactttatc-------------actattatttta-tttagtttaaccctctaatcactat----tatgcacacccctctcca 235  Q
    | |||||||||||||||||| ||||||             | |||||| ||| |||||||||||||||||||||||||    |||||||||||||||| |    
T  21682814 atattttaaaacaattgttattttatcttttctacgtagtattattatgttattttagtttaaccctctaatcactattatatatgcacacccctctcta 21682715  T
Q  236 atcactatcctccaccttgtaattaaaatatggaa 270  Q
    ||| ||||||||||| |||||||||||||||||||    
T  21682714 atccctatcctccactttgtaattaaaatatggaa 21682680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 53 - 271
Target Start/End: Complemental strand, 21716965 - 21716734
Alignment:
Q  53 ttaatctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcatttctcttgcagtaataaaatatcacattttgcaaagaaaa 152  Q
    ||||||||||||| ||||||||| | |||||||||||||| ||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||| ||    
T  21716965 ttaatctatgtttcaaacagaaacgaattggatcataacattaaaatttcaaaatttcattcctcgtgcaataataaaatatcacattttgcaaaga-aa 21716867  T
Q  153 aacattttaaaacaattgttactttatc------act--------attatttta-tttagtttaaccctctaatcactattatgcacacccctctccaat 237  Q
    |||||||||||||| |||||| || |||      |||        | ||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  21716866 aacattttaaaacagttgttatttcatcctttatacttagtattaaatattttagtttagtttaaccctctaatcactattatgcacacccctctctaat 21716767  T
Q  238 cactatcctccaccttgtaattaaaatatggaaa 271  Q
    |||||| |||||| ||||||||||||||||||||    
T  21716766 cactat-ctccactttgtaattaaaatatggaaa 21716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 53 - 267
Target Start/End: Complemental strand, 21726990 - 21726756
Alignment:
Q  53 ttaatctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcatttctcttgcagtaataaaatatcacattttgcaaagaa-a 151  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||  |||| ||||||||||||| |||||||||||||||| |    
T  21726990 ttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaataccacattttgcaaagaaaa 21726891  T
Q  152 aaacattttaaaacaattgttactttatcact--------------attattttattt-agtttaaccctctaatcactat----tatgcacacccctct 232  Q
    ||| | |||||||||||||||| ||||||  |              |||||||||||| ||||||||||||||||||||||    |||||||||||||||    
T  21726890 aaataatttaaaacaattgttattttatcttttctacgtagtattaattattttatttcagtttaaccctctaatcactattatatatgcacacccctct 21726791  T
Q  233 ccaatcactatcctccaccttgtaattaaaatatg 267  Q
    | |||||||||||||||| ||||||||||||||||    
T  21726790 ctaatcactatcctccactttgtaattaaaatatg 21726756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 502 - 650
Target Start/End: Complemental strand, 21788922 - 21788774
Alignment:
Q  502 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaacta 601  Q
    |||||||||||   |||||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||  |||||||| ||||    
T  21788922 ttgtaccttggaattagatgtagtgaggatgattttacgctgaagatcaagaagatgagtgggtgtctctaactgggactcatttgttattgatacacta 21788823  T
Q  602 tgttctccttctccttttctttttggaaccatgtccttctccttctctg 650  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  21788822 tgttctccttctccctttccttttggaaccatgtccttctccttatctg 21788774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 488 - 582
Target Start/End: Complemental strand, 21772645 - 21772551
Alignment:
Q  488 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactc 582  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21772645 ctctaatatttttgttgtaccttggttgtagatgtaatgaggatggtattacgctgaagatcaagaagatgaaagggtgtctctgactgtgactc 21772551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 516 - 707
Target Start/End: Complemental strand, 21647538 - 21647338
Alignment:
Q  516 tagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgta------ttgataaactatgttctcc 609  Q
    |||||| | |||||||||  |||||||||||||||| |||||||  |||||||||| | || |||||| || |||      |||||| ||| ||||||||    
T  21647538 tagatggattgaggatgagtttacgctgaagatcaaaaagatgagtgggtgtctctgattgggactcacttggtaatggtattgatacactgtgttctcc 21647439  T
Q  610 ttctccttttctttttggaaccatgtccttctccttctctgatggtgtctctgactcattcgttatcaatac---actatgttgttcttttccttttctg 706  Q
    ||||||||||| ||||| |||||| ||||||||||||| ||||| ||||||  |||||||||| ||||||||   ||||||||||||||||||||| |||    
T  21647438 ttctccttttccttttgaaaccatttccttctccttctttgatgatgtctccaactcattcgtaatcaatacggtactatgttgttcttttcctttactg 21647339  T
Q  707 t 707  Q
    |    
T  21647338 t 21647338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 488 - 584
