View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883_low_22 (Length: 265)

Name: NF1883_low_22
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883_low_22
NF1883_low_22
[»] chr1 (42 HSPs)
chr1 (1-240)||(28460605-28460855)
chr1 (9-82)||(12443441-12443513)
chr1 (37-81)||(7918219-7918263)
chr1 (39-83)||(40181876-40181920)
chr1 (37-80)||(1864888-1864931)
chr1 (39-81)||(14332652-14332694)
chr1 (36-78)||(25098562-25098604)
chr1 (37-83)||(34712391-34712437)
chr1 (24-82)||(36878467-36878525)
chr1 (37-82)||(6427356-6427401)
chr1 (38-83)||(19324567-19324612)
chr1 (30-83)||(19562622-19562675)
chr1 (37-78)||(25361896-25361937)
chr1 (44-97)||(37055871-37055924)
chr1 (37-82)||(38503326-38503371)
chr1 (37-78)||(44482240-44482281)
chr1 (37-81)||(10233260-10233304)
chr1 (8-83)||(25452129-25452202)
chr1 (24-83)||(13436463-13436522)
chr1 (42-81)||(34298443-34298482)
chr1 (37-80)||(39101190-39101233)
chr1 (24-82)||(9709826-9709884)
chr1 (39-81)||(12713337-12713379)
chr1 (39-81)||(12717428-12717470)
chr1 (44-82)||(31015049-31015087)
chr1 (24-82)||(39953141-39953199)
chr1 (37-87)||(49872838-49872888)
chr1 (37-82)||(398773-398818)
chr1 (37-82)||(1486717-1486762)
chr1 (41-82)||(16927197-16927238)
chr1 (37-82)||(17831539-17831584)
chr1 (37-82)||(20157358-20157403)
chr1 (37-82)||(27471574-27471619)
chr1 (37-82)||(34371720-34371764)
chr1 (37-82)||(36906003-36906048)
chr1 (30-82)||(113305-113357)
chr1 (37-81)||(9828051-9828095)
chr1 (37-81)||(10572597-10572641)
chr1 (36-80)||(17425100-17425144)
chr1 (37-81)||(35999330-35999374)
chr1 (24-80)||(39130762-39130818)
chr1 (24-80)||(52903257-52903313)
[»] chr6 (39 HSPs)
chr6 (9-83)||(21924915-21924989)
chr6 (12-82)||(7938122-7938192)
chr6 (9-83)||(9025469-9025548)
chr6 (37-83)||(7086800-7086846)
chr6 (24-82)||(7265588-7265646)
chr6 (24-82)||(19040358-19040416)
chr6 (37-81)||(7151419-7151463)
chr6 (40-83)||(7996389-7996432)
chr6 (40-83)||(8022369-8022412)
chr6 (24-83)||(33001284-33001343)
chr6 (37-83)||(26562694-26562740)
chr6 (37-82)||(24832594-24832639)
chr6 (37-82)||(30866152-30866197)
chr6 (24-80)||(5732505-5732561)
chr6 (37-77)||(7112789-7112829)
chr6 (37-77)||(8781316-8781356)
chr6 (43-83)||(8805586-8805626)
chr6 (37-81)||(9195762-9195806)
chr6 (39-83)||(24138431-24138475)
chr6 (37-80)||(9617442-9617485)
chr6 (37-76)||(11591878-11591917)
chr6 (24-82)||(7377985-7378043)
chr6 (9-82)||(9027184-9027262)
chr6 (37-79)||(9629392-9629434)
chr6 (39-77)||(13360382-13360420)
chr6 (37-83)||(13364713-13364759)
chr6 (40-82)||(34073358-34073400)
chr6 (41-82)||(9658885-9658926)
chr6 (37-82)||(10842538-10842583)
chr6 (37-82)||(10888982-10889027)
chr6 (37-82)||(13851742-13851787)
chr6 (43-80)||(31579239-31579276)
chr6 (37-82)||(32511674-32511719)
chr6 (38-82)||(1532246-1532290)
chr6 (39-83)||(7723260-7723304)
chr6 (37-81)||(17302354-17302398)
chr6 (37-81)||(19044471-19044515)
chr6 (37-85)||(21142121-21142169)
chr6 (37-81)||(26178689-26178733)
[»] chr8 (25 HSPs)
chr8 (10-83)||(14731717-14731791)
chr8 (24-83)||(13844591-13844650)
chr8 (24-85)||(3025554-3025615)
chr8 (37-82)||(34897091-34897136)
chr8 (38-82)||(39954288-39954332)
chr8 (37-83)||(12570516-12570562)
chr8 (37-83)||(12606837-12606883)
chr8 (37-83)||(31236585-31236631)
chr8 (37-82)||(24362210-24362255)
chr8 (37-82)||(34222953-34222998)
chr8 (9-81)||(4948659-4948730)
chr8 (41-81)||(14134706-14134746)
chr8 (24-80)||(33405379-33405435)
chr8 (39-82)||(4611540-4611583)
chr8 (37-80)||(4786346-4786389)
chr8 (37-80)||(11803267-11803310)
chr8 (37-80)||(11927094-11927137)
chr8 (37-83)||(27213552-27213598)
chr8 (37-82)||(20785473-20785518)
chr8 (41-81)||(7658470-7658510)
chr8 (39-83)||(12559116-12559160)
chr8 (41-81)||(13203648-13203688)
chr8 (37-81)||(15816137-15816181)
chr8 (37-81)||(20679403-20679447)
chr8 (39-83)||(29776041-29776085)
[»] chr2 (23 HSPs)
chr2 (28-82)||(21616768-21616822)
chr2 (9-82)||(42832256-42832329)
chr2 (37-80)||(30527603-30527646)
chr2 (37-80)||(39279683-39279726)
chr2 (24-82)||(34691800-34691858)
chr2 (24-82)||(34714212-34714270)
chr2 (24-81)||(5367199-5367256)
chr2 (37-82)||(23718032-23718077)
chr2 (37-82)||(24105704-24105749)
chr2 (37-82)||(37411252-37411297)
chr2 (37-82)||(44860326-44860371)
chr2 (43-83)||(21782832-21782872)
chr2 (37-80)||(2415325-2415368)
chr2 (38-81)||(2665897-2665940)
chr2 (39-82)||(28677915-28677958)
chr2 (37-80)||(35449521-35449564)
chr2 (9-81)||(25846748-25846817)
chr2 (37-82)||(18276527-18276572)
chr2 (37-82)||(18889599-18889644)
chr2 (37-82)||(27286300-27286345)
chr2 (37-82)||(31808083-31808128)
chr2 (39-80)||(32199150-32199191)
chr2 (39-80)||(36281693-36281734)
[»] chr4 (27 HSPs)
chr4 (9-80)||(22440581-22440651)
chr4 (37-80)||(5775366-5775409)
chr4 (31-81)||(36635331-36635381)
chr4 (37-91)||(999356-999410)
chr4 (37-83)||(26504307-26504353)
chr4 (39-80)||(903930-903971)
chr4 (28-85)||(9299054-9299110)
chr4 (37-90)||(18576045-18576098)
chr4 (37-82)||(40613456-40613501)
chr4 (42-82)||(8423731-8423771)
chr4 (9-73)||(10499251-10499314)
chr4 (43-83)||(56257938-56257978)
chr4 (23-82)||(33950142-33950201)
chr4 (37-80)||(40742599-40742642)
chr4 (37-83)||(13134455-13134501)
chr4 (37-83)||(15029770-15029816)
chr4 (37-83)||(15659768-15659814)
chr4 (37-82)||(3712517-3712562)
chr4 (40-81)||(7214533-7214574)
chr4 (37-82)||(16189715-16189760)
chr4 (24-81)||(54580018-54580075)
chr4 (39-79)||(9996849-9996889)
chr4 (30-82)||(11596353-11596405)
chr4 (42-90)||(30838208-30838256)
chr4 (39-83)||(35952627-35952671)
chr4 (41-81)||(37698719-37698759)
chr4 (37-89)||(44081585-44081637)
[»] chr7 (31 HSPs)
chr7 (38-80)||(16341504-16341546)
chr7 (37-78)||(5548686-5548727)
chr7 (37-90)||(7328699-7328752)
chr7 (24-83)||(3721098-3721157)
chr7 (37-91)||(17851428-17851482)
chr7 (24-82)||(20549797-20549855)
chr7 (24-82)||(42720885-42720943)
chr7 (37-82)||(32308126-32308171)
chr7 (24-88)||(1401025-1401089)
chr7 (37-81)||(22868049-22868093)
chr7 (43-82)||(2424620-2424659)
chr7 (37-80)||(2425741-2425784)
chr7 (37-80)||(5233637-5233680)
chr7 (37-80)||(15902830-15902873)
chr7 (43-82)||(29787383-29787422)
chr7 (37-75)||(22602718-22602756)
chr7 (40-82)||(27093424-27093466)
chr7 (40-82)||(27184835-27184877)
chr7 (37-82)||(8160422-8160467)
chr7 (37-78)||(9482944-9482985)
chr7 (23-80)||(12278843-12278899)
chr7 (37-82)||(19206056-19206101)
chr7 (37-82)||(19992007-19992052)
chr7 (9-82)||(28155576-28155649)
chr7 (44-85)||(30813815-30813856)
chr7 (37-81)||(5835254-5835298)
chr7 (37-81)||(5956280-5956324)
chr7 (37-81)||(6630920-6630964)
chr7 (43-83)||(12289119-12289159)
chr7 (37-77)||(17307904-17307944)
chr7 (24-80)||(38143231-38143287)
[»] chr5 (23 HSPs)
chr5 (37-83)||(39205885-39205931)
chr5 (37-82)||(6471897-6471942)
chr5 (37-83)||(16203803-16203849)
chr5 (37-83)||(23012416-23012462)
chr5 (24-82)||(30502383-30502441)
chr5 (24-82)||(30542726-30542784)
chr5 (37-83)||(41091265-41091311)
chr5 (37-82)||(3966509-3966554)
chr5 (41-82)||(12927660-12927701)
chr5 (37-82)||(27144469-27144514)
chr5 (40-81)||(35017044-35017085)
chr5 (37-82)||(36838549-36838594)
chr5 (37-81)||(3751938-3751982)
chr5 (39-79)||(26312778-26312818)
chr5 (24-80)||(28588669-28588725)
chr5 (38-77)||(24273039-24273078)
chr5 (38-77)||(24389136-24389175)
chr5 (37-83)||(18421849-18421895)
chr5 (37-82)||(11685945-11685990)
chr5 (37-78)||(14873527-14873568)
chr5 (41-82)||(17593734-17593775)
chr5 (37-82)||(34879356-34879401)
chr5 (21-77)||(15086482-15086538)
[»] chr3 (30 HSPs)
chr3 (37-83)||(11313808-11313854)
chr3 (39-81)||(48353741-48353783)
chr3 (24-82)||(49505149-49505207)
chr3 (25-80)||(4201404-4201459)
chr3 (37-80)||(32804548-32804591)
chr3 (24-82)||(7928456-7928514)
chr3 (24-82)||(8383263-8383321)
chr3 (37-83)||(10455795-10455841)
chr3 (43-85)||(11251981-11252023)
chr3 (31-80)||(2731820-2731869)
chr3 (37-82)||(8039843-8039888)
chr3 (43-83)||(27277852-27277892)
chr3 (37-81)||(29508451-29508495)
chr3 (40-83)||(9624646-9624689)
chr3 (37-80)||(16192758-16192801)
chr3 (24-78)||(8789545-8789599)
chr3 (39-81)||(12704014-12704056)
chr3 (12-70)||(13414487-13414545)
chr3 (11-80)||(10268468-10268537)
chr3 (41-82)||(10690274-10690315)
chr3 (40-81)||(11493372-11493413)
chr3 (37-82)||(11665950-11665995)
chr3 (39-80)||(18180547-18180588)
chr3 (37-82)||(25948895-25948940)
chr3 (37-82)||(34307788-34307833)
chr3 (37-77)||(15314884-15314924)
chr3 (37-81)||(17005627-17005671)
chr3 (24-80)||(20691327-20691383)
chr3 (24-80)||(25093510-25093566)
chr3 (41-81)||(29112292-29112332)
