View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_low_5 (Length: 550)
Name: NF1883_low_5
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 520
Target Start/End: Complemental strand, 7062827 - 7062339
Alignment:
| Q |
20 |
tgaaccttgaaaagacaattaaagagaaggtggattcaacattgtcaagaaagtagttggctctacaaggtacctatacaataaacaaactttatatttg |
119 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7062827 |
tgaaccttgaaaagacaattaaagagaaggtggtttcaacattgtcaagaaagtagttggctctacaaggtacctatacaataaacaaactttatatttg |
7062728 |
T |
|
| Q |
120 |
ttttacagttggataaatcaatagaaggtctcacctgatggatgccaaaagagaaacaaaggtaattaaaatgaatctaaatttatggttgtaagcctgc |
219 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |
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| T |
7062727 |
ttttacagttggataaatcaatagaaggtctcaactgatggatgccaaaagagaaacaagggtacttaaaatgaatctaaatttatggttgtaagcttgc |
7062628 |
T |
|
| Q |
220 |
aggaattttctggtgcagactgctttggacataaggttgataggttgacttatgatccttgttagggattctagctgcaccaaattattggtgttcaaag |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7062627 |
tggaattttctggtgcagactgctttggacataaggttgataggatgacttatgatccttgt---------tagctgcaccaaattattggtgttcaaag |
7062537 |
T |
|
| Q |
320 |
aaacagtcagttgtggccttctctttttgggagactgagtacataattaggtcgattgcaagaatttaatctcatctcacacacggttgctaattgatta |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7062536 |
aaacagtcagttgtggccttctctttttgggagactgagtacataattaggtcgattgcaagaatttaatctcatctcacacacggttgctaattga-ta |
7062438 |
T |
|
| Q |
420 |
ataaatccccaatacctagctaagaagcctatctcacatggtcgatgcatacaattaagaataaaaaacatactacatattcaacaaacaagcatttgat |
519 |
Q |
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| T |
7062437 |
ataaatcccccatacctagctaagaagccta--tcacatggtagatgcatacaattaagaataaaaaacatactacatattcaacaaacaagcatttgat |
7062340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 210 - 520
Target Start/End: Complemental strand, 7010640 - 7010331
Alignment:
| Q |
210 |
gtaagcctgcaggaattttctggtgcagactgctttggacataaggttgataggttgacttatg--atccttgttagggattctagctgcaccaaattat |
307 |
Q |
| |
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|||| ||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7010640 |
gtaatcctgctgggattttctggtgcagactgctttggacataaggctgataggaggacttatataatccttgttagggattctagctgcaccaaattat |
7010541 |
T |
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| Q |
308 |
tggtgttcaaagaaacagtcag-ttgtggccttctctttttgggagactgagtacataattaggtcgattgcaagaatttaatctcatctcacacacggt |
406 |
Q |
| |
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| T |
7010540 |
tggtgttcaaaggaacagtcagcttgtggccttctatttttgggagactgagtacataattgggttgaatgcaag-----aatctaatctcacacacggt |
7010446 |
T |
|
| Q |
407 |
tgctaattgattaataaatccccaatacctagctaagaagcctatctcacatggtcgatgcatacaattaagaat-aaaaaaca-tactacatattcaac |
504 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||| ||| |||||||| |||||||||||||| |
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| T |
7010445 |
tgctaattga-taataaatccctaatacctagctaagaagcctatctcacatggtataagcatacagttaaaaataaaaaaacacgactacatattcaac |
7010347 |
T |
|
| Q |
505 |
aaacaagcatttgatc |
520 |
Q |
| |
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||| |||||||||||| |
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| T |
7010346 |
aaataagcatttgatc |
7010331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 210 - 520
Target Start/End: Complemental strand, 7025998 - 7025689
Alignment:
| Q |
210 |
gtaagcctgcaggaattttctggtgcagactgctttggacataaggttgataggttgacttatg--atccttgttagggattctagctgcaccaaattat |
307 |
Q |
| |
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|||| ||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7025998 |
gtaatcctgctgggattttctggtgcagactgctttggacataaggctgataggaggacttatataatccttgttagggattctagctgcaccaaattat |
7025899 |
T |
|
| Q |
308 |
tggtgttcaaagaaacagtcag-ttgtggccttctctttttgggagactgagtacataattaggtcgattgcaagaatttaatctcatctcacacacggt |
406 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||||| ||||| |||||||||||||| |
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| T |
7025898 |
tggtgttcaaaggaacagtcagcttgtggccttctatttttgggagactgagtacataattgggttgaatgcaag-----aatctaatctcacacacggt |
7025804 |
T |
|
| Q |
407 |
tgctaattgattaataaatccccaatacctagctaagaagcctatctcacatggtcgatgcatacaattaagaat-aaaaaaca-tactacatattcaac |
504 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||| ||| |||||||| |||||||||||||| |
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| T |
7025803 |
tgctaattga-taataaatccctaatacctagctaagaagcctatctcacatggtataagcatacagttaaaaataaaaaaacacgactacatattcaac |
7025705 |
T |
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| Q |
505 |
aaacaagcatttgatc |
520 |
Q |
| |
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||| |||||||||||| |
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| T |
7025704 |
aaataagcatttgatc |
7025689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 210 - 520
Target Start/End: Complemental strand, 7056484 - 7056179
Alignment:
| Q |
210 |
gtaagcctgcaggaattttctggtgcagactgctttggacataaggttgataggttgacttatgatccttgttagggattctagctgcaccaaattattg |
309 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7056484 |
gtaagactgctgggattttctggtgcagactgctttggacataaggctgataggaggacttatgatccttgttagggattctagctgcaccaaattattg |
7056385 |
T |
|
| Q |
310 |
gtgttcaaagaaacagtcag-ttgtggccttctctttttgggagactgagtacataattaggtcgattgcaagaatttaatctcatctcacacacggttg |
408 |
Q |
| |
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||||| | || ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| || |||||| ||||| |||||||||||||||| |
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| T |
7056384 |
gtgttaataggaacagtcagtttgtggcct--tctttttgggatactgagtacataattaggttgaatgcaag-----aatctaatctcacacacggttg |
7056292 |
T |
|
| Q |
409 |
ctaattgattaataaatccccaatacctagctaagaagcctatctcacatggtcgatgcatacaattaagaat-aaaaaaca-tactacatattcaacaa |
506 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||| |||| | ||||||| ||| ||| |||||||| |||||||||||||||| |
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| T |
7056291 |
ctaattga-taataaatccctaatacctagctaagaagcctatctcacgtggtataagcatacagataaaaataaaaaaacacgactacatattcaacaa |
7056193 |
T |
|
| Q |
507 |
acaagcatttgatc |
520 |
Q |
| |
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| |||||||||||| |
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|
| T |
7056192 |
ataagcatttgatc |
7056179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 7010737 - 7010708
Alignment:
| Q |
142 |
agaaggtctcacctgatggatgccaaaaga |
171 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
7010737 |
agaaggtctcacctgatggatgccaaaaga |
7010708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 7026095 - 7026066
Alignment:
| Q |
142 |
agaaggtctcacctgatggatgccaaaaga |
171 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
7026095 |
agaaggtctcacctgatggatgccaaaaga |
7026066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 7056581 - 7056552
Alignment:
| Q |
142 |
agaaggtctcacctgatggatgccaaaaga |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
7056581 |
agaaggtctcacctgatggatgccaaaaga |
7056552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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