Target Start/End: Complemental strand, 21726528 - 21726432
Alignment:
Q  488 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcat 584  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| | |||| |||||||    
T  21726528 ctctaatatttctgttgtaccttggttgtagatgtaatgaggatgatattacgccgacgatcaagaagatgaaagggtgtctttgactgggactcat 21726432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 21727347 - 21727263
Alignment:
Q  184 attattttattt-agtttaaccctctaatcactattatgcacacccctctccaatcactatcctccaccttgtaattaaaatatg 267  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  21727347 attattttattttagtttaaccctctcatcaatattatgcacacccctctctaatcactatcctccactttgtaattaaaatatg 21727263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 516 - 647
Target Start/End: Complemental strand, 15714305 - 15714168
Alignment:
Q  516 tagatgtaatgaggatgatatt-acgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttc------gtattgataaactatgttctc 608  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||      ||||||||| ||||| || ||    
T  15714305 tagatgtaatgaggat-atatttacgctgtagatcaagaagatgagtgggtgtctctgactgtgactcatttcgtaatggtattgatacactatattgtc 15714207  T
Q  609 cttctccttttctttttggaaccatgtccttctccttct 647  Q
    ||||||||||||| |||||||||  || |||||||||||    
T  15714206 cttctccttttctgtttggaaccccgttcttctccttct 15714168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 502 - 610
Target Start/End: Complemental strand, 21664791 - 21664683
Alignment:
Q  502 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaacta 601  Q
    ||||||||||| | |||||  ||||||| |||| |||||| |||||||||||||||||  ||||||||| | ||||||||||||| ||||||||| | ||    
T  21664791 ttgtaccttgggtttagatccaatgagggtgattttacgcagaagatcaagaagatgagtgggtgtctccagctgtgactcatttagtattgatacaata 21664692  T
Q  602 tgttctcct 610  Q
    |||||||||    
T  21664691 tgttctcct 21664683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 21710940 - 21710818
Alignment:
Q  57 tctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcattt-ctcttgcagtaataaaatatcacattttgcaaagaaaaaac 155  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||| ||||| || |||| ||| || ||||||||||||||||||      
T  21710940 tctatgttttaaacagaaatggattggattagaacaataaaattt-aaaaatttatttcctcttacaataat-aaacattacattttgcaaagaaaaatt 21710843  T
Q  156 attttaaaacaattgttactttatc 180  Q
    |||||||||| | ||||| ||||||    
T  21710842 attttaaaactagtgttattttatc 21710818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 503 - 609
Target Start/End: Complemental strand, 21705305 - 21705199
Alignment:
Q  503 tgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaactat 602  Q
    ||||||||||   |||||||  |||||||||| ||||| |||||||||||||||||   |||||| ||| |||||||||||||| ||||||||| |||||    
T  21705305 tgtaccttggaattagatgtggtgaggatgattttacgttgaagatcaagaagatgtgtgggtgtttctgactgtgactcatttggtattgatacactat 21705206  T
Q  603 gttctcc 609  Q
    |||||||    
T  21705205 gttctcc 21705199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 21727668 - 21727549
Alignment:
Q  53 ttaatctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcatttctcttgcagtaataaaatatcacattttgcaaagaaaa 152  Q
    |||||||||||||||||||  || ||||||||||| || ||||||||||||        || ||||| |||||| |||||||||||||||||||| ||||    
T  21727668 ttaatctatgttttaaacaataacggattggatcaaaaaaataaaatttca--------ttcctcttacagtaaaaaaatatcacattttgcaaataaaa 21727577  T
Q  153 aacattttaaaacaattgttactttatc 180  Q
    |  |||||||||||||||||| ||||||    
T  21727576 attattttaaaacaattgttattttatc 21727549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 653 - 714
Target Start/End: Complemental strand, 21623840 - 21623779
Alignment:
Q  653 ggtgtctctgactcattcgttatcaatacactatgttgttcttttccttttctgtttggaac 714  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||    
T  21623840 ggtgtctctgattcattcattattaatacactatgttgttcttttccttttctgtctggaac 21623779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 518 - 617
Target Start/End: Complemental strand, 21764703 - 21764601
Alignment:
Q  518 gatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcat---ttcgtattgataaactatgttctccttctc 614  Q
    |||||| |||||||||  ||| |||||||||| |||||||||  |||||||||| ||||||||||||   ||  |||||||| |||||||||||||||||    
T  21764703 gatgtagtgaggatgactttatgctgaagatctagaagatgagtgggtgtctctgactgtgactcatttgttattattgatacactatgttctccttctc 21764604  T
Q  615 ctt 617  Q
    |||    
T  21764603 ctt 21764601  T

