View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884-Insertion-6 (Length: 681)
Name: NF1884-Insertion-6
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Complemental strand, 32898552 - 32897881
Alignment:
| Q |
8 |
attttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcat |
107 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898552 |
attttggtcttttttgcaccacttgtggtggcaactgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcat |
32898453 |
T |
|
| Q |
108 |
ccttcataagttcnnnnnnntagatggaagaattagttataat---gaaaacaaaattcaaaagcatgttattaacttattatgtaactgtttataaagt |
204 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898452 |
ccttcataagttcaaaaaa-tagatgtaagaattagttataataatgaaaacaaaattcaaaagcatgttattaacttattatgtaactgtttataaagt |
32898354 |
T |
|
| Q |
205 |
gagattttggtagaaaaagctgaacatggaagcattaatattttgaaggtagttaatgataattgatgatgataaactaaaccctatgcaaaatgaaaac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898353 |
gagattttggtagaaaaagctgaacatggaagcattaatattttgtaggtagttaatgataattgatgatgataaactaaaccctatgcaaaatgaaaac |
32898254 |
T |
|
| Q |
305 |
tgtggtgaaaatagcagtgatatacgtacatactagtttttagcataagcaaaacagtttttgaaaaattgatgtgaatggttatggttcccatgcaaac |
404 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32898253 |
tgtggtgaaaatggcagtgatatacgtacatactagttttaagcataagcaaaatagtttttgaaaaatgaatgtgaatggttatggttcccatgcaaac |
32898154 |
T |
|
| Q |
405 |
tcatgtattcacaaaagtgtgataagaaactcttacatgcaccatagggtaataaccattaacatgtaaatgatgtgtcaagattgattaattctctgca |
504 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898153 |
tcatgtattcacaaaagtgtgataggaaactcttacatgcaccatagggtaataaccattaacatgtaaatgatgtgtcaagattgattaattctctgca |
32898054 |
T |
|
| Q |
505 |
gtaatcattcatctcaaaaagtacaaaaaatcctaatcgagataaatcatcaacattgataaatgaaaccaatgcatatacaagcctattaagaaaaaca |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32898053 |
gtaatcattcatctcaaaaagtacaaaaaatcctaatcgagataaatcatcaacattgataaatgaaaccaatgcatatacaagcctattaagcaaaaca |
32897954 |
T |
|
| Q |
605 |
agattccacctatctctcatagtcttttgaaaggatcaaaatgcggctcatatgcaaacaattacaacaaagt |
677 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
32897953 |
agattccacctatctctcatagtcttttgaaaggatcaaaatgcggctcatatacaaataattacaacaaagt |
32897881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 40168989 - 40168888
Alignment:
| Q |
8 |
attttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcat |
107 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40168989 |
attttggtctgttttgcaccacttg---tggtggctgtcacggtggtgcttccatttccaatgttgctcttttgaaacacacgtgaaatgacccattcat |
40168893 |
T |
|
| Q |
108 |
ccttc |
112 |
Q |
| |
|
||||| |
|
|
| T |
40168892 |
ccttc |
40168888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 20409924 - 20410025
Alignment:
| Q |
8 |
attttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcat |
107 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20409924 |
attttggtctgttttgcaccacttg---tggtggctgtcacggtggtgcttccatttccaacgttgctcttttgaaacacacgtgaaatgacccattcat |
20410020 |
T |
|
| Q |
108 |
ccttc |
112 |
Q |
| |
|
||||| |
|
|
| T |
20410021 |
ccttc |
20410025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 17414893 - 17414792
Alignment:
| Q |
8 |
attttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcat |
107 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
17414893 |
attttggtctgttttgcaccacttg---tggtggctgtcacggtggtgcttccattttcaatgttgctcttttgaaacacacgtgaaatgacccattcat |
17414797 |
T |
|
| Q |
108 |
ccttc |
112 |
Q |
| |
|
||||| |
|
|
| T |
17414796 |
ccttc |
17414792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 46312417 - 46312316
Alignment:
| Q |
8 |
attttggtcttttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcat |
107 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
46312417 |
attttggtctgttttgcaccacttg---tggtggctgtcacgatggtgcttccatttccaatgttgctcttttgaaacacacgtgaaatgacccatacat |
46312321 |
T |
|
| Q |
108 |
ccttc |
112 |
Q |
| |
|
||||| |
|
|
| T |
46312320 |
ccttc |
46312316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 2999830 - 2999739
Alignment:
| Q |
18 |
tttttgcaccacttgcagtggcggctgtcacggtggtgcttccatttccagtgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
112 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2999830 |
tttttgcaccacttg---tggtggctgtcacggtggtgcttccattttcaatgttgctcttttgaaacacacgtgaaatgacccattcatccttc |
2999739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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