[»] scaffold0020 (1 HSPs)
scaffold0020 (9-83)||(135287-135366)
[»] scaffold0123 (1 HSPs)
scaffold0123 (37-82)||(44533-44578)
[»] scaffold0036 (1 HSPs)
scaffold0036 (37-81)||(9755-9799)
[»] scaffold0022 (1 HSPs)
scaffold0022 (41-80)||(90851-90890)
[»] scaffold0044 (1 HSPs)
scaffold0044 (37-79)||(53189-53231)
[»] scaffold0008 (1 HSPs)
scaffold0008 (37-83)||(263380-263426)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28460855 - 28460605
Alignment:
Q  1 cttttaaaattaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagcaatatcgatatatcaata 100  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  28460855 cttttaaaattaggcgtgtttcggtgtcggacacgtacatatataattacatttaattatttgattttctgaaattattaacaatgtcgatatatcaata 28460756  T
Q  101 ttcgtgttatatttgatatccgtact-----------tcatagttcacgataaatagcagttctgttttttaataccaaccacagtggaagtgtttaacg 189  Q
    | |||||| |||||| |||||||| |           |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28460755 tccgtgttgtatttggtatccgtattcgtatccgtactcatagttaacgacaaatagcagttctgttttttaataccaaccacagtggaagtgtttaacg 28460656  T
Q  190 gtttatttgacatgatgcttatttggagaaaaacctcacattatagatatt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28460655 gtttatttgacatgatgcttatttggagaaaaacctcacattatagatatt 28460605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 12443441 - 12443513
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||| ||||||||||||| ||||||| |||||| ||||||||| |||||| |||||||||||||||||||||    
T  12443441 attaggtgtgtctcggtgtccgacacgt-cacatacaattacactgaattatgtgattttctcaaattattagc 12443513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 7918219 - 7918263
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||    
T  7918219 acacatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 40181920 - 40181876
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  40181920 acatataattacactgaattatgtgattttctcaaattattagca 40181876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 1864888 - 1864931
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  1864888 acacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 14332652 - 14332694
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  14332652 acatataattacactaaattatgtgattttctcaaattattag 14332694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 25098562 - 25098604
Alignment:
Q  36 tacacatataattacacttaattatttgattttctcaaattat 78  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  25098562 tacacatataattacactgaattatgtgattttctcaaattat 25098604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 34712391 - 34712437
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||    
T  34712391 acacatataattacactaaattatgttattttctcaaattattagca 34712437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 36878525 - 36878467
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  |||| |||||||||||| |||||| |||||||||||||||||||||    
T  36878525 gtgtcagacaccgacacctataattacactgaattatgtgattttctcaaattattagc 36878467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 6427401 - 6427356
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagc 6427356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 19324612 - 19324567
Alignment:
Q  38 cacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||||||| |||||| ||||||||||||||||| ||||    
T  19324612 cacatataattacactgaattatgtgattttctcaaattatcagca 19324567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 19562622 - 19562675
Alignment:
Q  30 gacacgtacacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||| |||||||||||||||||| || |||  |||||||||||||||||||||    
T  19562622 gacacctacacatataattacactgaactatgagattttctcaaattattagca 19562675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 25361937 - 25361896
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattat 78  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  25361937 acacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 37055871 - 37055924
Alignment:
Q  44 taattacacttaattatttgattttctcaaattattagcaatatcgatatatca 97  Q
    |||||||||| |||||| | |||||||||||||||||||| ||||||| |||||    
T  37055871 taattacactaaattatgtaattttctcaaattattagcagtatcgatgtatca 37055924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 38503371 - 38503326
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||    
T  38503371 acacatataattacactgaaatatatgattttctcaaattattagc 38503326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 44482281 - 44482240
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattat 78  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  44482281 acacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 10233304 - 10233260
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||    
T  10233304 acacatataattacactgaattatgtgattttctcaatttattag 10233260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 25452129 - 25452202
Alignment:
Q  8 aattaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||  ||||||| |||||  |||||||  |||||||| ||||||  |||||||||||||||||||||    
T  25452129 aattaggcgtgttccggtgtctgacaccgacacata--attacactgaattatgagattttctcaaattattagca 25452202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 13436522 - 13436463
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||| |||||  ||||||||||||||||| |||||| |||||| || ||||||||||||    
T  13436522 gtgtccgacaccaacacatataattacactgaattatgtgatttccttaaattattagca 13436463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 34298482 - 34298443
Alignment:
Q  42 tataattacacttaattatttgattttctcaaattattag 81  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  34298482 tataattacactgaattatgtgattttctcaaattattag 34298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 39101190 - 39101233
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||| ||||||||||||||||||| | |||||||||||||||||    
T  39101190 acacctataattacacttaattatgttattttctcaaattatta 39101233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 9709884 - 9709826
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  |||||||||||||||   |||||| |||||||||||||||||||||    
T  9709884 gtgtccgacaccgacacatataattacaacgaattatgtgattttctcaaattattagc 9709826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 12713337 - 12713379
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||    
T  12713337 acatataattacactaaattatgtgattttcttaaattattag 12713379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 12717428 - 12717470
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||    
T  12717428 acatataattacactaaattatgtgattttcttaaattattag 12717470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 31015087 - 31015049
Alignment:
Q  44 taattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  31015087 taattacactgaattatgtgattttctcaaattattagc 31015049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 39953141 - 39953199
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||| ||||||||| |||||| ||||||||| |||||||||||    
T  39953141 gtgtccgacaccgacacatacaattacactaaattatgtgattttctaaaattattagc 39953199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 49872888 - 49872838
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagcaatat 87  Q
    ||||||||||||||||| |||||| |  ||||||||||| |||||||||||    
T  49872888 acacatataattacactgaattatatagttttctcaaatgattagcaatat 49872838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 398773 - 398818
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||| |||||||||||| |||||| ||||||| |||||||||||||    
T  398773 acacctataattacactgaattatgtgattttttcaaattattagc 398818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 1486717 - 1486762
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||| |||||||||||| |||||| ||||||| |||||||||||||    
T  1486717 acacttataattacactgaattatgtgattttttcaaattattagc 1486762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 16927197 - 16927238
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||| |||||| ||||||| |||||||||||||    
T  16927197 atataattacactgaattatatgattttttcaaattattagc 16927238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 17831539 - 17831584
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||| |||||||| ||| || |||||||||||||||||||||    
T  17831539 acacatatgattacactgaataatgtgattttctcaaattattagc 17831584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 20157358 - 20157403
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||| |||||||| |||||| ||||||||||| |||||||||    
