View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884-Insertion-11 (Length: 227)
Name: NF1884-Insertion-11
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 42232665 - 42232564
Alignment:
| Q |
98 |
atttactgtcatattggttcctatcnnnnnnnttattgtcattattgaaaaactattttgattaatagagtacaccatcaaatattattttgaaatttcg |
197 |
Q |
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| T |
42232665 |
atttaatgtcatatcggttcctatcaaaaaaattattgtcattattgaaaaactattttgattaacagagtatacgatcaaatattattttgaaatttcg |
42232566 |
T |
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| Q |
198 |
at |
199 |
Q |
| |
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|| |
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| T |
42232565 |
at |
42232564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 42232819 - 42232760
Alignment:
| Q |
8 |
attacatccacgcaaatcaaatttctaacggtcttgtgcaacactatacaagcatatttt |
67 |
Q |
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| T |
42232819 |
attacatccacgcaaatcaaatttctaacggtcttgtgcaacactttacaagcatatttt |
42232760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 42232728 - 42232684
Alignment:
| Q |
67 |
taagatgaattttcggtccttcaatataattatttactgtcatat |
111 |
Q |
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| T |
42232728 |
taagatgaatttttggtccttcaatatagttatttactatcatat |
42232684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 34937899 - 34937853
Alignment:
| Q |
149 |
actattttgattaatagagtacaccatcaaatattattttgaaattt |
195 |
Q |
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| T |
34937899 |
actattttgattaacaaagtacacaatcaaaaattattttgaaattt |
34937853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 27223786 - 27223741
Alignment:
| Q |
151 |
tattttgattaatagagtacaccatcaaatattattttgaaatttc |
196 |
Q |
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|||||||||||| ||||| ||| ||||||| ||||||||||||||| |
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| T |
27223786 |
tattttgattaacagagtgcacaatcaaatgttattttgaaatttc |
27223741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 257913 - 257868
Alignment:
| Q |
151 |
tattttgattaatagagtacaccatcaaatattattttgaaatttc |
196 |
Q |
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|||||||||||| ||||| ||| ||||||| ||||||||||||||| |
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| T |
257913 |
tattttgattaacagagtgcacaatcaaatgttattttgaaatttc |
257868 |
T |
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