View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884-Insertion-5 (Length: 749)
Name: NF1884-Insertion-5
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 683; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 7 - 745
Target Start/End: Complemental strand, 11730792 - 11730055
Alignment:
| Q |
7 |
attgttcaagttaagtagttgatctacaagctctttcttctctttttcatgaaaccctcccaaatcaaatctagcagcaaatccagaaatgttgttagca |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11730792 |
attgttcaagttaagtagttgatctacaagctctttcttctctttttcatgaaaccctcccaaatcaaatctagcagcaaatccagaaatgttgttagca |
11730693 |
T |
|
| Q |
107 |
accatgttagcaacatggctgccacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaaattctcgagatccttct |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11730692 |
accatgttagcaacatggctgccacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaaattctcaagatccttct |
11730593 |
T |
|
| Q |
207 |
tcatctcaatttgcaaaccatcaagcacaattagagggtgtttaccatcatcaacagtggtggtagctgacttaactattgattcgacatcaaaggtctc |
306 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11730592 |
tcatctcattttgcaaaccatcaagcacaattagagggtgtttaccatcattaacagtggtggtagctgacttaactattgattcaacatcaaaggtctc |
11730493 |
T |
|
| Q |
307 |
gtagagaagatcgatccaaattggctgtagcccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11730492 |
gtagagaagatcgatccaaattggctgtggcccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaa |
11730393 |
T |
|
| Q |
407 |
acaccaacaatgacaaaaacaccaacatgaaaatcatcagtagatttgatccacttaagtagtcgatctataatctctttcttctcatattctcttccaa |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11730392 |
acaccaacaatgacaaaaacaccaacatgaaaagcatcagtagatttgatccacttaagtagtcgatctataatctctttcttctcatattctcttccaa |
11730293 |
T |
|
| Q |
507 |
ccacagtaactttctcaaacacttcgtttgaaaaccttctgctacctgctgctgcttgttcttcttctacagagattaaactctttccttcctcawttaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
11730292 |
ccacagtaactttctcaaacacttcgtttgaaaaccttctgctacctgctgctgcttgttctaattctacagagattaaactctttccatcctcacttaa |
11730193 |
T |
|
| Q |
607 |
gcttttgagtttcccttggtcttttgtgacttgacgcgtaacactataacgactctttaagcttaacacccatctgaaaatcgaaatattggccggcaat |
706 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
11730192 |
gcttttgagtttcccttgctcttttgtgacttgacgcgtaacactataacgactctttaagcttaacacccatctgaaaatcgaaatatt-gccagcaat |
11730094 |
T |
|
| Q |
707 |
actctccttgagattgatatcttctatcaaatcgttaaa |
745 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
11730093 |
actctccttgagattgatatcttctatcaaatcgttaaa |
11730055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 47 - 492
Target Start/End: Complemental strand, 11731184 - 11730751
Alignment:
| Q |
47 |
tctttttcatgaaaccctcccaaatcaaatctagcagcaaatccagaaatgttgttagcaaccatgttagcaacatggctgccacgtgtagtgatgagta |
146 |
Q |
| |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |
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| T |
11731184 |
tctttttcatcaaaccctttcaaatcaaatctagcagcaaatccagaaatgttgttagcaact------------tggttgctacgtgtagtgatgagta |
11731097 |
T |
|
| Q |
147 |
ttgcacaaccggtaccacaagactcctttaatcgttgctgcaaattctcgagatccttcttcatctcaatttgcaaaccatcaagcacaattagagggtg |
246 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| || |||| |||||||||| ||||| ||| |
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| T |
11731096 |
ttgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaatcatcaagcacgattaggcagtg |
11730997 |
T |
|
| Q |
247 |
tttaccatcatcaacagtggtggtagctgacttaactattgattcgacatcaaaggtctcgtagagaagatcgatccaaattggctgtagcccaaaattt |
346 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
11730996 |
tttaccatcatcaacagtggtggtagctgacttaactatggattccacatcaaaggtctcgtgtagaagatcgatccaaattggttgtagcccaaaattt |
11730897 |
T |
|
| Q |
347 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaatgacaaaaacaccaacatgaaaatcatcag |
446 |
Q |
| |
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||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11730896 |
gctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaatgacaaaaacaccaacatgaaaatcatcag |
11730797 |
T |
|
| Q |
447 |
tagatttgatccacttaagtagtcgatctataatctctttcttctc |
492 |
Q |
| |
|
|||| ||| || | ||||||||| |||||| || |||||||||||| |
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| T |
11730796 |
tagaattgttcaagttaagtagttgatctacaagctctttcttctc |
11730751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 338 - 525
Target Start/End: Original strand, 11903300 - 11903484
Alignment:
| Q |
338 |
ccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaatgacaaaaacaccaacatgaa |
437 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||||||||||| |||||||||||| || || ||||| | ||||||||||||||||| |||| ||| | |
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| T |
11903300 |
ccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatgacaataacaggaac---ga |
11903396 |
T |
|
| Q |
438 |
aatcatcagtagatttgatccacttaagtagtcgatctataatctctttcttctcatattctcttccaaccacagtaactttctcaaa |
525 |
Q |
| |
|
||||||||| || ||| || |||| |||||| ||||||||||||| ||||| |||| |||||| ||||||| |||| ||||||||| |
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| T |
11903397 |
aatcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaaccatggtaattttctcaaa |
11903484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 11975630 - 11975687
Alignment:
| Q |
347 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctg |
404 |
Q |
| |
|
||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||| |
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|
| T |
11975630 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctg |
11975687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 12038032 - 12037924
Alignment:
| Q |
319 |
gatccaaattggctgtagcccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaatg |
418 |
Q |
| |
|
|||||||||||| |||| ||||||||| || |||||||||||||| ||||| ||| | ||||||||||| || || ||||| | |||||||||||| |
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| T |
12038032 |
gatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaata |
12037933 |
T |
|
| Q |
419 |
acaaaaaca |
427 |
Q |
| |
|
|||| |||| |
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|
| T |
12037932 |
acaataaca |
12037924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 11827046 - 11826968
Alignment:
| Q |
339 |
caaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
417 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||| ||| | ||||||||||| || || ||||| | |||||||||||| |
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|
| T |
11827046 |
caaaattcgctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaat |
11826968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 11859205 - 11859136
Alignment:
| Q |
348 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
417 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||||||||||| || || ||||| | |||||||||||| |
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|
| T |
11859205 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
11859136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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