T  20157358 acacatatgattacactgaattatgtgattttctcacattattagc 20157403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 27471574 - 27471619
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||| |||||||||| |||||| || ||||||||||||||||||    
T  27471574 acacatgtaattacactgaattatgtgcttttctcaaattattagc 27471619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 34371764 - 34371720
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||    
T  34371764 acacatataattacactgaattatgtgattttctc-aattattagc 34371720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 36906048 - 36906003
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||| || |||||| ||||||||||| |||||||||    
T  36906048 acacatataattactctgaattatgtgattttctcagattattagc 36906003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 113357 - 113305
Alignment:
Q  30 gacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| ||||| | |||||||||| |||||| ||||||| |||||||||||||    
T  113357 gacacctacacttgtaattacactgaattatgtgattttttcaaattattagc 113305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 9828095 - 9828051
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||| ||||||||| |||||| ||||||| ||||||||||||    
T  9828095 acacataaaattacactgaattatgtgattttatcaaattattag 9828051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 10572597 - 10572641
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||    
T  10572597 acacatttaattacaccgaattatgtgattttctcaaattattag 10572641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 17425100 - 17425144
Alignment:
Q  36 tacacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||||||||||||||| | |||||| ||||||| |||||||||||    
T  17425100 tacacatataattacattgaattatgtgattttatcaaattatta 17425144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 35999330 - 35999374
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| ||| |||||| ||||||||| ||||||||||    
T  35999330 acacatataattatactaaattatatgattttcttaaattattag 35999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 39130762 - 39130818
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  ||||||||||||||||| |||||| | ||||||| |||||||||    
T  39130762 gtgtccgacaccgacacatataattacactaaattatataattttctaaaattatta 39130818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 52903313 - 52903257
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  ||||||||||||||||| |||||| ||||||| | |||||||||    
T  52903313 gtgtccgacaccgacacatataattacactgaattatatgattttattaaattatta 52903257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 21924915 - 21924989
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||| ||||||| |||||  ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  21924915 attaggcgtgtcccggtgtccgacaccgacacatataattacactgaattatttgatattctcaaattattagca 21924989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 7938192 - 7938122
Alignment:
Q  12 aggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||||||||||||  |||| |||||||||||| |||||| ||||||| |||||||||||||    
T  7938192 aggcgtgtctcggtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagc 7938122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 9025469 - 9025548
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgt-----acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||| ||||||||||||||      ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  9025469 attaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaattatgtgattttctcaaattattagca 9025548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 7086846 - 7086800
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  7086846 acacatataattacactaaattatgtgattttctcaaattattagca 7086800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 7265588 - 7265646
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||| |||||||||||||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttctcaaattattagc 7265646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 19040416 - 19040358
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||| |||||||||||||||||||||    
T  19040416 gtgtccgacacagacacatataattacactgaattatgtgattttctcaaattattagc 19040358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 7151463 - 7151419
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  7151463 acacatataattacacttaattatgtgattttttcaaattattag 7151419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 7996389 - 7996432
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  7996389 catataattacactgaattatatgattttctcaaattattagca 7996432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 8022412 - 8022369
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  8022412 catataattacactgaattatatgattttctcaaattattagca 8022369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 33001284 - 33001343
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||| |||||  ||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  33001284 gtgtccgacaccgacacatataattacatttaattatgtgattttttcaaattattagca 33001343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 26562740 - 26562694
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  26562740 acacatataattacactgaattatgtgattttctcaaatttttagca 26562694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 24832639 - 24832594
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||    
T  24832639 acacatataattacactaaattataagattttctcaaattattagc 24832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 30866152 - 30866197
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||    
T  30866152 acacatataattacattgaattatgtgattttctcaaattattagc 30866197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 5732505 - 5732561
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  ||||||||||||||||| || ||| |||||||||||||||||||    
T  5732505 gtgtccgacaccgacacatataattacactaaaatatgtgattttctcaaattatta 5732561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 7112829 - 7112789
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaatta 77  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  7112829 acacatataattacatttaattatttcattttctcaaatta 7112789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 8781316 - 8781356
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaatta 77  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  8781316 acacatataattacatttaattatttcattttctcaaatta 8781356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 8805586 - 8805626
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  8805586 ataattacactaaattatgtgattttctcaaattattagca 8805626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 9195762 - 9195806
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||    
T  9195762 acacatataattacactaaattatgtcattttctcaaattattag 9195806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 24138475 - 24138431
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  24138475 acatataaatacacttaattatatgattttttcaaattattagca 24138431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 9617485 - 9617442
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  9617485 acacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 11591878 - 11591917
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaatt 76  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  11591878 acacatataattacactgaattatgtgattttctcaaatt 11591917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 7378043 - 7377985
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||| | |||||| ||||||||||||||| |||||    
T  7378043 gtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatttttagc 7377985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 9027262 - 9027184
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgt-----acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||| ||||||||||||||      ||||||||||||||||  |||||| ||||| |||||||||||||||    
T  9027262 attagccgtgtcccggtgtcggacacgacaccgacacatataattacacggaattatgtgattatctcaaattattagc 9027184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 9629434 - 9629392
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatt 79  Q
    ||||||||||||||| | |||||| ||||||||||||||||||    
T  9629434 acacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 13360382 - 13360420
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaatta 77  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  13360382 acatataattacactgaattatgtgattttctcaaatta 13360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 13364713 - 13364759
