View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884-Insertion-3 (Length: 833)
Name: NF1884-Insertion-3
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 8 - 825
Target Start/End: Complemental strand, 30435570 - 30434754
Alignment:
| Q |
8 |
ggtggtgtgttgctggagacggtgcaaatgaaaaattgttatcaatttcaagtgatggtttgttatatcaagtaagatttcttaaattaaaagattacta |
107 |
Q |
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| T |
30435570 |
ggtggcgtgttactggagacggtgcaaatgaaaaattgttatccatttcaagtgatggtttgttatatcaagtaagatttcttaaataaaaagattacta |
30435471 |
T |
|
| Q |
108 |
ctcttttcttgagttcatagacaacctcttccttttgagtttgagttccaacttctccatattcatatgaaattaaataacatcctactcctggatgatg |
207 |
Q |
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| T |
30435470 |
ctcttttcttgagttcatagacaacctcttccttttgagtttgagttccaacttctccatattcatatgaaattaaataacatcctaatcctggatgatg |
30435371 |
T |
|
| Q |
208 |
tcaacaatgtgaggtatcatggcctttatgatgtagttaatgaagtggtagagtttccacacgagagaagttgaagtaattggtgatataaatttaaaca |
307 |
Q |
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| T |
30435370 |
tcaacaatgtgaggtatcatggcctctatgatgtagttaatgaagtggtagagtttccacacgagagaggttgaagtaattggtgatataaatttaaaca |
30435271 |
T |
|
| Q |
308 |
tgtttgattggcattttatatacatgactttttggttatagcttttgtttgtatctttgccattcacctgccttatgtagctatttgaatccatatcttc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30435270 |
tgtttgattggcattttatatacatgactttttggttatagcttttgtttgtatctttgccattcacctgccttatgtagctatttgaatccatatattc |
30435171 |
T |
|
| Q |
408 |
tgccttaacctactgtagtattgtaggttcatgcagttaaacatatgattagatgcaagtgttcaatttgctatgttttttatgtaattttctacatctt |
507 |
Q |
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| T |
30435170 |
tgccttaacctactgtagtattgtaggttcatgcagttaaacatatgattagatgcaggtgttcaatttgctatgttttttatctaattttctacatctt |
30435071 |
T |
|
| Q |
508 |
gctatctttatatggatgatttgtgctttagtagataagaacttataaaggactatgttcattgaaaggagggcttctcattgactatatgtatatggac |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30435070 |
gctatctttatatggatgatttgtgctttagtagataagaacttaaaaaggactatgttcattgaaaggagggcttctcattgactatatgtatatggac |
30434971 |
T |
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| Q |
608 |
actgcatctaactgtgaaattattttttatcagaatttgtaagcttctaaagtgtaattatttgattttgnnnnnnnaactatttgacaaacgtttttgt |
707 |
Q |
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| T |
30434970 |
actgcatctaactgtgaaattattttttatcagaatttgtaagcttctaaagtgtaattatttgattttgtttttttaactatttgacaaacgtttttgt |
30434871 |
T |
|
| Q |
708 |
tatgctagaattgcatacatttgtctaataatccaattccaaatttttgtagtgaataatatgcattgggttannnnnnnaaactttgattttgatcctt |
807 |
Q |
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| T |
30434870 |
tatgctagaatttcatacatttgtctaataatccaattccaaatttttgtagtgaataatatgcatt-ggttatttttttaaactttgattctgatcctt |
30434772 |
T |
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| Q |
808 |
gctagccttgtccagata |
825 |
Q |
| |
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|||||||||||||||||| |
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| T |
30434771 |
gctagccttgtccagata |
30434754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 62 - 438
Target Start/End: Complemental strand, 47765306 - 47764931
Alignment:
| Q |
62 |
atggtttgttatatcaagtaagatttcttaaattaaaagattactactcttttcttgagttcatagacaacctcttccttttgagtttgagttccaactt |
161 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47765306 |
atggtttgttatattaagtaagatttcttaaatttaaagattactactcttttcttgagttcatagacaacctcttccttttgagtttgagttccaactt |
47765207 |
T |
|
| Q |
162 |
ctccatattcatatgaaattaaataacatcctactcctggatgatgtcaacaatgtgaggtatcatggcctttatgatgtagttaatgaagtggtagagt |
261 |
Q |
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|||||| || || |||||||||||||| ||| || ||||||||| |||| || |||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
47765206 |
ctccat--tcgtacgaaattaaataacaagctaatcgtggatgatgccaactatctgaggtatcatggcctctatgatgtagttaatgaagtggtaaagt |
47765109 |
T |
|
| Q |
262 |
ttccacacgagagaagttgaagtaattggtgatataaatttaaacatgtttgattggcattttatatacatgactttttggttatagcttttgtttgta- |
360 |
Q |
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|||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| |
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| T |
47765108 |
ttccacacgagagaggttgatgtaattgatgatataaatttaaacatgtttgattggcattttatatacatgaatttttggttatagcttttttatgtat |
47765009 |
T |
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| Q |
361 |
tctttgccattcacctgccttatgtagctatttgaatccatatcttctgccttaacctactgtagtattgtaggttca |
438 |
Q |
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| ||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||| |
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| T |
47765008 |
tttttgccattcacctgccttatatagttatttgaattcatgtcttctgccttaacctattgtagtattgtaggttca |
47764931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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