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Target: chr7; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 618
Target Start/End: Complemental strand, 21792665 - 21792549
Alignment:
Q  502 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaacta 601  Q
    |||||||||||   |||||| | ||||||| || ||||| || |||||||||||||||  ||||| ||||||| ||||||||| | | ||||||| ||||    
T  21792665 ttgtaccttggaattagatgcagtgaggatcattttacgatgcagatcaagaagatgattgggtggctctaacagtgactcatctggcattgatacacta 21792566  T
Q  602 tgttctccttctccttt 618  Q
    |||| ||||||||||||    
T  21792565 tgttgtccttctccttt 21792549  T

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Target: chr7; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 21624156 - 21624031
Alignment:
Q  53 ttaatctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcatttctcttgcagtaataaaatatcacattttgcaaagaaaa 152  Q
    |||||||||  ||||| | ||||| ||||||||||||||||||||||||||||| ||  || ||||| || |||| |||||| ||||||||||||  |||    
T  21624156 ttaatctataatttaatcggaaatagattggatcataacaataaaatttcaaaatttatttcctcttacaataat-aaatattacattttgcaaa-taaa 21624059  T
Q  153 aacattttaaaacaattgttactttatc 180  Q
    || |||||||||| | ||||| ||||||    
T  21624058 aatattttaaaactagtgttattttatc 21624031  T

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Target: chr7; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 488 - 559
Target Start/End: Complemental strand, 21682312 - 21682241
Alignment:
Q  488 ctctaatatttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatga 559  Q
    |||||| |||| | || |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  21682312 ctctaagatttctattataccttgggtgtagatttaatgaggatgatattacgctgaagatcaagaagatga 21682241  T

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Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 617
Target Start/End: Complemental strand, 21629655 - 21629534
Alignment:
Q  502 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatt------tcgtattgat 595  Q
    |||||||||||   |||||||| |||||||||  || || ||||||||||||||||||   ||| |||||||||||||||||||      | ||||||||    
T  21629655 ttgtaccttggaattagatgtagtgaggatgactttgcgttgaagatcaagaagatgagttggtttctctaactgtgactcatttggtactggtattgat 21629556  T
Q  596 aaactatgttctccttctcctt 617  Q
      ||||||||||||||||||||    
T  21629555 gcactatgttctccttctcctt 21629534  T