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||| |||||||| |||||| ||||||||||||||||| ||||    
T  13364713 acacatatgattacactgaattatatgattttctcaaattataagca 13364759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 34073358 - 34073400
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||| ||||||  ||||||||||||||||||||    
T  34073358 catataattacactgaattatgagattttctcaaattattagc 34073400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 9658926 - 9658885
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||| |||||| ||||||||| |||||||||||    
T  9658926 atataattacactgaattatgtgattttcttaaattattagc 9658885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 10842583 - 10842538
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||| |||||||| |||||| ||||||| |||||||||||||    
T  10842583 acacatatgattacactaaattatgtgattttttcaaattattagc 10842538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 10888982 - 10889027
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||| ||||| |||||| ||||||| |||||||||||||    
T  10888982 acacatataatcacactaaattatgtgattttatcaaattattagc 10889027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 13851787 - 13851742
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||  | |||||||||||||||||||    
T  13851787 acacatataattacactgaattacgttattttctcaaattattagc 13851742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 31579239 - 31579276
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  31579239 ataattacactgaattatgtgattttctcaaattatta 31579276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 32511674 - 32511719
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  32511674 acacttataattacactgaattatgtgattttcttaaattattagc 32511719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 1532290 - 1532246
Alignment:
Q  38 cacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||||| |||||| | ||||| |||||||||||||    
T  1532290 cacatataattacactgaattatgtaattttatcaaattattagc 1532246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 7723260 - 7723304
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||  || |||||| ||||||||||||||||||||||    
T  7723260 acatataattatgctgaattatatgattttctcaaattattagca 7723304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 17302398 - 17302354
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||  |||||| ||||||||| ||||||||||    
T  17302398 acacatataattacacaaaattatgtgattttcttaaattattag 17302354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 19044515 - 19044471
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||| ||||| |||||| |||| |||||||||||||||    
T  19044515 acacatataataacactgaattatgtgatattctcaaattattag 19044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 21142169 - 21142121
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagcaat 85  Q
    |||||||||| || ||| |||||| ||||||||||||||||||| ||||    
T  21142169 acacatataactagactgaattatatgattttctcaaattattaacaat 21142121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 26178689 - 26178733
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    |||||||| |||||||| |||||| ||||||| ||||||||||||    
T  26178689 acacatatgattacactaaattatgtgattttatcaaattattag 26178733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 14731791 - 14731717
Alignment:
Q  10 ttaggcgtgtctcggtgtcggacacgt-acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  14731791 ttaggcgtgtcctggtgtcggacacgacacacatataattacactaaattatgtgattttctcaaattattagca 14731717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 13844591 - 13844650
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||| |||||  ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgattttctcaaattattagca 13844650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 3025615 - 3025554
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagcaat 85  Q
    ||||| |||||  |||| |||||||||||| |||||| ||||||||||||||||||||||||    
T  3025615 gtgtccgacactgacacctataattacactgaattatgtgattttctcaaattattagcaat 3025554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 34897136 - 34897091
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  34897136 acacatataattacactgaattatgtgattttctcaaattattagc 34897091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 39954288 - 39954332
Alignment:
Q  38 cacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||||| |||||| |||||||||||||||||||||    
T  39954288 cacatataattacactaaattatgtgattttctcaaattattagc 39954332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 12570516 - 12570562
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||||||||||||||| || |||||| ||||||||||||    
T  12570516 acacatataattacacttaattatgtgtttttcttaaattattagca 12570562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 12606837 - 12606883
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||    
T  12606837 acacatataattacattgaattatatgattttctcaaattattagca 12606883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 31236585 - 31236631
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||    
T  31236585 acacatataattacattgaattatgtgattttctcaaattattagca 31236631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 24362210 - 24362255
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  24362210 acacatataattacactgaattatgtgattctctcaaattattagc 24362255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 34222998 - 34222953
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||    
T  34222998 acacatataattacacttaattatgtgattttattaaattattagc 34222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 4948730 - 4948659
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||| |||| |||||  |||| | |||||||||| |||||| ||||||| ||||||||||||    
T  4948730 attaggcgtgtctcg-tgtccgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 4948659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 14134746 - 14134706
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  14134746 atataattacactgaattatgtgattttctcaaattattag 14134706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 33405379 - 33405435
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  ||||||||||||||||| |||||| || ||||||||||||||||    
T  33405379 gtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattatta 33405435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 4611583 - 4611540
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||| |||||| | |||||||||||||||||||    
T  4611583 acatataattacactgaattatgttattttctcaaattattagc 4611540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 4786346 - 4786389
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||    
T  4786346 acacatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 11803310 - 11803267
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||    
T  11803310 acacatataattacactgaattatgtgattttcttaaattatta 11803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 11927094 - 11927137
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||    
T  11927094 acacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 27213598 - 27213552
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||| | |||||| ||||||||| ||||||||||||    
T  27213598 acacatataattacagtgaattatgtgattttctgaaattattagca 27213552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 20785473 - 20785518
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||| | |||||| |||||| ||||||||||||||    
T  20785473 acacatataattacattaaattatgtgatttcctcaaattattagc 20785518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 7658510 - 7658470
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| |||||| | ||||||||||||||||||    
T  7658510 atataattacactgaattatgtaattttctcaaattattag 7658470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 12559116 - 12559160
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||| |||||||| |||||| | ||||||||||||||||||||    
T  12559116 acatatgattacactgaattatatcattttctcaaattattagca 12559160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 13203688 - 13203648
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| |||||| | ||||||||||||||||||    
T  13203688 atataattacactgaattatgtaattttctcaaattattag 13203648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 15816137 - 15816181
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||||    
T  15816137 acacttataattacactaaattatgtgattttttcaaattattag 15816181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 20679403 - 20679447
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    |||| |||||||||||| || ||| ||||||||||||||||||||    
