View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1884-Insertion-4 (Length: 882)

Name: NF1884-Insertion-4
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1884-Insertion-4
NF1884-Insertion-4
[»] chr1 (20 HSPs)
chr1 (7-875)||(28239198-28240065)
chr1 (557-731)||(28231648-28231819)
chr1 (53-168)||(28232264-28232384)
chr1 (32-160)||(47569833-47569968)
chr1 (255-477)||(28231896-28232125)
chr1 (32-152)||(24621003-24621130)
chr1 (599-689)||(24621575-24621665)
chr1 (32-105)||(21158359-21158433)
chr1 (599-689)||(23787210-23787300)
chr1 (254-316)||(47569729-47569791)
chr1 (599-684)||(28326517-28326602)
chr1 (574-645)||(6326514-6326585)
chr1 (239-319)||(28326857-28326938)
chr1 (599-683)||(47569320-47569404)
chr1 (53-102)||(28327085-28327134)
chr1 (426-476)||(47569524-47569574)
chr1 (242-307)||(12541139-12541204)
chr1 (571-638)||(14508590-14508657)
chr1 (250-323)||(14508381-14508454)
chr1 (126-155)||(28327043-28327072)
[»] chr4 (1 HSPs)
chr4 (53-105)||(1637699-1637751)
[»] chr3 (1 HSPs)
chr3 (592-692)||(47924700-47924800)
[»] chr5 (1 HSPs)
chr5 (599-638)||(1718125-1718164)
[»] chr2 (1 HSPs)
chr2 (611-642)||(16375422-16375453)
[»] chr6 (1 HSPs)
chr6 (241-298)||(384136-384193)


