View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883_low_7 (Length: 465)
Name: NF1883_low_7
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883_low_7 |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: scaffold0726 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 182 - 451
Target Start/End: Original strand, 6464 - 6724
Alignment:
| Q |
182 |
tctaatatttattacccgaaatcaagaaaataaaataacagaggaagaggattnnnnnnnn--tctgattttaaaatctaagagcaaaaacaatccttaa |
279 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
6464 |
tctaatatttattaccgcaaatcaagaacataaaataatagaggaagaggattaaaaaaaaaatctgatttttaaatctaagagcaaaaacaatccttaa |
6563 |
T |
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| Q |
280 |
aaataacctaatctttagatctgcagattaagaaaataatagaatagaagagcggaaac-nnnnnnnntacccgaacagaaatccgtctgaggaggacaa |
378 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||| |
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| T |
6564 |
aaataacctaatctttagttctgcagattaagaaaataatagaatagaagagcggaaacaaaaaaaaatacccaaacaaaaatccggctgaggaggacaa |
6663 |
T |
|
| Q |
379 |
taaacagatcaaggagtgaggggggagagagaagaggaagtggtggctgacaggtgattagaatggggtattt |
451 |
Q |
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||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
6664 |
taaacagatcaaggagt-----------gagaaga-gaagtggcggctgacaggtgattagaatggggtattt |
6724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 182 - 337
Target Start/End: Complemental strand, 24994995 - 24994840
Alignment:
| Q |
182 |
tctaatatttattacccgaaatcaagaaaataaaataacagaggaagaggattnnnnnnnntctgattttaaaatctaagagcaaaaacaatccttaaaa |
281 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
24994995 |
tctaatatttattaccgcaaatcaagaaaataaaataacagaggaagaggattaaaaaaaatctgatttttaaatctaagagcaaaaacaatccttaaaa |
24994896 |
T |
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| Q |
282 |
ataacctaatctttagatctgcagattaagaaaataatagaatagaagagcggaaa |
337 |
Q |
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| T |
24994895 |
ataacctaatctttagatctgcagattaagaaaataatagaatagaagagcggaaa |
24994840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 24754393 - 24754546
Alignment:
| Q |
184 |
taatatttattacccgaaatcaagaaaataaaataacagaggaagaggattnnnnnnnn-tctgattttaaaatctaagagcaaaaacaatccttaaaaa |
282 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||| ||||| |
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| T |
24754393 |
taatatttattactgcaaatcaagaaaataaaataacagaggaagaggattaaaaaacaatctaatttttaaatctaagagcgaaaacaatagcgaaaaa |
24754492 |
T |
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| Q |
283 |
t---aacctaatctttagatctgcagattaagaaaataatagaatagaagagcg |
333 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24754493 |
agaaaaaaaaatctttagatctgcagattaagaatataatagaatagaagagcg |
24754546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 24763390 - 24763543
Alignment:
| Q |
184 |
taatatttattacccgaaatcaagaaaataaaataacagaggaagaggattnnnnnnnn-tctgattttaaaatctaagagcaaaaacaatccttaaaaa |
282 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |||||||| ||||| |
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| T |
24763390 |
taatatttattactgcaaatcaagaaaataaaataacagaggaagaggattaaaaaacaatctaatttttaaatctaagagcgaaaacaatagcgaaaaa |
24763489 |
T |
|
| Q |
283 |
t---aacctaatctttagatctgcagattaagaaaataatagaatagaagagcg |
333 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24763490 |
agaaaaaaaaatctttagatctgcagattaagaatataatagaatagaagagcg |
24763543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 24758032 - 24758082
Alignment:
| Q |
184 |
taatatttattacccgaaatcaagaaaataaaataacagaggaagaggatt |
234 |
Q |
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| T |
24758032 |
taatatttattactgcaaatcaagaaaataaaataacagaggaagaggatt |
24758082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 24767029 - 24767079
Alignment:
| Q |
184 |
taatatttattacccgaaatcaagaaaataaaataacagaggaagaggatt |
234 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24767029 |
taatatttattactgcaaatcaagaaaataaaataacagaggaagaggatt |
24767079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 24754579 - 24754642
Alignment:
| Q |
382 |
acagatcaaggagtgaggggggagagagaagaggaagtggtggctgacaggtgattagaatggg |
445 |
Q |
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||||||| | |||||||||| ||||||||||||||||||||||||| |||| |||||||||| |
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| T |
24754579 |
acagatccaagagtgaggggtgagagagaagaggaagtggtggctggtgggtggttagaatggg |
24754642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 24763576 - 24763639
Alignment:
| Q |
382 |
acagatcaaggagtgaggggggagagagaagaggaagtggtggctgacaggtgattagaatggg |
445 |
Q |
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||||||| | |||||||||| ||||||||||||||||||||||||| |||| |||||||||| |
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| T |
24763576 |
acagatccaagagtgaggggtgagagagaagaggaagtggtggctggtgggtggttagaatggg |
24763639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 24994810 - 24994754
Alignment:
| Q |
400 |
ggggagagagaagaggaagtggtggctgac-----aggtgattagaatggggtattt |
451 |
Q |
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| T |
24994810 |
ggggagaaagaagaggaagtggtggctgacagtgaaggtgattagaatggggtattt |
24994754 |
T |
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