T  20679403 acacttataattacactgaactatgtgattttctcaaattattag 20679447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 29776085 - 29776041
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||| ||| |||||  ||||||||||||||||||||||    
T  29776085 acatataattatactgaattacgtgattttctcaaattattagca 29776041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 21616822 - 21616768
Alignment:
Q  28 cggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  21616822 cggacacgtacacatataattacactgaattatgtgattttctcaaattattagc 21616768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 42832256 - 42832329
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||| ||| |||||||||  |||| |||||||||||| || ||| | |||||||||||||||||||    
T  42832256 attaggcgtgtcccggagtcggacaccgacacttataattacactgaaatatgtaattttctcaaattattagc 42832329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 30527603 - 30527646
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  30527603 acacatataattacactaaattatatgattttctcaaattatta 30527646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 39279726 - 39279683
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  39279726 acacatataattacactgaattatttgattttctcatattatta 39279683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 34691800 - 34691858
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||| ||||||| |||||||||||||    
T  34691800 gtgtccgacaccgacacatataattacactgaattatatgattttatcaaattattagc 34691858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 34714212 - 34714270
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||| ||||||| |||||||||||||    
T  34714212 gtgtccgacaccgacacatataattacactgaattatatgattttatcaaattattagc 34714270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 5367256 - 5367199
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||| |||||  ||||||||||||||||| |||||| |||||| |||||||||||||    
T  5367256 gtgtccgacaccgacacatataattacactgaattatgtgatttcctcaaattattag 5367199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 23718077 - 23718032
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  23718077 acacatataattacactgaattatgtgactttctcaaattattagc 23718032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 24105749 - 24105704
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  24105749 acacatataattacactgaattatgtgactttctcaaattattagc 24105704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 37411252 - 37411297
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||    
T  37411252 acacatataatcacactgaattatgtgattttctcaaattattagc 37411297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 44860371 - 44860326
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||    
T  44860371 acacatataattacactgaattatgcgattttctcaaattattagc 44860326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 21782832 - 21782872
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagca 21782872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 2415368 - 2415325
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||| |||||||||||||| | |||||||||||||||||    
T  2415368 acacatatagttacacttaattatataattttctcaaattatta 2415325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 2665897 - 2665940
Alignment:
Q  38 cacatataattacacttaattatttgattttctcaaattattag 81  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||    
T  2665897 cacatataattacactaaattatgtgattttctaaaattattag 2665940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 28677958 - 28677915
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||    
T  28677958 acatataattacactgaattatgtgattttttcaaattattagc 28677915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 35449564 - 35449521
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||| | |||||||||||||||||||    
T  35449564 acacatataattacactgaattctgtgattttctcaaattatta 35449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 25846817 - 25846748
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||  ||||| |||||||| |   |||||||||||| ||| || ||||||||||||||||||||    
T  25846817 attaggcgtgtcctggtgttggacacgtcc---tataattacactgaatcatgtgattttctcaaattattag 25846748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 18276572 - 18276527
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| ||||||||||| |||||  |||||||||||||||||||||    
T  18276572 acacacataattacactgaattaagtgattttctcaaattattagc 18276527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 18889599 - 18889644
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||| |||||||| |||||| |||||||||||| ||||||||    
T  18889599 acacatatgattacactgaattatgtgattttctcaatttattagc 18889644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 27286300 - 27286345
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||| ||||||||||||||||||| |||| || |||||||||||||    
T  27286300 acacctataattacacttaattatgtgatcttatcaaattattagc 27286345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 31808128 - 31808083
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| ||||||| | |||||||||||    
T  31808128 acacatataattacactgaattatgtgattttgttaaattattagc 31808083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 32199150 - 32199191
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||| |||||||||| ||||||| |||||||||||    
T  32199150 acatataattatacttaattatgtgattttatcaaattatta 32199191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 36281734 - 36281693
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattatta 80  Q
    |||||| |||||||| |||||| |||||||||||||||||||    
T  36281734 acatatgattacactaaattatgtgattttctcaaattatta 36281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 22440581 - 22440651
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||   ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  22440581 attaggcgtgtcctagtgtcggacacgt-cacatataattacactgaattatgtgattttctcaaattatta 22440651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 5775366 - 5775409
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  5775366 acacatataattacacttaattatgtgattttctcaaattatta 5775409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 36635381 - 36635331
Alignment:
Q  31 acacgtacacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  36635381 acacgaacacatataattacactgaattatgtgattttctcaaattattag 36635331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 999356 - 999410
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagcaatatcgat 91  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||| || |||||    
T  999356 acacatataattacactaaattatatgatttactcaaattattagcgatgtcgat 999410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 26504307 - 26504353
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||    
T  26504307 acacatataattacactgaactatttgattttcttaaattattagca 26504353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 903971 - 903930
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  903971 acatataattacactgaattatgtgattttctcaaattatta 903930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 9299054 - 9299110
Alignment:
Q  28 cggacacgtacacatataattacacttaattatttgattttctcaaattattagcaat 85  Q
    |||||||  |||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  9299054 cggacactgacacatataattacacttaa-tatattattttctcaaattattagcaat 9299110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 18576045 - 18576098
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagcaatatcga 90  Q
    ||||||||||||||||  |||||| ||||||||||||||||| |||| ||||||    
T  18576045 acacatataattacaccgaattatgtgattttctcaaattatcagcagtatcga 18576098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 40613501 - 40613456
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  40613501 acacatataattacactgaattatgtgattttctcaaaatattagc 40613456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 8423731 - 8423771
Alignment:
Q  42 tataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  8423731 tataattacactgaattatgtgattttctcaaattattagc 8423771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 10499251 - 10499314
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaa 73  Q
    ||||||||||| |||| ||| |||||  ||||||||||||||||| |||||| ||||||||||||    
T  10499251 attaggcgtgtgtcgg-gtccgacactgacacatataattacactaaattatgtgattttctcaa 10499314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 56257978 - 56257938
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  56257978 ataattacactgaattatatgattttctcaaattattagca 56257938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 33950201 - 33950142
