View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_low_6 (Length: 491)
Name: NF1883_low_6
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 41464064 - 41463580
Alignment:
| Q |
1 |
ttggcaagattaatgtcactattggtgacaataccaaataccaataatttagacaaacccaaaatccgttgacaaacatgaagactcccaatcccaaact |
100 |
Q |
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| T |
41464064 |
ttggcaagattaatgtcactattggtgacaataccaaataccaataatttagacaaacccaaaatccgttgacaaacatgaagactcccaatcccaaact |
41463965 |
T |
|
| Q |
101 |
catcctaatttgtttccttttcctcttcaaccttaatcaaacacaagtaatgtcactggcaaccattgaaacatgcttagacactgtttgccacatgaat |
200 |
Q |
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| T |
41463964 |
catcctaatttgtttccttttcctcttcaaccttaatcaaacacaagtaatgtcactagcaaccatagaaacatgcttagacactgtttgccacatgaat |
41463865 |
T |
|
| Q |
201 |
gaaccactaatccgattcccgttccatatagaagaaaaacaaacaaatacatgtggataccctgggttcaaagaattatgcaatgaaagtgnnnnnnncc |
300 |
Q |
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| T |
41463864 |
gaaccactaatccgattcccgttccatatagaagaaaaacaaacaaatacatgtggataccctgggttcaaagtattatgcaatgaaagtgaaaaaaatc |
41463765 |
T |
|
| Q |
301 |
aaacactccttaatctaccttatatggaaaatcttagtatccaaaaaataaactatgccaaacaagaactttttgtgaatgatcccaataactgtctccc |
400 |
Q |
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| T |
41463764 |
aaacactccttaatctaccttatatggaaaatcttagtatccaaaaaataaactatgccaaacaagaactttttgtgaatgatcccaataactgtctccc |
41463665 |
T |
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| Q |
401 |
aaaacaacttctctcactcaacctctctacctctccttttgatgccgtttactatcaacaatttaccttttttaactgttcatac |
485 |
Q |
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| T |
41463664 |
aaaacaacttctctcactcaacctctctacctctccttttgatgccgtttactatcaacaatttaccttttttaactgttcatac |
41463580 |
T |
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