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Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 617
Target Start/End: Complemental strand, 21652853 - 21652732
Alignment:
Q  502 ttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcattt------cgtattgat 595  Q
    |||||||||||   |||||||| | |||||||| ||| || |||||||||||||||||  |||||||| | ||||||||||||||       |||| |||    
T  21652853 ttgtaccttggaattagatgtagttaggatgattttatgcagaagatcaagaagatgagtgggtgtctttgactgtgactcatttggttaaggtatcgat 21652754  T
Q  596 aaactatgttctccttctcctt 617  Q
    | ||||||||||||||||||||    
T  21652753 acactatgttctccttctcctt 21652732  T

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Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 651
Target Start/End: Complemental strand, 21772553 - 21772508
Alignment:
Q  606 ctccttctccttttctttttggaaccatgtccttctccttctctga 651  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||    
T  21772553 ctccttctccttttctttttggaaccatgtccttcttcttccctga 21772508  T

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Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 21647776 - 21647716
Alignment:
Q  54 taatctatgttttaaacagaaatggattggatcataacaataaaatttcaaaaattcatttc 115  Q
    ||||||||||||||| |  ||||||||||||||| ||||||||||||| ||||||| |||||    
T  21647776 taatctatgttttaatcgaaaatggattggatcagaacaataaaattt-aaaaattgatttc 21647716  T

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Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 21807657 - 21807734
Alignment:
Q  536 ttacgctgaagatcaagaagatgaaagggtgtctctaactgtgactcatttcgtattgataaactatgttctccttct 613  Q
    |||||||||| |||||||||||||   ||||||||| ||||  ||||||||  |||||||| |||||||||| |||||    
T  21807657 ttacgctgaacatcaagaagatgagttggtgtctctgactgccactcatttgttattgatacactatgttcttcttct 21807734  T

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Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 15714778 - 15714743
Alignment:
Q  53 ttaatctatgttttaaacagaaatggattggatcat 88  Q
    |||||||||||||||| |||||||||||||||||||    
T  15714778 ttaatctatgttttaatcagaaatggattggatcat 15714743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 618
Target Start/End: Complemental strand, 21657114 - 21657010
Alignment:
Q  517 agatgtaatgaggatgatattacgctgaagatcaagaagatgaaaggg---tgtctctaactgtgactcatttcgtattgataaactatgttctccttct 613  Q
    ||||||| |||||||||  || || ||||||||||||||||||  |||   ||||||| | |||||||||| |  |||||||  |||||||||||| |||    
T  21657114 agatgtagtgaggatgagtttccgttgaagatcaagaagatgagtgggtattgtctctgattgtgactcatctgctattgatgcactatgttctccatct 21657015  T
Q  614 ccttt 618  Q
    |||||    
T  21657014 ccttt 21657010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 617
Target Start/End: Complemental strand, 21746200 - 21746077
Alignment:
Q  497 ttgtgttgtaccttggttatagatgtaatgaggatgatattacgctgaagatcaagaagatgaaagggt---gtctctaactgtgactcatttcgtattg 593  Q
    |||| |||||||||||   | |||||| ||||| |||  ||| || |||||||||||||||||  ||||   |||||| | ||||||||||||  |||||    
T  21746200 ttgtattgtaccttggacttggatgtagtgaggttgagtttatgcagaagatcaagaagatgagtgggtattgtctctgaatgtgactcatttgttattg 21746101  T
Q  594 ataaactatgttctccttctcctt 617  Q
    ||| | ||||||||||| ||||||    
T  21746100 atacattatgttctcctcctcctt 21746077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 651
Target Start/End: Complemental strand, 25968 - 25905
Alignment:
Q  588 gtattgataaactatgttctccttctccttttctttttggaaccatgtccttctccttctctga 651  Q
    ||||||||| ||||| |||||||||||| ||| | |||||| ||||||||||||||||||||||    
T  25968 gtattgatacactatattctccttctccgtttttctttggacccatgtccttctccttctctga 25905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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