Alignment:
Q  23 ggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||| |||||  |||||||| |||||| | |||||| |||||||||||||||||||||    
T  33950201 ggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattattagc 33950142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 40742642 - 40742599
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||||||||||||||||  ||||| |||||||||||||||||||    
T  40742642 acacatataattacactagattatatgattttctcaaattatta 40742599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 13134501 - 13134455
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| |||||| ||||||||| ||||||| ||||    
T  13134501 acacatataattacactaaattatgtgattttcttaaattataagca 13134455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 15029816 - 15029770
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| |||||| |||| || ||||||||||||||    
T  15029816 acacatataattacactgaattatgtgatattttcaaattattagca 15029770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 15659768 - 15659814
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||  ||||||  |||||||||||||||||||||    
T  15659768 acacatataattacaccgaattatgagattttctcaaattattagca 15659814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 3712517 - 3712562
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||| | |||||  |||||||||||||||||||||    
T  3712517 acacatataattacattgaattacatgattttctcaaattattagc 3712562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 7214533 - 7214574
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattag 81  Q
    |||||||||||| | |||||| ||||||||||||||||||||    
T  7214533 catataattacattaaattatgtgattttctcaaattattag 7214574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 16189760 - 16189715
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| ||||||||||| |||||| ||||||||||||||| |||||    
T  16189760 acacacataattacactgaattatgtgattttctcaaatttttagc 16189715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 54580018 - 54580075
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||| |||||  |||| |||||||||||| |||||| ||||||| ||||||||||||    
T  54580018 gtgtccgacaccgacacttataattacactgaattatgtgattttttcaaattattag 54580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 9996889 - 9996849
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattatt 79  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  9996889 acatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 11596353 - 11596405
Alignment:
Q  30 gacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| ||||| | |||||||||| |||||| ||||||| |||||||||||||    
T  11596353 gacacctacacttgtaattacactgaattatgtgattttttcaaattattagc 11596405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 30838256 - 30838208
Alignment:
Q  42 tataattacacttaattatttgattttctcaaattattagcaatatcga 90  Q
    |||||||||||| |||||| | ||||| |||||||||||||| ||||||    
T  30838256 tataattacactaaattatataattttatcaaattattagcagtatcga 30838208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 35952627 - 35952671
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||| | |||||| ||||||| ||||||||||||||    
T  35952627 acatataattacattgaattatatgattttatcaaattattagca 35952671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 37698759 - 37698719
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| |||||| | ||||||||||||||||||    
T  37698759 atataattacactgaattatataattttctcaaattattag 37698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 44081585 - 44081637
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagcaatatcg 89  Q
    ||||||||||||||| | |||||| ||||||| ||||||||||| | ||||||    
T  44081585 acacatataattacattaaattatatgattttttcaaattattaacgatatcg 44081637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 16341546 - 16341504
Alignment:
Q  38 cacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  16341546 cacatataattacacttaattatgtgattttctcaaattatta 16341504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 5548727 - 5548686
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattat 78  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  5548727 acacatataattacactgaattatttgattttctcaaattat 5548686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 7328699 - 7328752
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagcaatatcga 90  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||| ||||||    
T  7328699 acacatataattacactaaattatgttattttctcaaattattagcagtatcga 7328752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 3721157 - 3721098
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||| |||||  ||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  3721157 gtgtccgacaccgacacatataattatactaaattatgtgattttctcaaattattagca 3721098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 17851482 - 17851428
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagcaatatcgat 91  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||  |||||||    
T  17851482 acacatataattacactgaattatgtgattttctaaaattattagcggtatcgat 17851428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 20549855 - 20549797
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||  |||||||||||||||||||||    
T  20549855 gtgtccgacaccgacacatataattacactgaattacgtgattttctcaaattattagc 20549797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 42720885 - 42720943
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||| |||||||| ||||||| |||||||||||||    
T  42720885 gtgtcagacactgacacatataattacatttaattatgtgattttttcaaattattagc 42720943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 32308171 - 32308126
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||    
T  32308171 acacatacaattacactgaattatgtgattttctcaaattattagc 32308126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 1401089 - 1401025
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagcaatatc 88  Q
    |||||||||||  | || |||||||||||| |||||| ||| ||||||||||||||||| |||||    
T  1401089 gtgtcggacaccgatacttataattacactgaattatgtgagtttctcaaattattagcgatatc 1401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 22868093 - 22868049
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  22868093 acacatataattacactgaattatgtgattttctcatattattag 22868049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 2424659 - 2424620
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  2424659 ataattacactgaattatgtgattttctcaaattattagc 2424620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 2425741 - 2425784
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||| || ||||||||||| |||||||||||||||||||    
T  2425741 acacatatagttccacttaattatgtgattttctcaaattatta 2425784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 5233680 - 5233637
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||||||||||||||||  ||||| |||||||||||||||||||    
T  5233680 acacatataattacactagattatgtgattttctcaaattatta 5233637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 15902873 - 15902830
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| ||||||| |||||||||||    
T  15902873 acacatataattacactaaattatgtgattttatcaaattatta 15902830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 29787383 - 29787422
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattattagc 29787422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 22602718 - 22602756
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaat 75  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  22602718 acacatataattacactgaattatgtgattttctcaaat 22602756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 27093424 - 27093466
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||| |||||| ||||||||| |||||||||||    
T  27093424 catataattacactaaattatgtgattttcttaaattattagc 27093466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 27184877 - 27184835
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||||||||| |||||| ||||||||| |||||||||||    
T  27184877 catataattacactaaattatgtgattttcttaaattattagc 27184835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 8160467 - 8160422
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| | ||||||| |||||||||||    
T  8160467 acacatataattacactaaattatgtaattttcttaaattattagc 8160422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 9482985 - 9482944
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattat 78  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  9482985 acacatataattacactgaattgtgtgattttctcaaattat 9482944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 12278899 - 12278843
