View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_low_30 (Length: 235)
Name: NF1883_low_30
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_low_30 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 7714007 - 7713788
Alignment:
| Q |
16 |
acttcttctgcaacgctgacgacaaagccgccctcctcaaaattagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactga |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7714007 |
acttcttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactga |
7713908 |
T |
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| Q |
116 |
atgttgtgactggaacttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttcca |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
7713907 |
atgttgtgactggaacttcgtaggttgcggcagaccttatcctggccgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttcca |
7713808 |
T |
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| Q |
216 |
gcagagtttggcgacctccc |
235 |
Q |
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| T |
7713807 |
gcggagtttggcgacctccc |
7713788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 7699662 - 7699443
Alignment:
| Q |
16 |
acttcttctgcaacgctgacgacaaagccgccctcctcaaaattagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactga |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || || || ||||| || |||||||||||||||||||| || |
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| T |
7699662 |
acttcttctgcaacgccgacgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgactgggacaacaacaccga |
7699563 |
T |
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| Q |
116 |
atgttgtgactggaacttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttcca |
215 |
Q |
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| T |
7699562 |
atgttgtgactggagcttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttcca |
7699463 |
T |
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| Q |
216 |
gcagagtttggcgacctccc |
235 |
Q |
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|| ||||||||| ||||||| |
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| T |
7699462 |
gcggagtttggcaacctccc |
7699443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 7727507 - 7727305
Alignment:
| Q |
36 |
gacaaagccgccctcctcaaaattagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaact |
132 |
Q |
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||||||||| | ||||||||||| ||||||||||| |||||||| |||||||| || ||| |||||||||| || || |||||| ||||||| || |
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| T |
7727507 |
gacaaagccactctcctcaaaatcagagaccatttcggcggccccaacggccgcctctccgattgggacaacagtacagactgttgtagcgactggagct |
7727408 |
T |
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| Q |
133 |
tcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttccagcagagtttggcgacct |
232 |
Q |
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| T |
7727407 |
tcgtcgggtgtggcaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttctggtacgcttccagcagagtttggcgacct |
7727308 |
T |
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| Q |
233 |
ccc |
235 |
Q |
| |
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||| |
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| T |
7727307 |
ccc |
7727305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 7731685 - 7731465
Alignment:
| Q |
18 |
ttcttctgcaacgctgacgacaaagccgccctcctcaaaattagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaat |
117 |
Q |
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|||| ||||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||| |||||||| ||| ||| ||||||||| || || | |
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| T |
7731685 |
ttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagact |
7731586 |
T |
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| Q |
118 |
gttgt---gactggaacttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttcc |
214 |
Q |
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||||| ||||||| ||||||||| || || | ||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
7731585 |
gttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttcc |
7731486 |
T |
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| Q |
215 |
agcagagtttggcgacctccc |
235 |
Q |
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|| |||||||||||||||||| |
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| T |
7731485 |
agtagagtttggcgacctccc |
7731465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 7739843 - 7739626
Alignment:
| Q |
18 |
ttcttctgcaacgctgacgacaaagccgccctcctcaaaattagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaat |
117 |
Q |
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|||| ||||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||| |||||||| ||| ||| ||||||||| || || | |
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| T |
7739843 |
ttctcctgcaacgccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagact |
7739744 |
T |
|
| Q |
118 |
gttgt---gactggaacttcgtcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcggccgtggctggggtctttcaggtacgcttcc |
214 |
Q |
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||||| ||||||| ||||||||| || || | ||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| || |
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| T |
7739743 |
gttgtagcgactggagcttcgtcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgctacc |
7739644 |
T |
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| Q |
215 |
agcagagtttggcgacct |
232 |
Q |
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||| |||||||||||||| |
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| T |
7739643 |
agcggagtttggcgacct |
7739626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 12907817 - 12907863
Alignment:
| Q |
39 |
aaagccgccctcctcaaaattagagaccattttggcggccctaacgg |
85 |
Q |
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||||| || ||||||||||| ||||||||||| |||||||||||||| |
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| T |
12907817 |
aaagctgctctcctcaaaataagagaccatttcggcggccctaacgg |
12907863 |
T |
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