View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1884-Insertion-7 (Length: 629)

Name: NF1884-Insertion-7
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1884-Insertion-7
NF1884-Insertion-7
[»] chr2 (5 HSPs)
chr2 (222-577)||(33368884-33369239)
chr2 (3-234)||(33368694-33368927)
chr2 (361-452)||(33361989-33362080)
chr2 (35-76)||(33361952-33361993)
chr2 (469-576)||(33362107-33362213)
[»] chr7 (2 HSPs)
chr7 (285-406)||(7764255-7764376)
chr7 (460-575)||(7764085-7764199)
[»] chr1 (10 HSPs)
chr1 (415-576)||(41440897-41441044)
chr1 (470-576)||(41430878-41430984)
chr1 (335-390)||(41430764-41430819)
chr1 (122-169)||(41440447-41440494)
chr1 (45-83)||(41440382-41440420)
chr1 (197-229)||(41440539-41440571)
chr1 (281-333)||(41440826-41440878)
chr1 (525-576)||(41425526-41425577)
chr1 (532-563)||(41452284-41452315)
chr1 (228-265)||(41440539-41440576)
[»] scaffold0274 (3 HSPs)
scaffold0274 (417-576)||(13939-14087)
scaffold0274 (337-390)||(14104-14157)
scaffold0274 (523-576)||(18392-18445)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 222 - 577
Target Start/End: Original strand, 33368884 - 33369239
Alignment:
Q  222 ttgagattttgctgtatgtgaagttttgcatttgagatttttctactgctcttactgctgggtgagtttgtgaaaaataaagtaaataaagagaagtttc 321  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33368884 ttgagattttgctgtatgtgaagttttggatttgagattttgctactgctcttactgctgggtgagtttgtgaaaaataaagtaaataaagagaagtttc 33368983  T
Q  322 tgttggtttatctaagtatagttttacagtttgaggatgtttgttttggttttcgaaatagaagggattctttaaggaggttcctctggtgccctttgtt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33368984 tgttggtttatctaagtatagttttacagtttgaggatgtttgttttggttttcgaaatagaagggattctttaaggaggttcctctggtgccctttgtt 33369083  T
Q  422 gttatgaagctattgctacctttagaaataaggggtcgatatttgaccataagtttcatgttgttttatctctgtgttataaatgtttctaaaagtatat 521  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33369084 gttatgaagctattggtacctttagaaataaggggtcaatatttgaccataagtttcatgttgttttatctatgtgttataaatgtttctaaaagtatat 33369183  T
Q  522 actttttctctaccaacaaataatcattgtttgttacttttgcagtccattgtcct 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33369184 actttttctctaccaacaaataatcattgtttgttacttttgcagtccattgtcct 33369239  T

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Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 33368694 - 33368927
Alignment:
Q  3 caacataaaaaatattacactt--atgcatacggtgtttttcatcttctgattgtgataggccattggttatttgtcatcsttgataggcctacttttct 100  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33368694 caacgtaaaaaatattacactttcatgcatacggtgtttttcatcttctgattgtgataggccattggttatttgtcatcgttgataggcctacttttct 33368793  T
Q  101 gttattaatatgaagttgcaggtgaaacatatttagtcattgaacttgggaaaatgtagaatcaaactgtttgtgtgttggatagtgaacttgagatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33368794 gttattaatatgaagttgcaggtgaaacatatttagtcattgaacttgggaaaatgtagaatcaaactgtttgtgtgttggatagcgaacttgagatttt 33368893  T
Q  201 gctgtatgtgaagttttggatttgagattttgct 234  Q
    ||||||||||||||||||||||||||||||||||    
T  33368894 gctgtatgtgaagttttggatttgagattttgct 33368927  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 33361989 - 33362080
Alignment:
Q  361 tttgttttggttttcgaaatagaagggattctttaaggaggttcctctggtgccctttgttgttatgaagctattgctacctttagaaataa 452  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||   |||||||||||||| ||||||| | |  |||||||||||||||    