Alignment:
Q  23 ggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||||| |||||| ||||||||||||||||| |||||| | ||||||| |||||||||    
T  12278899 ggtgtccgacacg-acacatataattacactgaattatgtcattttcttaaattatta 12278843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 19206101 - 19206056
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||| | | |||||| |||||||||||||||||||||    
T  19206101 acacatataattataatgaattatgtgattttctcaaattattagc 19206056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 19992052 - 19992007
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||| |||||||||||| || ||| |||||||||||||||||||||    
T  19992052 acacttataattacactgaaatatgtgattttctcaaattattagc 19992007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 28155649 - 28155576
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||  |||||| |||||  |||| | |||||||||  |||||| | |||||||||||||||||||    
T  28155649 attaggcgtgtcctggtgtccgacaccgacacttgtaattacaccgaattatgtaattttctcaaattattagc 28155576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 30813856 - 30813815
Alignment:
Q  44 taattacacttaattatttgattttctcaaattattagcaat 85  Q
    |||||||||| |||||| | ||||||||||||||||||||||    
T  30813856 taattacactgaattatgtaattttctcaaattattagcaat 30813815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5835298 - 5835254
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||| | ||||||||||| ||||||    
T  5835298 acacatataattacactgaattatgttattttctcaaactattag 5835254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5956324 - 5956280
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||| | |||||||||||||| | ||||||||||    
T  5956324 acacatataattacattaaattatttgatttttttaaattattag 5956280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 6630920 - 6630964
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||    
T  6630920 acacatataattacactgaattaagtgactttctcaaattattag 6630964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 12289159 - 12289119
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  12289159 ataattccactgaattatgtgattttctcaaattattagca 12289119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 17307944 - 17307904
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaatta 77  Q
    ||||||||||||||||| |||||| | ||||||||||||||    
T  17307944 acacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 38143287 - 38143231
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  ||||||||||||||| | |||||| ||||||| |||||||||||    
T  38143287 gtgtctgacaccaacacatataattacattaaattatgtgattttttcaaattatta 38143231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 39205931 - 39205885
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  39205931 acacatataattacacctaattatatgattttctcaaattattagca 39205885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 6471897 - 6471942
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||    
T  6471897 acacatataattacactgaattatgtgattttctcaaattattagc 6471942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 16203803 - 16203849
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||    
T  16203803 acacatataattacactaaattatgagattttctcaaattattagca 16203849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 23012416 - 23012462
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||||    
T  23012416 acacatataattacattaaattatatgattttctcaaattattagca 23012462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 30502383 - 30502441
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||  |||||||||||||||||||||    
T  30502383 gtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagc 30502441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 30542726 - 30542784
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||  |||||||||||||||||||||    
T  30542726 gtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagc 30542784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 41091265 - 41091311
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| |||||| |||||||||||||| |||||||    
T  41091265 acacatataattacactgaattatgtgattttctcaaatcattagca 41091311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 3966554 - 3966509
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||    
T  3966554 acacatataattacactgaattgtgtgattttctcaaattattagc 3966509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 12927701 - 12927660
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  12927701 atataattacactaaattatatgattttctcaaattattagc 12927660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 27144514 - 27144469
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||||    
T  27144514 acacatataattacactaaattatgtgatttcctcaaattattagc 27144469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 35017085 - 35017044
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattag 81  Q
    |||||||||||||| |||||| ||||||||||||||||||||    
T  35017085 catataattacactaaattatgtgattttctcaaattattag 35017044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 36838594 - 36838549
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||    
T  36838594 acacatataattacactaaattatgtaattttctcaaattattagc 36838549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 3751938 - 3751982
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||    
T  3751938 acacatataattatacttagttatgtgattttctcaaattattag 3751982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 26312818 - 26312778
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattatt 79  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  26312818 acatataattacactgaattaattgattttctcaaattatt 26312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 28588669 - 28588725
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  |||| |||||||||||| |||||| |||||||||||||||||||    
T  28588669 gtgtccgacaccgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 24273039 - 24273078
Alignment:
Q  38 cacatataattacacttaattatttgattttctcaaatta 77  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  24273039 cacatataattacactgaattatgtgattttctcaaatta 24273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 24389175 - 24389136
Alignment:
Q  38 cacatataattacacttaattatttgattttctcaaatta 77  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  24389175 cacatataattacactgaattatgtgattttctcaaatta 24389136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 18421849 - 18421895
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||||||||  ||||| ||||||||||||||||| ||||    
T  18421849 acacatataattacactggattatgtgattttctcaaattatcagca 18421895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 11685990 - 11685945
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| ||||||  || |||||||||||||||||    
T  11685990 acacatataattacactaaattatgcgactttctcaaattattagc 11685945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 14873568 - 14873527
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattat 78  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  14873568 acacatataattacactaaattatgtgcttttctcaaattat 14873527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 17593734 - 17593775
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||| |||||  |||||||||||||||||||||    
T  17593734 atataattacactgaattacgtgattttctcaaattattagc 17593775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 34879401 - 34879356
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||||||| |||||||| |||||| ||||||||||||||| |||||    
T  34879401 acacatattattacactgaattatatgattttctcaaatttttagc 34879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 15086538 - 15086482
Alignment:
Q  21 tcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaatta 77  Q
    |||||||| |||||  ||||||||||||||| |  ||||| ||||||||||||||||    
T  15086538 tcggtgtcagacaccgacacatataattacattacattatatgattttctcaaatta 15086482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 11313808 - 11313854
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  11313808 acacatataattacactaaattatgtgattttctcaaattattagca 11313854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 48353741 - 48353783
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  48353741 acatataattacaattaattatttgattttctcaaattattag 48353783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 49505149 - 49505207
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||| |||||||||||||||||||||    