Alignment Details
Target: chr1 (Bit Score: 737; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 7 - 875
Target Start/End: Complemental strand, 28240065 - 28239198
Alignment:
7 acatctcatctcagttttgagcatgtataggagaaatgtatcagctcattgcagactacaatgctataattgattcaggctttcaagaaaatgtcacaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
28240065 acatctcatctcagttttgagcatgtataggagaaatgtataagctcattgcagactacaatgctataattgattcagactttcaagaaaatgtcacaaa 28239966  T
107 caatcataggcatatttatataatcaaagagcataaaacaagaaacatgagtatctcctatcacatcccgacattattaaaaataaattaaacacaatta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
28239965 caatcataggcatatttatataatcaaagagcataaaacaagaaacatgagtatctcctatcacatccagacattattaaaaataaattaaacacaatta 28239866  T
207 ttgtccactcactgggaaactaatcagctaatgaatagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatctac 306  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28239865 ttgtccactcactgggagactaatcagctaatgaatagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatctac 28239766  T
307 attgcacaaacaagttcttttgtgccatccttgttgccatatatcttacacatgagagagaaagactctt---tattgtttcaccatcatcatcaactgg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||    
28239765 attgcacaaacaagttcttttgtgccatccttgttgccatatatcttacacatgagagagagagactctttattattgtttcaccatcatcatcaactgg 28239666  T
404 aacacaaccaacttgtctttcgatgctttaccaaacaatcccactataaatagtttgttgtagttcaatcataagaaataccgttaaactcgtaaggtac 503  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28239665 aacacaaccaacttgtctttcgatgttttaccaaacaatcccactataaatagtttgttgtagttcaatcataagaaataccgttaaactcgtaaggtac 28239566  T
504 ggaaagtagcagnnnnnnnnnnnnnnnnncaatcttattcatagggttgctttttgatccaccttggcctttgtatagtccatcataaactgagcgataa 603  Q
    ||||||||||||                 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28239565 ggaaagtagcagttttttgacctttttttcaatcttattcataaggttgctttttgatccaccttggcctttgtatagtccatcataaactgagcgataa 28239466  T
604 caagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaagtaggaggggttggag 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28239465 caagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaagtaggaggggttggag 28239366  T
704 aggccacggttcttgatgcctccaattctattattaataagtcaagtgcttgtttaaattgaccgatagcagatttcacgtctcgtttggcgccggtaac 803  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   || |||||||    
28239365 aggccgcggttcttgatgcctccaattctattattaataagtcaagtgcttctttaaattgaccgatagcagatttcacgtctcgtt---cggcggtaac 28239269  T
804 taaagtaggagggtagggttggtgagctggttcttaatgcctccaattctataaagaagtcaattgcttgtt 875  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
28239268 taaagtaggagggt-gggttggtgagccggttcttaatgcctccaattctataaagaagtcaattgcctgtt 28239198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 557 - 731
Target Start/End: Complemental strand, 28231819 - 28231648
Alignment:
557 ttgatccaccttggcctttgtatagtccatcataaactgagcgataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttct 656  Q
    ||||||||||||||| ||||||||||||||||  ||||||| | |||| |||||| |||||||||||||||||||||||||||| |||||| |||||| |    
28231819 ttgatccaccttggcttttgtatagtccatcaataactgagtggtaactagcaacgttaggtttgacaccaccttttatcatcatagctgctacactttt 28231720  T
657 agcagatttcacatctcgttcggtaactaaagtaggaggggttggagaggccacggttcttgatgcctccaattc 731  Q
    ||||||| |||| |||| ||||||||||||||||||| ||||||||||   || |||| |||||||||| |||||    
28231719 agcagatctcacctctccttcggtaactaaagtaggatgggttggaga---caaggtttttgatgcctcgaattc 28231648  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 28232384 - 28232264
Alignment:
53 cattgcagactacaatgctataattgattcaggctttcaagaaaatgtcacaa------acaatcataggcatatttatataatcaaagagcataaaaca 146  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||      |||| ||||||||||||||||||||||||||||||||||||    
28232384 cattgcagactacaatgctataactgattcaggctttcaagaaaatgtcacaaggagagacaa-cataggcatatttatataatcaaagagcataaaaca 28232286  T
147 agaaacatgagtatctcctatc 168  Q
    |||||||||  || ||||||||    
28232285 agaaacatggatacctcctatc 28232264  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 47569968 - 47569833
Alignment:
32 tataggagaaatgtatcagctc-attgcagactacaatgctataattgattcaggctttcaagaaaatgtcacaa------acaatcataggcatattta 124  Q
    |||||||||||||||||| ||| |||||| |||||||||||| || || ||||||||||||||||||||| ||||      |||||||||||| ||||||    
47569968 tataggagaaatgtatcaactccattgcaaactacaatgctaaaaatggttcaggctttcaagaaaatgtaacaagccaagacaatcataggcgtattta 47569869  T
125 tataatcaaagagcataaaacaagaaacatgagtat 160  Q
    |||||||||||||||||||| |||||||||| ||||    
47569868 tataatcaaagagcataaaataagaaacatgcgtat 47569833  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 255 - 477
Target Start/End: Complemental strand, 28232125 - 28231896
Alignment:
255 aaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatc----tacattgcacaaacaagttcttttgtgccatccttgttgccatatat 350  Q
    |||||||||||||  ||| || || ||| |||||||||||||| ||||     |||||| |||||||||||||||||||| ||||||| |||||||||||    
28232125 aaaagcaaaaacatggtcatttaactagaaaactagaaagcatttaattaatgtacatttcacaaacaagttcttttgtgacatccttattgccatatat 28232026  T
351 cttacaca-----tgagagagaaagactctttattgtttcaccatcatcatcaactggaacacaaccaacttgtctttcgatgctttaccaaacaatccc 445  Q
    ||||||||       | ||||| |||||| |||||||||   || ||||||||||| |||  |||||||||||||||| |||| || ||||||||  |||    
28232025 cttacacacacacacacagagagagactccttattgttt---cagcatcatcaactagaatgcaaccaacttgtctttggatgtttcaccaaacacgccc 28231929  T
446 actataaatagtttg-ttgtagttcaatcataa 477  Q
    ||| ||||||||||| |||| ||||||||||||    
28231928 actttaaatagtttgtttgttgttcaatcataa 28231896  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 24621003 - 24621130
Alignment:
32 tataggagaaatgtatcagctc-attgcagactacaatgctataattgattcaggctttcaagaaaatgtcacaa------acaatcataggcatattta 124  Q
    |||| |||||| |||||| ||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||      ||||||| |||| |||||     
24621003 tatatgagaaacgtatcaactccattgcaaactagaatgctaaaattgattcaggctttcaagaaaatgtcacaagccaagacaatcaaaggcgtatttt 24621102  T
125 tataatcaaagagcataaaacaagaaac 152  Q
    |||||||||||||||||||| |||||||    
24621103 tataatcaaagagcataaaataagaaac 24621130  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 599 - 689
Target Start/End: Original strand, 24621575 - 24621665
Alignment:
599 gataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaagt 689  Q
    ||||||||||||||||||||||||||||| |||||||||||| || |||  ||||| || |||||||||| ||| ||||||||||||||||    
24621575 gataacaagcaacattaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaagt 24621665  T

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Target: chr1; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 21158359 - 21158433
Alignment:
32 tataggagaaatgtatcagctc-attgcagactacaatgctataattgattcaggctttcaagaaaatgtcacaa 105  Q
    |||||||||||||||||| ||| || ||| || ||||||||||||||||||||||||||||||||||||||||||    
21158359 tataggagaaatgtatcaactccatcgcaaacgacaatgctataattgattcaggctttcaagaaaatgtcacaa 21158433  T

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Target: chr1; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 599 - 689
Target Start/End: Complemental strand, 23787300 - 23787210
Alignment:
599 gataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaagt 689  Q
    ||||||||||||||||||||||||||||| ||||||||| || || |||  ||||| || |||||||||| ||| ||||||||||||||||    
23787300 gataacaagcaacattaggtttgacaccagcttttatcaccaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaagt 23787210  T

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Target: chr1; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 47569791 - 47569729
Alignment:
254 taaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatctacattgcacaaa 316  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
47569791 taaaagcaaaaacatagtccttaaattagaaaactagaaagcatgtaatctacattccacaaa 47569729  T

