View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884-Insertion-1 (Length: 922)
Name: NF1884-Insertion-1
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 49818829 - 49819294
Alignment:
| Q |
8 |
agtatttcttcaagcaatgctaacatcatggccaagattgtggagataactgcatgttgaattcaagacaaagaagactaactttttccaaatttaaaat |
107 |
Q |
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| T |
49818829 |
agtatttcttcaagcaatgctaacatcatggccaagattgtggagataactgcatgttgaattcaagacaaagaagactaactttttccaaatttaaaat |
49818928 |
T |
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| Q |
108 |
agacacagtatggtacgggctcaatctgtttttcgttacaagtggaacaaccatatgacgtggaaaaagactagaaccaattgacatcaatagcttttaa |
207 |
Q |
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| T |
49818929 |
agacacagtatggtacgggctcaatctgtttttcgttacaagtggaacaaccatatgacgtggaaaaagactagaac-aattgacatcaatagcttttaa |
49819027 |
T |
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| Q |
208 |
gagtcttacataaaactagcaaggcttataagtcgactgtgtagtgcatcggttaggttcaatccaaattttaagatgattttagagtccatcgaaaatt |
307 |
Q |
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| T |
49819028 |
gagtcttacataaaactagcaaggcttataagccgactgtgtagtgcatccgttaggttcaattcaaattttaagatgattttggagtccatctaaaatt |
49819127 |
T |
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| Q |
308 |
tgttggatcatccactatcatatcaccattattgtgccacccgagtacactcatgtcactccatatgtccaataaattatgtgcacgagtgagtttgttg |
407 |
Q |
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| T |
49819128 |
tgttggatcatccactatcatatcaccattattgtgccactcgagtacacttatgtcactccatatgtccaataaattatgtgcacgagtgagtttgttg |
49819227 |
T |
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| Q |
408 |
agagttctactttagaagataatggttggccgatgtacatgtgtttataagtggagatgtttttaagtcaatt |
480 |
Q |
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| T |
49819228 |
agagttctactttgaaagataatggttggccg------atgtgtttataagtggagacgtttttaagtcaatt |
49819294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 506 - 922
Target Start/End: Original strand, 49819291 - 49819719
Alignment:
| Q |
506 |
aattctaagaataggtagtatgcactatgcagtatgaatgttcttttat--gctcagaaacgcacctagttgatggctannnnnnnnnn--------cct |
595 |
Q |
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| T |
49819291 |
aattctaagaataggtagtatgcactatgcagtatgaatgttcttttatatgctcagaaacgcacctagttgatggctattttttttatttttttttcct |
49819390 |
T |
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| Q |
596 |
gtatggaggttaaatgaaactttgcatcataaaagttggatggctatatatggactgttatgaatacctgattttctactaacgtgtgattgttggaatt |
695 |
Q |
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| T |
49819391 |
gtatggaggttaaatgaaactttgcatcatagaagttggatggctatatatggactgttatgaatacttgattttctactaacgtgtgattgttggaatt |
49819490 |
T |
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| Q |
696 |
aatggcaaagatatatagtg--atagtgaatgacctatgcagcataatgcattctttttattattttggat--agagaggacgcatcttttacttattat |
791 |
Q |
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| T |
49819491 |
aatggcaaagatatatagtgatatagtgaatgacatatgcagcataatgcaatatttttattattttggatagagagaggacgcatcttttac---ttat |
49819587 |
T |
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| Q |
792 |
tattatgcgtgtgtgaaattgtaagctaattgc-aatacttttgtttgggctggaatggaatattttgggcttgcaagtgtaatt-cattattgacttgc |
889 |
Q |
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| T |
49819588 |
tattatgcgtgtgtgaaattgtaagctaattgcaaatacttttg-ttgggctgg-atggaatatttttggcttgcaagtgtaattccattattgacttgc |
49819685 |
T |
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| Q |
890 |
atattcttttgtttta-tgcataatgcatgcgtt |
922 |
Q |
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| T |
49819686 |
atattcttttgttttattgcataatgcatgcgtt |
49819719 |
T |
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