View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_low_34 (Length: 224)
Name: NF1883_low_34
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28471284 - 28471503
Alignment:
| Q |
1 |
ttctttcacatctgcttccccgacattaaccttagcttcatccttaaaattctcatttaattctggatgataaacaaatgtaacacgcggtcctttcacg |
100 |
Q |
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| T |
28471284 |
ttctttcacatctgcttccccgacattaaccttagcttcatccttaaaattctcatttaattctggatgataaacaaatgtaacacgcggtcctttcacg |
28471383 |
T |
|
| Q |
101 |
tgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggataagattgtggaaaccaatcaccaacctcatctt |
200 |
Q |
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| T |
28471384 |
tgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggataagattgtggaaaccaatcaccaacctcatctt |
28471483 |
T |
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| Q |
201 |
caacaatattaacataaact |
220 |
Q |
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|||||||||||||||||||| |
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| T |
28471484 |
caacaatattaacataaact |
28471503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 40806798 - 40806698
Alignment:
| Q |
68 |
tgataaacaaatgtaacacgcggtcctttcacgtgtgacaacataatagaagtgttgtaatgaacaaaataaacattgaaatctttcttatgaattggat |
167 |
Q |
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||||||||||| || | || |||| |||||| | |||||||| |||||||||||||| ||||||||||| ||||||||| |||||| || ||| |||| |
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| T |
40806798 |
tgataaacaaacgtgataccaggtcttttcacataagacaacattatagaagtgttgtagtgaacaaaatacacattgaaagctttctgatcaataggat |
40806699 |
T |
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| Q |
168 |
a |
168 |
Q |
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| T |
40806698 |
a |
40806698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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