T  33361989 tttgttttggttttcgaaataaaagggattgtttaaagaggttccttcagtgccctttgttgtaatgaagcaaataatacctttagaaataa 33362080  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 33361952 - 33361993
Alignment:
Q  35 tgtttttcatcttctgattgtgataggccattggttatttgt 76  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33361952 tgtttttcatcttctgattgtgataggccattgattatttgt 33361993  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 576
Target Start/End: Original strand, 33362107 - 33362213
Alignment:
Q  469 cataagtttcatgttgttttatctctgtgttataaatgtttctaaaagtatatactttttctctaccaacaaataatcattgtttgttacttttgcagtc 568  Q
    |||||||| ||| || |||||||| ||| ||| |||| ||| | ||||| |||  ||||||| ||||||||||||||| ||||||||| || ||| || |    
T  33362107 cataagttccattttattttatctatgttttaaaaatatttttgaaagtctatg-tttttctttaccaacaaataatctttgtttgtttctgttgtagcc 33362205  T
Q  569 cattgtcc 576  Q
    ||||||||    
T  33362206 cattgtcc 33362213  T

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Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 7764376 - 7764255
Alignment:
Q  285 gagtttgtgaaaaataaagtaaataaagagaagtttctgttggtttatctaagtatagttttacagtttgaggatgtttgttttggttttcgaaatagaa 384  Q
    ||||||||||||||||||| |||||||   | |||| |||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||     
T  7764376 gagtttgtgaaaaataaaggaaataaaataaggtttttgttggtttatcaaggtatagttttaaagtttaaggatgtttgttttggttttcgaaatagag 7764277  T
Q  385 gggattctttaaggaggttcct 406  Q
     ||||| |||||||||||||||    
T  7764276 aggattgtttaaggaggttcct 7764255  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 575
Target Start/End: Complemental strand, 7764199 - 7764085
Alignment:
Q  460 atatttgaccataagtttcatgttgttttatctctgtgttataaatgtttctaaaagtatatactttttctctaccaacaaataatcattgtttgttact 559  Q
    ||||||||| | ||| | ||| || |||||||| ||| ||||||| |||||||||||| | | |||||||| ||||||||| ||||| ||||||||||||    
T  7764199 atatttgactacaaggtccattttattttatctatgttttataaacgtttctaaaagtctgt-ctttttctttaccaacaagtaatcgttgtttgttact 7764101  T
Q  560 tttgcagtccattgtc 575  Q
    |||| ||||| |||||    
T  7764100 tttgtagtccgttgtc 7764085  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 415 - 576
Target Start/End: Original strand, 41440897 - 41441044
Alignment:
Q  415 ctttgttgttatgaagctattgctacctttagaaataaggggtcgatatttgaccataagtttcatgttgttttatctctgtgttataaatgtttctaaa 514  Q
    ||||||||||||||||||| || ||||||||||||  |||||   ||||||||||||||||| ||| || ||||||           |||||||||||||    
T  41440897 ctttgttgttatgaagctactgatacctttagaaactaggggctaatatttgaccataagttccatattattttat-----------aaatgtttctaaa 41440985  T
Q  515 agtatatactttttctctaccaacaaataatcattgtttgttacttttgcagtccattgtcc 576  Q
    ||| |||   |||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  41440986 agtctat---ttttctgtaccaacaaataatcattgtttgttacttctgtagtccattgtcc 41441044  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 470 - 576
Target Start/End: Original strand, 41430878 - 41430984
Alignment:
Q  470 ataagtttcatgttgttttatctctgtgttataaatgtttctaaaagtatatactttttctctaccaacaaataatcattgtttgttacttttgcagtcc 569  Q
    ||||||| ||| || |||||||||||| |||||  ||||||| ||| | |   |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  41430878 ataagttccattttattttatctctgttttatagttgtttctgaaattcttatctttttctttacaaacaaataatcattgtttgttacttttgtagtcc 41430977  T
Q  570 attgtcc 576  Q
    |||||||    
T  41430978 attgtcc 41430984  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 41430764 - 41430819
Alignment:
Q  335 aagtatagttttacagtttgaggatgtttgttttggttttcgaaatagaagggatt 390  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  41430764 aagtatatttttacagtttgaggaggtttgttttggttttcgaagtagaggggatt 41430819  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 41440447 - 41440494
Alignment:
Q  122 gtgaaacatatttagtcattgaacttgggaaaatgtagaatcaaactg 169  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||||||    
T  41440447 gtgaaacgtatctagtcattgaacttaggaaaatgtagaatcaaactg 41440494  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 41440382 - 41440420
Alignment:
Q  45 cttctgattgtgataggccattggttatttgtcatcstt 83  Q
    ||||| |||||||||||||||||||||||||||||| ||    
T  41440382 cttcttattgtgataggccattggttatttgtcatcgtt 41440420  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 41440539 - 41440571
Alignment:
Q  197 ttttgctgtatgtgaagttttggatttgagatt 229  Q
    |||||||||||||||||||||||||||||||||    
T  41440539 ttttgctgtatgtgaagttttggatttgagatt 41440571  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 41440826 - 41440878
Alignment:
Q  281 gggtgagtttgtgaaaaataaagtaaataaagagaagtttctgttggtttatc 333  Q
    |||||||||||||| || ||||| ||||| || ||||||||||||||||||||    
T  41440826 gggtgagtttgtgagaagtaaaggaaatagagtgaagtttctgttggtttatc 41440878  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 576
Target Start/End: Original strand, 41425526 - 41425577
Alignment:
Q  525 ttttctctaccaacaaataatcattgtttgttacttttgcagtccattgtcc 576  Q
    |||||| ||| ||||||| |||||| ||||||||||||| ||||||||||||    
T  41425526 ttttctttacaaacaaatgatcattatttgttacttttgtagtccattgtcc 41425577  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 563
Target Start/End: Original strand, 41452284 - 41452315
Alignment:
Q  532 taccaacaaataatcattgtttgttacttttg 563  Q
    ||||||||||||||||||||||||||||||||    
T  41452284 taccaacaaataatcattgtttgttacttttg 41452315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 41440539 - 41440576
Alignment:
Q  228 ttttgctgtatgtgaagttttgcatttgagatttttct 265  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  41440539 ttttgctgtatgtgaagttttggatttgagattcttct 41440576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 576
Target Start/End: Complemental strand, 14087 - 13939
Alignment:
Q  417 ttgttgttatgaagctattgctacctttagaaataaggggtcgatatttgaccataagtttcatgttgttttatctctgtgttataaatgtttctaaaag 516  Q
    ||||||||||||||||| || |||||||||||||||||||           |  |||||||||| || ||||| |||||| |||||  ||||||| |||     
T  14087 ttgttgttatgaagctactggtacctttagaaataagggg-----------ctgtaagtttcattttattttaactctgttttatagttgtttctgaaat 13999  T
Q  517 tatatactttttctctaccaacaaataatcattgtttgttacttttgcagtccattgtcc 576  Q
    | |   |||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  13998 tcttatctttttctttacaaacaaataatcattgtttgttacttttgcagtccattgtcc 13939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 14157 - 14104
Alignment:
Q  337 gtatagttttacagtttgaggatgtttgttttggttttcgaaatagaagggatt 390  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  14157 gtatatttttacagtttgaggaggtttgttttggttttcgaagtagaggggatt 14104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 18445 - 18392
Alignment:
Q  523 ctttttctctaccaacaaataatcattgtttgttacttttgcagtccattgtcc 576  Q
    |||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||    
T  18445 ctttttctttacaaacaaataatcattatttgttacttttgtagtccattgtcc 18392  T

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