View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1884-Insertion-2 (Length: 823)

Name: NF1884-Insertion-2
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1884-Insertion-2
NF1884-Insertion-2
[»] chr4 (2 HSPs)
chr4 (7-823)||(22084834-22085653)
chr4 (16-136)||(30518166-30518286)
[»] chr2 (3 HSPs)
chr2 (14-156)||(40040775-40040917)
chr2 (16-139)||(38895872-38895995)
chr2 (18-94)||(42898288-42898364)
[»] chr7 (2 HSPs)
chr7 (7-154)||(40749369-40749516)
chr7 (21-136)||(44150818-44150933)
[»] chr8 (3 HSPs)
chr8 (18-136)||(5788741-5788859)
chr8 (16-153)||(33186723-33186860)
chr8 (658-715)||(5787997-5788054)
[»] chr1 (9 HSPs)
chr1 (17-139)||(12804526-12804648)
chr1 (14-156)||(28496104-28496246)
chr1 (16-155)||(36989328-36989467)
chr1 (17-154)||(12774926-12775063)
chr1 (27-139)||(42287116-42287228)
chr1 (7-156)||(31644056-31644205)
chr1 (27-136)||(4160376-4160485)
chr1 (21-154)||(50788819-50788952)
chr1 (655-715)||(31641897-31641957)
[»] chr3 (1 HSPs)
chr3 (16-140)||(52248369-52248493)