T  49505149 gtgtccgacactgacacatataattacactaaattatgtgattttctcaaattattagc 49505207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 4201459 - 4201404
Alignment:
Q  25 tgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||  ||| |||||||||||||||||||| ||||||| |||||||||||    
T  4201459 tgtcggacaccaacatatataattacacttaattatgtgattttttcaaattatta 4201404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 32804548 - 32804591
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  32804548 acacatataattacactaaattatgtgattttctcaaattatta 32804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 7928514 - 7928456
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  ||||||||||||||||| |||||| ||||||| |||||||||||||    
T  7928514 gtgtccgacaccgacacatataattacactgaattatgtgattttttcaaattattagc 7928456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 8383321 - 8383263
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||| |||||  |||| |||||||||||| |||||| |||||||||||||||||||||    
T  8383321 gtgtccgacaccgacacttataattacactgaattatatgattttctcaaattattagc 8383263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 10455841 - 10455795
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||||||    
T  10455841 acacatataattacacttagttatatgattttctcatattattagca 10455795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 11252023 - 11251981
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagcaat 85  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattattagcaat 11251981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 2731869 - 2731820
Alignment:
Q  31 acacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||| |||||    
T  2731869 acacatacacatataattacacttaattatgtgattttcttaaagtatta 2731820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 8039843 - 8039888
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||    
T  8039843 acacatataattacactgaattatataattttctcaaattattagc 8039888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 27277852 - 27277892
Alignment:
Q  43 ataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  27277852 ataattacactaaattatgtgattttctcaaattattagca 27277892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 29508495 - 29508451
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  29508495 acacatataattacactgaattatatgattttttcaaattattag 29508451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 9624689 - 9624646
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattagca 83  Q
    |||||||||||| | |||||| ||||||||||||||||||||||    
T  9624689 catataattacattgaattatgtgattttctcaaattattagca 9624646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 16192758 - 16192801
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||||||| |||||| | |||||||||||||||||    
T  16192758 acacatataattacactgaattatgttattttctcaaattatta 16192801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 8789545 - 8789599
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattat 78  Q
    ||||| |||||  ||||||||||||||||  |||||| |||||||||||||||||    
T  8789545 gtgtccgacaccgacacatataattacacggaattatgtgattttctcaaattat 8789599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 12704056 - 12704014
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||| |||||| || |||||||||||||||||    
T  12704056 acatataattacactgaattatgtgcttttctcaaattattag 12704014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 13414545 - 13414487
Alignment:
Q  12 aggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttct 70  Q
    ||||||||| | ||||| |||||  ||||||||||||||| | ||||||||||||||||    
T  13414545 aggcgtgtccctgtgtccgacaccgacacatataattacattgaattatttgattttct 13414487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 10268468 - 10268537
Alignment:
Q  11 taggcgtgtctcggtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    |||||||||  ||||||| |||||  |||| | |||||||||| |||||| ||||||| |||||||||||    
T  10268468 taggcgtgttccggtgtctgacactgacacttgtaattacactaaattatgtgattttttcaaattatta 10268537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 10690274 - 10690315
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||| |||||| ||||||||||| |||||||||    
T  10690274 atataattacactgaattatgtgattttctcagattattagc 10690315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 11493372 - 11493413
Alignment:
Q  40 catataattacacttaattatttgattttctcaaattattag 81  Q
    |||||||||||||| |||||| ||||||||||| ||||||||    
T  11493372 catataattacactgaattatgtgattttctcacattattag 11493413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 11665995 - 11665950
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||| | ||||||| |||||||||||||    
T  11665995 acacatataattacactaaattgtgtgattttatcaaattattagc 11665950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 18180588 - 18180547
Alignment:
Q  39 acatataattacacttaattatttgattttctcaaattatta 80  Q
    |||| |||||||| |||||||||| |||||||||||||||||    
T  18180588 acatgtaattacatttaattatttcattttctcaaattatta 18180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 25948895 - 25948940
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||| |||||||||||| |||||| ||||||| |||||||||||||    
T  25948895 acacttataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 34307788 - 34307833
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    |||| |||||||||||| || ||| |||||||||||||||||||||    
T  34307788 acacttataattacactgaaatatgtgattttctcaaattattagc 34307833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 15314884 - 15314924
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaatta 77  Q
    ||||||||||||||||| |||||| ||||||| ||||||||    
T  15314884 acacatataattacactaaattatgtgattttttcaaatta 15314924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 17005627 - 17005671
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    |||| |||||||||||| |||||| ||||||| ||||||||||||    
T  17005627 acacttataattacactgaattatatgattttatcaaattattag 17005671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 20691383 - 20691327
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  |||||||| |||||||| |||||| | |||||||||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 25093566 - 25093510
Alignment:
Q  24 gtgtcggacacgtacacatataattacacttaattatttgattttctcaaattatta 80  Q
    ||||| |||||  ||||||||||||||||| |||| | |||||||||||||| ||||    
T  25093566 gtgtccgacaccgacacatataattacactgaattgtgtgattttctcaaatcatta 25093510  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 29112292 - 29112332
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||| |||||| |||||||||||||| |||||    
T  29112292 atataattacactgaattatatgattttctcaaataattag 29112332  T

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Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 135287 - 135366
Alignment:
Q  9 attaggcgtgtctcggtgtcggacacgt-----acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    ||||||||||||  |||||||||||||      ||||||||||||||||  |||||| ||||||||||||||||||||||    
T  135287 attaggcgtgtcctggtgtcggacacgacaccgacacatataattacacagaattatgtgattttctcaaattattagca 135366  T

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Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 44533 - 44578
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagc 82  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||    
T  44533 acacatataattacactgaattatgtgattttctcaaatttttagc 44578  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 9755 - 9799
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattag 81  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||    
T  9755 acacatataattacactgaattaagtgattttctcaaattattag 9799  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 90890 - 90851
Alignment:
Q  41 atataattacacttaattatttgattttctcaaattatta 80  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  90890 atataattacactgaattatatgattttctcaaattatta 90851  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 53231 - 53189
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattatt 79  Q
    |||| |||||||||||| |||||| ||||||||||||||||||    
T  53231 acacttataattacactgaattatgtgattttctcaaattatt 53189  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 263380 - 263426
Alignment:
Q  37 acacatataattacacttaattatttgattttctcaaattattagca 83  Q
    |||| |||||||||||| |||||| || |||||||||||||||||||    
T  263380 acacttataattacactgaattatgtggttttctcaaattattagca 263426  T

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