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Target: chr1; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 599 - 684
Target Start/End: Complemental strand, 28326602 - 28326517
Alignment:
599 gataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaact 684  Q
    |||||| ||||||||||||| ||| ||||||||||||||| |||||| | |||||| ||||||||||||| |||| ||||||||||    
28326602 gataactagcaacattaggtctgagaccaccttttatcatgacagctactacacttttagcagatttcacctctctttcggtaact 28326517  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 574 - 645
Target Start/End: Original strand, 6326514 - 6326585
Alignment:
574 ttgtatagtccatcataaactgagcgataacaagcaacattaggtttgacaccaccttttatcatcacagct 645  Q
    ||||||| |||||||  ||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||    
6326514 ttgtatattccatcagcaactgagtgataactagcaacattaggtttgagaccgccttttatcatcacagct 6326585  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 28326938 - 28326857
Alignment:
239 gaatagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaact-agaaagcatgtaatctacattgcacaaacaa 319  Q
    |||||||||||||| ||||||||||| || ||||||| |||||||||||| | ||||||||||||||| ||| | |||||||    
28326938 gaatagaagtgcaactaaaagcaaaagcatagtcctttaattagcaaactaaaaaagcatgtaatctaaatttcgcaaacaa 28326857  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 599 - 683
Target Start/End: Complemental strand, 47569404 - 47569320
Alignment:
599 gataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaac 683  Q
    |||||| |||| ||||||||||||||| |||||||||||||| ||| ||  ||| | ||||||||||||| ||| ||||||||||    
47569404 gataactagcagcattaggtttgacactaccttttatcatcaaagcagctgcacatttagcagatttcacctcttgttcggtaac 47569320  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 28327134 - 28327085
Alignment:
53 cattgcagactacaatgctataattgattcaggctttcaagaaaatgtca 102  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||    
28327134 cattgcaaacaacaatgctagaattgattcaggctttcaagaaaatgtca 28327085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 47569574 - 47569524
Alignment:
426 atgctttaccaaacaatcccactataaatagtttgttgtagttcaatcata 476  Q
    |||||| ||||||||| |||||| ||||||||||||||| |||||||||||    
47569574 atgcttcaccaaacaagcccactttaaatagtttgttgttgttcaatcata 47569524  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 12541204 - 12541139
Alignment:
242 tagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatctaca 307  Q
    |||||||| || |||||||| || ||  ||||||||||||  ||||||||||||||||||||||||    
12541204 tagaagtgaaagtaaaagcagaagcatggtccttaaattaaaaaactagaaagcatgtaatctaca 12541139  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 638
Target Start/End: Original strand, 14508590 - 14508657
Alignment:
571 cctttgtatagtccatcataaactgagcgataacaagcaacattaggtttgacaccaccttttatcat 638  Q
    |||||||||||| |||||   || ||| || ||| ||||||| |||||||||||||||||||||||||    
14508590 cctttgtatagttcatcaatcaccgagtgaaaactagcaacaataggtttgacaccaccttttatcat 14508657  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 14508381 - 14508454
Alignment:
250 caattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatctacattgcacaaacaagttc 323  Q
    |||| |||||||||| || ||||||| |||||| ||| |||||||||||||| ||||  |  ||||||||||||    
14508381 caatgaaaagcaaaagcatagtcctttaattagaaaaatagaaagcatgtaaactactctcaacaaacaagttc 14508454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 28327072 - 28327043
Alignment:
126 ataatcaaagagcataaaacaagaaacatg 155  Q
    ||||||||||||||||||||||||||||||    
28327072 ataatcaaagagcataaaacaagaaacatg 28327043  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 1637751 - 1637699
Alignment:
53 cattgcagactacaatgctataattgattcaggctttcaagaaaatgtcacaa 105  Q
    ||||||| || |||||  |||||||||||||||||||||||||||||||||||    
1637751 cattgcaaacaacaattatataattgattcaggctttcaagaaaatgtcacaa 1637699  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 592 - 692
Target Start/End: Original strand, 47924700 - 47924800
Alignment:
592 actgagcgataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaagtag 691  Q
    |||||| ||||||  |||||||||||||||||||| | ||||| |||||||||  | ||| || |||||  ||| || |||| ||| |||||||||||||    
47924700 actgagtgataactggcaacattaggtttgacaccgcattttaccatcacagccactacagttttagcatctttaacctctccttcagtaactaaagtag 47924799  T
692 g 692  Q
    |    
47924800 g 47924800  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 638
Target Start/End: Complemental strand, 1718164 - 1718125
Alignment:
599 gataacaagcaacattaggtttgacaccaccttttatcat 638  Q
    |||||| ||||||| |||||||||||||||||||||||||    
1718164 gataaccagcaacaataggtttgacaccaccttttatcat 1718125  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 642
Target Start/End: Complemental strand, 16375453 - 16375422
Alignment:
611 cattaggtttgacaccaccttttatcatcaca 642  Q
    ||||||||||||||||||||||||||||||||    
16375453 cattaggtttgacaccaccttttatcatcaca 16375422  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 384136 - 384193
Alignment:
241 atagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatg 298  Q
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384136 atagaagtgcaactaaaagcagaagcatagtgcataaattagaaaactagaaagcatg 384193  T

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