Alignment Details
Target: chr4 (Bit Score: 772; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 7 - 823
Target Start/End: Complemental strand, 22085653 - 22084834
Alignment:
7 aacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22085653 aacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttg 22085554  T
107 tggaactagagagtacaaatgtgattgtggcacaattttctccaggtatatactatatatttactatctttcgccatagcagtcactactggcaccgttg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22085553 tggaactagagagtacaaatgtgattgtggcacaattttctccaggtatatactatatatttactatctttcgccatagcagtcactactggcaccgttg 22085454  T
207 gatttgagatagaaacaatttacattttctaaactcggatccagtgactccgtagtggctgcaatatttggaagctatagaaaattgaaacactaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
22085453 gatttgagatagaaacaatttacattttctaaactcggatccagtgactccgtagtggctgcaatatttggaagcaatagaaaattgaaacactaaaaga 22085354  T
307 atatagaaatcttggtgatcaattagtttaaacgtttagtctatatccaacaattagcatttaaatttcaaatgtccttaatttcatgattttaatggcg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22085353 atatagaaatcttggtgatcaattagtttaaacgtttagtctatatccaacaattagcatttaaatttcaaatgtccttaatttcatgattttaatggcg 22085254  T
407 gtcgcagttgcggccaatgcaaccgaaaaagtagttttgatatggttgggtagatctcaaaatcttttatattgctgcaatttaaatgccttcttaaatc 506  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22085253 gttgcagttgcggccaatgcaaccgaaaaagaagttttgatatggttgggtagatctcaaaatcttttatattgctgcaatttaaatgccttcttaaatc 22085154  T
507 attaagtttgattaatttaatggattggatgcatgtgctagatataattgaaggaatgtttgtatggaatagataataaatgaggaatgttaattgatgt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
22085153 attaagtttgattaatttaatggattggatgcatgtgctagatataattgaaggaatgtttgtatggaataaataataaatgaggaatgttaattgatgt 22085054  T
607 tcaactaattcatttatgtatttatttattatgtttgctaacaaatca-gaaggacagctttataacacatagagctttttgtgatgcattaactgaaca 705  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
22085053 tcaactaattcatttatgtatttatttattatgtgtgctaacaaatcaggaaggacagcttcataacacatagagctttttgtgatgcattaactgaaca 22084954  T
706 aagtgc-aagataacaacggttccggcagctttaagcaactttcggaatgatcatttgacgaatactcaaactccaagaattcctcata-ttttcctggt 803  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
22084953 aagtgcaaagataacaacggttccggcagctttaagcaactttcggaatgatcatttgacgaatactcaaactccaagaattcctcatatttttcctggt 22084854  T
804 tttcagtttcactcggaatt 823  Q
    ||||||||||||||||||||    
22084853 tttcagtttcactcggaatt 22084834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 30518286 - 30518166
Alignment:
16 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 115  Q
    ||||||| |||||||| ||||||||||||||||| ||||| || ||    ||||| ||||| || ||||||||||||||    || |  ||||| |||||    
30518286 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 30518187  T
116 agagtacaaatgtgattgtgg 136  Q
    ||| ||||||||||| |||||    
30518186 agaatacaaatgtgactgtgg 30518166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 40040775 - 40040917
Alignment:
14 tagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaact 113  Q
    ||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||    
40040775 tagtagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcact 40040874  T
114 agagagtacaaatgtgattgtggcacaattttctccaggtata 156  Q
    | |||||||| |||||||||||||||| | |||||||||||||    
40040875 aaagagtacagatgtgattgtggcacactattctccaggtata 40040917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 38895995 - 38895872
Alignment:
16 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 115  Q
    |||| ||||| ||||||||||||||||||||||| ||||| || ||    ||||| |||||||| ||||||||||| ||    |||| |||||| |||||    
38895995 gtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactag 38895896  T
116 agagtacaaatgtgattgtggcac 139  Q
    ||| ||||||||||||||||||||    
38895895 agaatacaaatgtgattgtggcac 38895872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 42898288 - 42898364
Alignment:
18 agaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctca 94  Q
    ||||| || ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || |||||||||||    
42898288 agaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctca 42898364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 40749369 - 40749516
Alignment:
7 aacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttg 106  Q
    |||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |  || | |||    
40749369 aacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttg 40749468  T
107 tggaactagagagtacaaatgtgattgtggcacaattttctccaggta 154  Q
    ||| |||||||| || || ||||||||||| ||| | ||||| |||||    
40749469 tggtactagagaatataagtgtgattgtggtacactcttctcaaggta 40749516  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 44150933 - 44150818
Alignment:
21 aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagt 120  Q
    ||||||||||||||||| ||||| ||||| ||||| || || | |||||| |||||||| |||||||| |||||    || | |||||| ||||| || |    
44150933 aaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaat 44150834  T
121 acaaatgtgattgtgg 136  Q
    ||||||||||||||||    
44150833 acaaatgtgattgtgg 44150818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 5788859 - 5788741
Alignment:
18 agaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagag 117  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||| | |||||| |||||||    
5788859 agaaagcatggtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagag 5788760  T
118 agtacaaatgtgattgtgg 136  Q
    | || | |||||| |||||    
5788759 aatatagatgtgactgtgg 5788741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 33186723 - 33186860
Alignment:
16 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 115  Q
    ||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||    ||  |||||||  ||||    
33186723 gtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctag 33186822  T
116 agagtacaaatgtgattgtggcacaattttctccaggt 153  Q
    |||||| |||||||||||||| ||  |||| |||||||    
33186823 agagtataaatgtgattgtggaaccgttttttccaggt 33186860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 715
Target Start/End: Complemental strand, 5788054 - 5787997
Alignment:
658 ggacagctttataacacatagagctttttgtgatgcattaactgaacaaagtgcaaga 715  Q
    |||||| || |||||||||||||| ||||||||||||||| | ||| | |||||||||    
5788054 ggacagtttcataacacatagagcattttgtgatgcattagcagaagagagtgcaaga 5787997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 12804648 - 12804526
Alignment:
17 tagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactaga 116  Q
    |||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||   |||| |||||| |||||     
12804648 tagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagg 12804549  T
117 gagtacaaatgtgattgtggcac 139  Q
    ||||| | |||||| ||||||||    
12804548 gagtatagatgtgactgtggcac 12804526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 28496246 - 28496104
Alignment:
14 tagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaact 113  Q
    ||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||  || |  ||||| ||     
28496246 tagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtaca 28496147  T
114 agagagtacaaatgtgattgtggcacaattttctccaggtata 156  Q
    ||||| ||||||||||| ||||||||  | ||||| |||||||    
28496146 agagaatacaaatgtgactgtggcaccctcttctcaaggtata 28496104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 36989328 - 36989467
Alignment:
16 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 115  Q
    ||||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||  ||| || ||||| || ||    
36989328 gtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaag 36989427  T
116 agagtacaaatgtgattgtggcacaattttctccaggtat 155  Q
     || ||||||||||| ||||| || || || |||||||||    
36989428 ggaatacaaatgtgactgtggaaccatcttttccaggtat 36989467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 12774926 - 12775063
Alignment:
17 tagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactaga 116  Q
    |||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||   || | |||||| ||||      
12774926 tagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaag 12775025  T
117 gagtacaaatgtgattgtggcacaattttctccaggta 154  Q
    ||||| | |||||| ||||||||  | |||||||||||    
12775026 gagtatagatgtgactgtggcactctcttctccaggta 12775063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 42287116 - 42287228
Alignment:
27 ggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaat 126  Q
    ||||||||||||||||| |||||||| || || ||||||||||| ||||||||||| |||||||| |||   |||| |||||| |||||||| || | ||    
42287116 ggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagat 42287215  T
127 gtgattgtggcac 139  Q
    |||||||||||||    
42287216 gtgattgtggcac 42287228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 31644205 - 31644056
Alignment:
7 aacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttg 106  Q
    |||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||||  ||||| ||||| |||||||||||||||||    || |  ||    
31644205 aacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctg 31644106  T
107 tggaactagagagtacaaatgtgattgtggcacaattttctccaggtata 156  Q
    ||| ||| |||| || |||||||||||||| ||  |||| ||||||||||    
31644105 tggtactcgagaatataaatgtgattgtggtacccttttttccaggtata 31644056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 4160376 - 4160485
Alignment:
27 ggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaat 126  Q
    ||||||||||||||||||||||| || ||||| ||   |||||||||||| || |||||||||||||||  ||| |||||||| |||| |||||| || |    
4160376 ggtgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagt 4160475  T
127 gtgattgtgg 136  Q
    |||| |||||    
4160476 gtgactgtgg 4160485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 50788952 - 50788819
Alignment:
21 aaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagt 120  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||||| || |||   |||| |||||| || ||||| |    
50788952 aaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaat 50788853  T
121 acaaatgtgattgtggcacaattttctccaggta 154  Q
    | |  ||||| ||||||||  | |||||||||||    
50788852 ataggtgtgactgtggcactctcttctccaggta 50788819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 655 - 715
Target Start/End: Complemental strand, 31641957 - 31641897
Alignment:
655 gaaggacagctttataacacatagagctttttgtgatgcattaactgaacaaagtgcaaga 715  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||  ||||| |||||||||||    
31641957 gaaggatagcttcataactcatagagcattttgtgatgcattggctgaagaaagtgcaaga 31641897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 52248493 - 52248369
Alignment:
16 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 115  Q
    ||||||| |||||||||||||| ||||| ||||||   ||||| || ||||| || |   ||| ||||| ||||| |||||  ||||  |||||||||||    
52248493 gtagaaagcatggtgagaagaaatggaaatgtgaacgttgttctaaaaaatacgctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactag 52248394  T
116 agagtacaaatgtgattgtggcaca 140  Q
    |||||| ||||||||||||||||||    
52248393 agagtataaatgtgattgtggcaca 52248369  T

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